Wall clock time and date at job start Fri Apr 10 2020 18:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34486 * 125.57342 * 2 1 4 4 C 1.46688 * 106.33133 * 180.16248 * 3 2 1 5 5 C 1.47263 * 126.93957 * 179.88965 * 4 3 2 6 6 O 1.21630 * 119.99639 * 179.68876 * 5 4 3 7 7 N 1.34767 * 120.00198 * 359.68614 * 5 4 3 8 8 C 1.46499 * 120.00065 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.47354 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.55410 * 304.87420 * 9 8 7 11 11 C 1.53292 * 109.51354 * 184.74649 * 9 8 7 12 12 N 1.47165 * 108.41376 * 187.79598 * 11 9 8 13 13 C 1.36935 * 120.99578 * 230.54471 * 12 11 9 14 14 H 1.07992 * 120.00186 * 153.32389 * 13 12 11 15 15 C 1.38816 * 119.99602 * 333.33361 * 13 12 11 16 16 N 1.31616 * 120.00208 * 343.52858 * 15 13 12 17 17 Si 1.86797 * 119.99898 * 163.53345 * 15 13 12 18 18 H 1.48500 * 109.47409 * 59.99733 * 17 15 13 19 19 H 1.48501 * 109.46973 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47195 * 299.99374 * 17 15 13 21 21 C 1.47151 * 118.02621 * 50.46989 * 12 11 9 22 22 C 1.53294 * 108.41779 * 309.52979 * 21 12 11 23 23 O 1.42966 * 109.22198 * 52.28429 * 22 21 12 24 24 C 1.36774 * 106.11601 * 359.63160 * 4 3 2 25 25 C 1.50699 * 125.79965 * 180.24822 * 24 4 3 26 26 N 1.34651 * 108.39578 * 0.22243 * 24 4 3 27 27 H 0.97006 * 124.85044 * 180.02562 * 26 24 4 28 28 H 1.08998 * 109.46502 * 270.24786 * 1 2 3 29 29 H 1.09002 * 109.46696 * 30.24469 * 1 2 3 30 30 H 1.08998 * 109.47385 * 150.24581 * 1 2 3 31 31 H 1.08003 * 126.83697 * 0.04192 * 3 2 1 32 32 H 0.97002 * 120.00410 * 0.02562 * 7 5 4 33 33 H 1.09003 * 109.47415 * 60.00089 * 8 7 5 34 34 H 1.08998 * 109.47371 * 299.99944 * 8 7 5 35 35 H 1.08997 * 109.47587 * 180.12462 * 10 9 8 36 36 H 1.09005 * 109.47135 * 300.12598 * 10 9 8 37 37 H 1.09003 * 109.47554 * 60.12280 * 10 9 8 38 38 H 1.09007 * 109.68283 * 307.49741 * 11 9 8 39 39 H 1.09002 * 109.68326 * 68.05081 * 11 9 8 40 40 H 0.96998 * 120.00577 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.68282 * 189.78626 * 21 12 11 42 42 H 1.09005 * 109.68198 * 69.27128 * 21 12 11 43 43 H 1.08997 * 109.51621 * 172.20381 * 22 21 12 44 44 H 1.08999 * 109.51217 * 292.30900 * 22 21 12 45 45 H 1.08993 * 109.47448 * 89.99887 * 25 24 4 46 46 H 1.09001 * 109.46840 * 209.99458 * 25 24 4 47 47 H 1.08998 * 109.46849 * 329.99040 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6104 -0.0040 5 6 4.8978 1.4301 -0.0077 6 8 5.9893 0.8934 -0.0051 7 7 4.8081 2.7747 -0.0141 8 6 6.0252 3.5901 -0.0172 9 6 5.6462 5.0724 -0.0250 10 6 4.7216 5.3583 -1.2100 11 6 6.9144 5.9246 -0.1479 12 7 6.5449 7.3372 0.0354 13 6 6.9409 8.2920 -0.8627 14 1 6.3562 9.1913 -0.9880 15 6 8.0941 8.1039 -1.6123 16 7 8.9735 7.1942 -1.2499 17 14 8.3977 9.1419 -3.1353 18 1 8.4472 10.5765 -2.7549 19 1 9.6900 8.7491 -3.7525 20 1 7.2977 8.9257 -4.1092 21 6 5.7355 7.6932 1.2116 22 6 4.5246 6.7548 1.2683 23 8 4.9752 5.4000 1.1941 24 6 3.5998 -0.7552 0.0024 25 6 4.7722 -1.7021 0.0067 26 7 2.3008 -1.1099 0.0047 27 1 1.9757 -2.0238 0.0095 28 1 -0.3632 0.0044 1.0277 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3634 -0.8921 -0.5100 31 1 1.9630 2.1234 0.0006 32 1 3.9376 3.2028 -0.0158 33 1 6.6136 3.3612 -0.9058 34 1 6.6126 3.3696 0.8741 35 1 4.4542 6.4149 -1.2157 36 1 5.2339 5.1082 -2.1392 37 1 3.8181 4.7553 -1.1197 38 1 7.6302 5.6304 0.6198 39 1 7.3560 5.7857 -1.1348 40 1 9.7795 7.0630 -1.7734 41 1 5.3962 8.7255 1.1251 42 1 6.3322 7.5775 2.1165 43 1 3.9879 6.9091 2.2043 44 1 3.8614 6.9652 0.4293 45 1 5.0550 -1.9256 1.0353 46 1 4.4955 -2.6251 -0.5028 47 1 5.6139 -1.2404 -0.5095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108246881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:41 Heat of formation + Delta-G solvation = -19.262041 kcal Electronic energy + Delta-G solvation = -27874.146231 eV Core-core repulsion = 24058.227945 eV Total energy + Delta-G solvation = -3815.918285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41881 -39.38502 -38.34877 -34.80999 -34.25145 -32.77021 -31.90691 -31.22338 -30.78955 -29.31818 -27.89184 -26.53964 -25.76267 -24.59720 -23.17993 -22.19103 -20.97134 -20.42916 -19.49721 -18.52108 -17.09749 -17.00447 -16.01264 -15.76119 -15.35722 -15.16824 -14.92814 -14.31950 -14.24749 -13.97131 -13.92747 -13.58704 -13.49180 -13.41271 -13.27192 -12.92430 -12.71394 -12.58121 -12.44935 -12.34233 -12.25060 -11.81516 -11.56755 -11.52132 -11.13809 -10.95830 -10.75974 -10.63554 -10.26963 -10.22194 -9.93406 -9.59950 -9.45102 -8.97727 -8.95382 -8.59245 -8.49976 -8.09190 -6.69473 -5.80898 -3.24710 1.77932 2.26249 2.93669 3.36777 3.43269 3.43797 3.70603 3.77943 4.33914 4.47106 4.60187 4.75056 4.91352 5.11086 5.16962 5.23737 5.24990 5.38395 5.46560 5.53780 5.55407 5.57938 5.60548 5.73675 5.75370 5.90395 5.97663 6.00166 6.11319 6.15489 6.20124 6.23618 6.40157 6.55017 6.67192 6.68457 6.79625 6.83905 6.87877 6.91545 7.12754 7.30066 7.52353 7.73614 7.95734 7.96929 8.37023 8.66174 9.14464 9.77530 10.35259 11.27021 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.002982 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.162932 B = 9387.685243 C = 9912.525096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.006 3.994 3 C -0.163 4.163 4 C -0.227 4.227 5 C 0.586 3.414 6 O -0.557 6.557 7 N -0.713 5.713 8 C 0.142 3.858 9 C 0.078 3.922 10 C -0.161 4.161 11 C 0.160 3.840 12 N -0.591 5.591 13 C -0.255 4.255 14 H 0.067 0.933 15 C 0.004 3.996 16 N -0.901 5.901 17 Si 0.903 3.097 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.383 6.383 24 C 0.102 3.898 25 C -0.094 4.094 26 N -0.552 5.552 27 H 0.412 0.588 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.144 0.856 32 H 0.400 0.600 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.029 0.971 39 H 0.096 0.904 40 H 0.256 0.744 41 H 0.060 0.940 42 H 0.025 0.975 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.835 -15.555 2.333 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C -0.187 4.187 4 C -0.236 4.236 5 C 0.374 3.626 6 O -0.437 6.437 7 N -0.364 5.364 8 C 0.018 3.982 9 C 0.037 3.963 10 C -0.219 4.219 11 C 0.034 3.966 12 N -0.315 5.315 13 C -0.384 4.384 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.733 3.267 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.210 1.210 21 C -0.017 4.017 22 C -0.032 4.032 23 O -0.303 6.303 24 C -0.015 4.015 25 C -0.151 4.151 26 N -0.148 5.148 27 H 0.248 0.752 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.162 0.838 32 H 0.236 0.764 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.961 -16.149 2.394 22.832 hybrid contribution -0.358 0.654 -0.908 1.175 sum -16.320 -15.495 1.485 22.553 Atomic orbital electron populations 1.20315 0.87832 1.03252 1.02667 1.20180 0.93389 0.86015 1.10687 1.21828 0.90974 0.97766 1.08149 1.20195 0.93070 0.92242 1.18129 1.17333 0.87614 0.81800 0.75850 1.90721 1.28630 1.72524 1.51857 1.45780 1.10282 1.05532 1.74778 1.21299 0.86521 0.87628 1.02786 1.22548 0.95853 0.93409 0.84455 1.22194 0.98563 1.02684 0.98416 1.21288 0.90083 0.82399 1.02845 1.43989 1.61124 1.03016 1.23321 1.19108 1.04227 1.00618 1.14457 0.91524 1.25047 0.94961 0.98954 1.00537 1.69999 1.09588 1.36232 1.38706 0.86360 0.77156 0.79931 0.83256 1.20898 1.21556 1.20982 1.21594 0.92186 0.96836 0.91084 1.23026 0.96776 0.83150 1.00268 1.87838 1.76308 1.27983 1.38146 1.20295 0.84751 0.94324 1.02163 1.20568 0.94821 0.96268 1.03446 1.41499 1.05354 1.08627 1.59356 0.75162 0.91054 0.89978 0.91914 0.83831 0.76420 0.90137 0.90963 0.90898 0.91902 0.93930 0.95266 0.88611 0.93380 0.92126 0.95692 0.90267 0.93436 0.90518 0.92115 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.41 36.01 0.37 -0.11 16 2 C 0.01 0.06 7.13 -81.86 -0.58 -0.53 16 3 C -0.16 -1.89 10.45 -37.50 -0.39 -2.28 16 4 C -0.23 -3.18 6.29 -103.35 -0.65 -3.83 16 5 C 0.59 9.84 7.81 -12.60 -0.10 9.75 16 6 O -0.56 -10.82 14.81 5.25 0.08 -10.74 16 7 N -0.71 -11.51 5.19 -61.43 -0.32 -11.83 16 8 C 0.14 2.59 4.85 -4.04 -0.02 2.57 16 9 C 0.08 1.51 0.78 -90.47 -0.07 1.44 16 10 C -0.16 -2.86 7.86 37.15 0.29 -2.56 16 11 C 0.16 3.82 4.11 -3.53 -0.01 3.80 16 12 N -0.59 -14.60 2.57 -171.81 -0.44 -15.04 16 13 C -0.25 -6.84 9.65 -15.06 -0.15 -6.99 16 14 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 15 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 16 N -0.90 -25.92 11.14 55.49 0.62 -25.30 16 17 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.11 2.29 6.73 -3.53 -0.02 2.26 16 22 C 0.05 0.81 6.60 37.31 0.25 1.06 16 23 O -0.38 -7.35 10.17 -35.23 -0.36 -7.71 16 24 C 0.10 1.19 7.17 -81.89 -0.59 0.61 16 25 C -0.09 -0.95 9.88 36.01 0.36 -0.60 16 26 N -0.55 -4.84 5.90 -5.42 -0.03 -4.87 16 27 H 0.41 2.20 8.96 -40.82 -0.37 1.83 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.14 1.47 7.70 -52.48 -0.40 1.06 16 32 H 0.40 5.83 6.13 -40.82 -0.25 5.58 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.07 1.40 6.12 -51.93 -0.32 1.08 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.04 0.64 6.59 -51.93 -0.34 0.30 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 2.51 6.16 -51.93 -0.32 2.19 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.81 6.26 -51.93 -0.32 0.49 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.10 1.31 6.47 -51.93 -0.34 0.97 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -32.75 373.45 -8.53 -41.28 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.27 Total: 7.55 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.40 Total: 4.62 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.17 Total: -57.04 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.28 Total: -18.45 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.75 -8.53 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108246881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.016 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds