Wall clock time and date at job start Fri Apr 10 2020 18:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00189 * 2 1 4 4 H 1.48497 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47124 * 300.00470 * 3 2 1 6 6 H 1.48502 * 109.46662 * 59.99885 * 3 2 1 7 7 C 1.38813 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00064 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00301 * 0.02562 * 7 2 1 10 10 C 1.47577 * 134.49600 * 179.97438 * 9 7 2 11 11 C 1.53943 * 86.12009 * 155.35753 * 10 9 7 12 12 N 1.46497 * 113.74573 * 137.95129 * 11 10 9 13 13 C 1.46767 * 124.35105 * 121.87757 * 12 11 10 14 14 C 1.54481 * 105.47391 * 197.04272 * 13 12 11 15 15 H 1.09002 * 110.97229 * 92.70050 * 14 13 12 16 16 N 1.46500 * 110.99942 * 216.45074 * 14 13 12 17 17 C 1.34780 * 119.99970 * 201.88836 * 16 14 13 18 18 O 1.21278 * 119.99825 * 359.97438 * 17 16 14 19 19 C 1.50695 * 120.00046 * 180.02562 * 17 16 14 20 20 C 1.52999 * 109.47359 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47335 * 179.97438 * 20 19 17 22 22 C 1.53000 * 117.50267 * 243.75001 * 21 20 19 23 23 C 1.53002 * 117.49852 * 175.08993 * 21 20 19 24 24 C 1.54632 * 101.76299 * 334.58189 * 14 13 12 25 25 C 1.34418 * 124.35219 * 301.90513 * 12 11 10 26 26 O 1.21284 * 124.93754 * 359.53175 * 25 12 11 27 27 C 1.47820 * 134.45300 * 359.86408 * 9 7 2 28 28 H 0.96998 * 119.99962 * 0.02562 * 1 2 3 29 29 H 1.08998 * 113.77249 * 41.05527 * 10 9 7 30 30 H 1.09004 * 113.77242 * 269.65690 * 10 9 7 31 31 H 1.08999 * 113.74165 * 269.15649 * 11 10 9 32 32 H 1.08997 * 110.24641 * 78.03488 * 13 12 11 33 33 H 1.09003 * 110.24346 * 316.03587 * 13 12 11 34 34 H 0.97005 * 119.99975 * 21.88379 * 16 14 13 35 35 H 1.09006 * 109.46979 * 299.99978 * 19 17 16 36 36 H 1.09007 * 109.47284 * 59.99434 * 19 17 16 37 37 H 1.08994 * 109.47091 * 300.00390 * 20 19 17 38 38 H 1.09001 * 109.46785 * 60.00331 * 20 19 17 39 39 H 1.08998 * 115.54762 * 29.41939 * 21 20 19 40 40 H 1.09005 * 117.49235 * 0.02562 * 22 21 20 41 41 H 1.08994 * 117.50097 * 145.01988 * 22 21 20 42 42 H 1.08996 * 117.49593 * 214.98130 * 23 21 20 43 43 H 1.09002 * 117.49585 * 359.97438 * 23 21 20 44 44 H 1.09004 * 110.48489 * 143.48083 * 24 14 13 45 45 H 1.09003 * 110.48700 * 265.98876 * 24 14 13 46 46 H 1.08999 * 113.76717 * 90.38354 * 27 9 7 47 47 H 1.09000 * 113.83958 * 318.91790 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 1.7202 -3.8101 -0.0029 11 6 0.3471 -4.0835 0.6373 12 7 -0.3333 -5.2614 0.0934 13 6 -0.7608 -6.4144 0.8946 14 6 -1.0121 -7.5513 -0.1207 15 1 -0.1195 -8.1634 -0.2499 16 7 -2.1545 -8.3740 0.2846 17 6 -2.2777 -9.6326 -0.1815 18 8 -1.4430 -10.0839 -0.9368 19 6 -3.4531 -10.4787 0.2349 20 6 -3.3539 -11.8527 -0.4308 21 6 -4.5469 -12.7120 -0.0075 22 6 -4.2548 -13.9762 0.8033 23 6 -4.6926 -14.0886 -0.6592 24 6 -1.3308 -6.7583 -1.4094 25 6 -0.6459 -5.4253 -1.2036 26 8 -0.4133 -4.6210 -2.0811 27 6 -0.1058 -2.7570 0.0001 28 1 -0.4850 0.8400 -0.0004 29 1 2.5624 -4.0330 0.6521 30 1 1.8319 -4.2342 -1.0008 31 1 0.3596 -4.0654 1.7271 32 1 -1.6788 -6.1798 1.4333 33 1 0.0252 -6.7001 1.5937 34 1 -2.8223 -8.0130 0.8885 35 1 -3.4489 -10.5984 1.3184 36 1 -4.3785 -9.9920 -0.0732 37 1 -3.3582 -11.7327 -1.5141 38 1 -2.4285 -12.3396 -0.1229 39 1 -5.4611 -12.1655 0.2243 40 1 -3.2126 -14.1954 1.0354 41 1 -4.9769 -14.2616 1.5681 42 1 -5.7027 -14.4479 -0.8558 43 1 -3.9388 -14.3818 -1.3898 44 1 -0.9207 -7.2674 -2.2817 45 1 -2.4070 -6.6238 -1.5183 46 1 -0.5311 -2.8713 -0.9969 47 1 -0.7189 -2.1405 0.6574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108523152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:50 Heat of formation + Delta-G solvation = -12.069493 kcal Electronic energy + Delta-G solvation = -26538.759555 eV Core-core repulsion = 22723.153162 eV Total energy + Delta-G solvation = -3815.606393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90021 -40.63236 -38.98425 -38.35767 -37.59262 -35.22392 -34.17591 -33.16695 -31.50350 -29.19891 -28.45961 -26.62862 -26.00265 -25.13764 -23.18146 -22.72380 -22.12723 -21.50142 -21.14170 -19.78236 -18.81035 -18.12292 -17.82092 -17.50972 -17.02154 -16.65133 -16.52589 -16.10548 -15.86719 -15.61258 -15.29538 -14.99336 -14.78457 -14.64262 -14.42017 -14.10610 -13.97215 -13.62593 -13.43572 -13.28405 -12.97646 -12.83987 -12.76895 -12.59336 -12.38829 -12.24600 -12.17404 -12.05719 -12.03839 -11.88117 -11.52703 -11.19213 -11.12019 -10.84920 -10.70996 -10.63602 -10.07111 -9.58455 -8.95451 -7.93837 -5.28412 1.42708 1.45485 1.55640 1.56955 1.69786 1.86650 2.22045 2.47935 2.96857 3.24554 3.34107 3.45923 3.49977 3.73410 3.77719 3.87532 3.94608 4.03521 4.10498 4.15086 4.23869 4.39851 4.49623 4.51665 4.57805 4.64521 4.66855 4.75792 4.80954 4.84714 4.85626 4.90718 4.95689 5.11391 5.12988 5.19944 5.21436 5.22616 5.32476 5.44543 5.46661 5.53885 5.83315 5.88381 6.24023 6.60422 6.87574 7.21086 7.32694 7.56061 8.51617 9.23717 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.050166 B = 0.001915 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.016154 B =14618.057622 C =14652.739149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.284 1.284 7 C -0.238 4.238 8 H 0.085 0.915 9 N -0.635 5.635 10 C 0.111 3.889 11 C 0.137 3.863 12 N -0.605 5.605 13 C 0.100 3.900 14 C 0.149 3.851 15 H 0.103 0.897 16 N -0.705 5.705 17 C 0.513 3.487 18 O -0.584 6.584 19 C -0.128 4.128 20 C -0.074 4.074 21 C -0.151 4.151 22 C -0.181 4.181 23 C -0.192 4.192 24 C -0.154 4.154 25 C 0.503 3.497 26 O -0.574 6.574 27 C 0.149 3.851 28 H 0.249 0.751 29 H 0.069 0.931 30 H 0.021 0.979 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.423 0.577 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.121 0.879 46 H 0.021 0.979 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 -28.405 8.028 32.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.813 3.187 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.211 1.211 7 C -0.366 4.366 8 H 0.103 0.897 9 N -0.362 5.362 10 C -0.016 4.016 11 C 0.033 3.967 12 N -0.338 5.338 13 C -0.023 4.023 14 C 0.042 3.958 15 H 0.121 0.879 16 N -0.359 5.359 17 C 0.301 3.699 18 O -0.464 6.464 19 C -0.167 4.167 20 C -0.112 4.112 21 C -0.169 4.169 22 C -0.218 4.218 23 C -0.229 4.229 24 C -0.195 4.195 25 C 0.291 3.709 26 O -0.453 6.453 27 C 0.022 3.978 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.158 0.842 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.262 0.738 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.108 0.892 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.113 0.887 45 H 0.139 0.861 46 H 0.039 0.961 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.594 -27.932 7.111 31.068 hybrid contribution 0.265 1.471 -0.561 1.597 sum -11.329 -26.461 6.550 29.520 Atomic orbital electron populations 1.70044 1.06639 1.25650 1.57938 1.25731 0.96646 1.01155 1.02630 0.84919 0.78161 0.78847 0.76813 1.18769 1.22308 1.21071 1.19485 0.90871 0.83167 1.43060 0.89688 1.46153 1.03605 1.00559 1.85842 1.23014 0.96962 0.84219 0.97370 1.23398 0.91494 0.82552 0.99236 1.48457 1.57730 1.19330 1.08297 1.22548 1.03434 0.82807 0.93464 1.21510 0.91172 0.91254 0.91833 0.87933 1.45801 1.26437 1.13339 1.50286 1.21402 0.87563 0.81758 0.79151 1.90730 1.45020 1.73223 1.37396 1.21686 0.96341 0.94451 1.04236 1.20859 0.96543 0.93850 0.99933 1.22370 1.00215 0.89775 1.04576 1.23120 1.02488 1.01814 0.94403 1.23043 1.02961 1.00689 0.96246 1.22750 1.03257 0.92251 1.01291 1.21489 0.78147 0.88830 0.82399 1.90759 1.56706 1.50259 1.47602 1.22597 0.87303 0.90608 0.97248 0.94197 0.91290 0.96164 0.84231 0.87527 0.87078 0.73841 0.85911 0.86169 0.92649 0.92673 0.86042 0.89187 0.87807 0.88040 0.89594 0.88663 0.86126 0.96090 0.93756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 11.39 21.65 0.25 -60.18 16 2 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 3 Si 0.99 47.54 29.55 68.60 2.03 49.56 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.24 -14.14 10.70 84.03 0.90 -13.24 16 8 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 9 N -0.63 -35.17 3.70 -716.61 -2.65 -37.82 16 10 C 0.11 4.85 8.44 86.49 0.73 5.58 16 11 C 0.14 5.06 4.81 46.75 0.22 5.29 16 12 N -0.60 -17.53 3.16 -799.66 -2.52 -20.05 16 13 C 0.10 1.53 7.07 86.83 0.61 2.14 16 14 C 0.15 2.38 3.48 46.05 0.16 2.54 16 15 H 0.10 1.93 7.63 -2.39 -0.02 1.91 16 16 N -0.70 -6.99 5.17 -437.52 -2.26 -9.26 16 17 C 0.51 7.24 7.83 87.65 0.69 7.93 16 18 O -0.58 -14.29 15.67 -3.02 -0.05 -14.34 16 19 C -0.13 -0.87 5.66 29.85 0.17 -0.70 16 20 C -0.07 -0.85 4.79 30.59 0.15 -0.70 16 21 C -0.15 -1.30 5.73 -10.79 -0.06 -1.36 16 22 C -0.18 -1.57 10.18 30.62 0.31 -1.26 16 23 C -0.19 -1.89 10.25 30.62 0.31 -1.58 16 24 C -0.15 -3.53 6.59 30.59 0.20 -3.33 16 25 C 0.50 17.24 7.42 87.90 0.65 17.90 16 26 O -0.57 -27.29 14.61 -3.04 -0.04 -27.33 16 27 C 0.15 7.69 6.90 86.45 0.60 8.28 16 28 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.02 0.98 7.25 -2.39 -0.02 0.97 16 31 H 0.14 4.29 8.14 -2.39 -0.02 4.27 16 32 H 0.11 1.04 7.78 -2.39 -0.02 1.02 16 33 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.42 1.17 8.40 -92.70 -0.78 0.39 16 35 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 36 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 38 H 0.05 0.81 7.83 -2.39 -0.02 0.80 16 39 H 0.12 0.66 8.08 -2.39 -0.02 0.64 16 40 H 0.09 0.86 8.03 -2.38 -0.02 0.84 16 41 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.12 2.36 8.08 -2.39 -0.02 2.34 16 46 H 0.02 1.25 5.72 -2.39 -0.01 1.23 16 47 H 0.04 2.48 7.16 -2.39 -0.02 2.46 16 Total: -1.00 -88.09 383.40 1.05 -87.04 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.19 Total: 8.54 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 6.11 Total: 23.83 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -7.19 Total: -127.31 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.09 Total: -41.67 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal Total: -88.09 1.05 -87.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108523152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.975 kcal (2) G-P(sol) polarization free energy of solvation -88.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds