Wall clock time and date at job start Fri Apr 10 2020 18:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34486 * 125.57342 * 2 1 4 4 C 1.46688 * 106.33133 * 180.16248 * 3 2 1 5 5 C 1.47263 * 126.93957 * 179.88965 * 4 3 2 6 6 O 1.21630 * 119.99639 * 179.68876 * 5 4 3 7 7 N 1.34767 * 120.00198 * 359.68614 * 5 4 3 8 8 C 1.46499 * 120.00065 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.47354 * 179.97438 * 8 7 5 10 10 C 1.52994 * 109.55410 * 304.87420 * 9 8 7 11 11 C 1.53292 * 109.51354 * 184.74649 * 9 8 7 12 12 N 1.47165 * 108.41376 * 187.79598 * 11 9 8 13 13 C 1.36935 * 120.99578 * 230.54471 * 12 11 9 14 14 H 1.07992 * 120.00186 * 153.32389 * 13 12 11 15 15 C 1.38816 * 119.99602 * 333.33361 * 13 12 11 16 16 N 1.31616 * 120.00208 * 343.52858 * 15 13 12 17 17 Si 1.86797 * 119.99898 * 163.53345 * 15 13 12 18 18 H 1.48500 * 109.47409 * 59.99733 * 17 15 13 19 19 H 1.48501 * 109.46973 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47195 * 299.99374 * 17 15 13 21 21 C 1.47151 * 118.02621 * 50.46989 * 12 11 9 22 22 C 1.53294 * 108.41779 * 309.52979 * 21 12 11 23 23 O 1.42966 * 109.22198 * 52.28429 * 22 21 12 24 24 C 1.36774 * 106.11601 * 359.63160 * 4 3 2 25 25 C 1.50699 * 125.79965 * 180.24822 * 24 4 3 26 26 N 1.34651 * 108.39578 * 0.22243 * 24 4 3 27 27 H 0.97006 * 124.85044 * 180.02562 * 26 24 4 28 28 H 1.08998 * 109.46502 * 270.24786 * 1 2 3 29 29 H 1.09002 * 109.46696 * 30.24469 * 1 2 3 30 30 H 1.08998 * 109.47385 * 150.24581 * 1 2 3 31 31 H 1.08003 * 126.83697 * 0.04192 * 3 2 1 32 32 H 0.97002 * 120.00410 * 0.02562 * 7 5 4 33 33 H 1.09003 * 109.47415 * 60.00089 * 8 7 5 34 34 H 1.08998 * 109.47371 * 299.99944 * 8 7 5 35 35 H 1.08997 * 109.47587 * 180.12462 * 10 9 8 36 36 H 1.09005 * 109.47135 * 300.12598 * 10 9 8 37 37 H 1.09003 * 109.47554 * 60.12280 * 10 9 8 38 38 H 1.09007 * 109.68283 * 307.49741 * 11 9 8 39 39 H 1.09002 * 109.68326 * 68.05081 * 11 9 8 40 40 H 0.96998 * 120.00577 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.68282 * 189.78626 * 21 12 11 42 42 H 1.09005 * 109.68198 * 69.27128 * 21 12 11 43 43 H 1.08997 * 109.51621 * 172.20381 * 22 21 12 44 44 H 1.08999 * 109.51217 * 292.30900 * 22 21 12 45 45 H 1.08993 * 109.47448 * 89.99887 * 25 24 4 46 46 H 1.09001 * 109.46840 * 209.99458 * 25 24 4 47 47 H 1.08998 * 109.46849 * 329.99040 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6104 -0.0040 5 6 4.8978 1.4301 -0.0077 6 8 5.9893 0.8934 -0.0051 7 7 4.8081 2.7747 -0.0141 8 6 6.0252 3.5901 -0.0172 9 6 5.6462 5.0724 -0.0250 10 6 4.7216 5.3583 -1.2100 11 6 6.9144 5.9246 -0.1479 12 7 6.5449 7.3372 0.0354 13 6 6.9409 8.2920 -0.8627 14 1 6.3562 9.1913 -0.9880 15 6 8.0941 8.1039 -1.6123 16 7 8.9735 7.1942 -1.2499 17 14 8.3977 9.1419 -3.1353 18 1 8.4472 10.5765 -2.7549 19 1 9.6900 8.7491 -3.7525 20 1 7.2977 8.9257 -4.1092 21 6 5.7355 7.6932 1.2116 22 6 4.5246 6.7548 1.2683 23 8 4.9752 5.4000 1.1941 24 6 3.5998 -0.7552 0.0024 25 6 4.7722 -1.7021 0.0067 26 7 2.3008 -1.1099 0.0047 27 1 1.9757 -2.0238 0.0095 28 1 -0.3632 0.0044 1.0277 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3634 -0.8921 -0.5100 31 1 1.9630 2.1234 0.0006 32 1 3.9376 3.2028 -0.0158 33 1 6.6136 3.3612 -0.9058 34 1 6.6126 3.3696 0.8741 35 1 4.4542 6.4149 -1.2157 36 1 5.2339 5.1082 -2.1392 37 1 3.8181 4.7553 -1.1197 38 1 7.6302 5.6304 0.6198 39 1 7.3560 5.7857 -1.1348 40 1 9.7795 7.0630 -1.7734 41 1 5.3962 8.7255 1.1251 42 1 6.3322 7.5775 2.1165 43 1 3.9879 6.9091 2.2043 44 1 3.8614 6.9652 0.4293 45 1 5.0550 -1.9256 1.0353 46 1 4.4955 -2.6251 -0.5028 47 1 5.6139 -1.2404 -0.5095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108246881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:40 Heat of formation + Delta-G solvation = -41.683567 kcal Electronic energy + Delta-G solvation = -27875.118501 eV Core-core repulsion = 24058.227945 eV Total energy + Delta-G solvation = -3816.890556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.26538 -40.90934 -39.76232 -36.50512 -35.88966 -33.52276 -33.30005 -33.17094 -31.82795 -29.97848 -29.56152 -28.10088 -27.43369 -25.57830 -24.96642 -23.45361 -22.46886 -21.25092 -20.78527 -20.10606 -18.89947 -18.02873 -17.39934 -17.20489 -16.72330 -16.54769 -16.23117 -16.02136 -15.60740 -15.38174 -15.24430 -15.10952 -14.70287 -14.58935 -14.22127 -14.11945 -14.01968 -13.82798 -13.44418 -13.39956 -13.17230 -13.01035 -12.91347 -12.88614 -12.74282 -12.51310 -12.43146 -12.36799 -12.17169 -11.94031 -11.82838 -11.13150 -10.89178 -10.70780 -10.48231 -10.12237 -9.70766 -8.92875 -8.70136 -7.88012 -5.35557 0.76387 1.46510 1.47136 1.49471 1.56343 2.10112 2.45823 2.54048 2.58909 2.82285 3.26780 3.52445 3.87484 3.91818 4.01617 4.04008 4.12092 4.24314 4.27374 4.44145 4.47725 4.53654 4.59170 4.64157 4.69648 4.72484 4.73056 4.81111 4.86399 4.91908 4.97912 5.06439 5.10737 5.13512 5.19318 5.21773 5.34758 5.36301 5.50564 5.54678 5.62555 5.83476 6.01883 6.30965 6.39410 6.62836 6.74135 7.08059 7.38091 7.77382 8.32111 9.17657 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019198 B = 0.002982 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.162932 B = 9387.685243 C = 9912.525096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.020 3.980 3 C -0.186 4.186 4 C -0.265 4.265 5 C 0.580 3.420 6 O -0.594 6.594 7 N -0.704 5.704 8 C 0.152 3.848 9 C 0.095 3.905 10 C -0.151 4.151 11 C 0.170 3.830 12 N -0.607 5.607 13 C -0.261 4.261 14 H 0.074 0.926 15 C -0.050 4.050 16 N -0.937 5.937 17 Si 0.968 3.032 18 H -0.275 1.275 19 H -0.297 1.297 20 H -0.275 1.275 21 C 0.102 3.898 22 C 0.052 3.948 23 O -0.387 6.387 24 C 0.102 3.898 25 C -0.091 4.091 26 N -0.535 5.535 27 H 0.431 0.569 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.153 0.847 32 H 0.410 0.590 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.075 0.925 38 H -0.008 1.008 39 H 0.066 0.934 40 H 0.250 0.750 41 H 0.073 0.927 42 H 0.012 0.988 43 H 0.117 0.883 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.093 0.907 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.674 -16.321 2.135 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.209 4.209 4 C -0.275 4.275 5 C 0.371 3.629 6 O -0.477 6.477 7 N -0.355 5.355 8 C 0.027 3.973 9 C 0.054 3.946 10 C -0.209 4.209 11 C 0.043 3.957 12 N -0.331 5.331 13 C -0.390 4.390 14 H 0.092 0.908 15 C -0.246 4.246 16 N -0.583 5.583 17 Si 0.796 3.204 18 H -0.200 1.200 19 H -0.224 1.224 20 H -0.200 1.200 21 C -0.023 4.023 22 C -0.026 4.026 23 O -0.306 6.306 24 C -0.018 4.018 25 C -0.149 4.149 26 N -0.133 5.133 27 H 0.271 0.729 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.171 0.829 32 H 0.247 0.753 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.010 0.990 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.030 0.970 43 H 0.135 0.865 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.112 0.888 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.877 -16.916 2.214 26.194 hybrid contribution 0.797 0.869 -0.758 1.402 sum -19.080 -16.047 1.456 24.973 Atomic orbital electron populations 1.20445 0.84905 1.04671 1.03845 1.20715 0.94983 0.85285 1.07925 1.22012 0.90012 0.99153 1.09723 1.20136 0.92901 0.93188 1.21261 1.17858 0.88328 0.81852 0.74868 1.90696 1.30307 1.73078 1.53596 1.45598 1.09700 1.05393 1.74834 1.20974 0.87332 0.87624 1.01383 1.22179 0.94070 0.92766 0.85635 1.22087 0.99214 1.02604 0.96958 1.21031 0.91591 0.83290 0.99811 1.44242 1.61442 1.02977 1.24459 1.19479 1.03996 1.01009 1.14564 0.90805 1.25827 0.94972 1.00433 1.03349 1.70178 1.10020 1.38223 1.39839 0.85333 0.76640 0.78593 0.79842 1.20045 1.22363 1.20048 1.21816 0.92798 0.98673 0.89014 1.23121 0.95322 0.81251 1.02870 1.87847 1.75937 1.28973 1.37863 1.20437 0.86229 0.93863 1.01231 1.20534 0.93501 0.97128 1.03714 1.41493 1.04213 1.09762 1.57814 0.72901 0.89864 0.89200 0.89918 0.82910 0.75259 0.91275 0.92890 0.91812 0.92691 0.90645 0.99029 0.91522 0.94063 0.90851 0.97042 0.86484 0.92058 0.90141 0.88799 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.41 71.24 0.74 0.13 16 2 C 0.02 0.32 7.13 40.98 0.29 0.61 16 3 C -0.19 -3.95 10.45 23.62 0.25 -3.70 16 4 C -0.26 -7.28 6.29 -19.04 -0.12 -7.40 16 5 C 0.58 19.98 7.81 86.62 0.68 20.66 16 6 O -0.59 -24.23 14.81 -4.13 -0.06 -24.29 16 7 N -0.70 -22.94 5.19 -466.53 -2.42 -25.36 16 8 C 0.15 5.80 4.85 86.38 0.42 6.22 16 9 C 0.09 3.70 0.78 -10.70 -0.01 3.70 16 10 C -0.15 -5.23 7.86 71.98 0.57 -4.67 16 11 C 0.17 8.45 4.11 86.35 0.35 8.80 16 12 N -0.61 -30.52 2.57 -697.50 -1.79 -32.31 16 13 C -0.26 -14.12 9.65 84.03 0.81 -13.31 16 14 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 15 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 16 N -0.94 -56.14 11.14 21.65 0.24 -55.90 16 17 Si 0.97 44.71 29.58 68.60 2.03 46.74 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C 0.10 4.22 6.73 86.35 0.58 4.80 16 22 C 0.05 1.71 6.60 72.08 0.48 2.19 16 23 O -0.39 -14.45 10.17 -148.98 -1.52 -15.97 16 24 C 0.10 2.24 7.17 41.78 0.30 2.54 16 25 C -0.09 -1.79 9.88 71.24 0.70 -1.09 16 26 N -0.53 -7.81 5.90 -171.06 -1.01 -8.82 16 27 H 0.43 2.99 8.96 -92.70 -0.83 2.16 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.15 2.80 7.70 -2.91 -0.02 2.77 16 32 H 0.41 11.51 6.13 -92.71 -0.57 10.94 16 33 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.06 2.34 6.12 -2.39 -0.01 2.33 16 36 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.07 2.10 6.59 -2.39 -0.02 2.08 16 38 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 39 H 0.07 3.70 6.16 -2.39 -0.01 3.68 16 40 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.07 2.80 7.96 -2.38 -0.02 2.78 16 42 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.06 1.91 6.26 -2.39 -0.01 1.89 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.07 1.95 6.47 -2.39 -0.02 1.93 16 Total: -1.00 -74.44 373.45 1.53 -72.91 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.40 Total: 25.90 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 6.46 Total: 17.10 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -4.98 Total: -122.40 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.58 Total: -40.26 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -74.44 1.53 -72.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108246881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.229 kcal (2) G-P(sol) polarization free energy of solvation -74.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds