Wall clock time and date at job start Fri Apr 10 2020 18:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.50696 * 115.54987 * 294.56681 * 3 2 1 5 5 O 1.21287 * 119.99854 * 99.87135 * 4 3 2 6 6 N 1.34772 * 120.00103 * 279.86782 * 4 3 2 7 7 C 1.46505 * 120.00356 * 174.67389 * 6 4 3 8 8 H 1.09000 * 110.85365 * 31.20381 * 7 6 4 9 9 C 1.54628 * 110.99800 * 267.39908 * 7 6 4 10 10 C 1.51284 * 104.25642 * 266.44429 * 9 7 6 11 11 O 1.21284 * 124.94882 * 164.00750 * 10 9 7 12 12 N 1.34425 * 110.11341 * 344.14603 * 10 9 7 13 13 C 1.46499 * 124.35229 * 179.43751 * 12 10 9 14 14 C 1.53498 * 114.20544 * 59.70054 * 13 12 10 15 15 N 1.47074 * 87.98284 * 220.34710 * 14 13 12 16 16 C 1.36937 * 136.05367 * 206.85859 * 15 14 13 17 17 H 1.07999 * 120.00011 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00014 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99941 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00436 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46979 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47166 * 120.00093 * 20 18 16 23 23 H 1.48500 * 109.47174 * 240.00718 * 20 18 16 24 24 C 1.47063 * 87.88448 * 27.12162 * 15 14 13 25 25 C 1.46765 * 111.29859 * 359.17260 * 12 10 9 26 26 C 1.53003 * 117.51435 * 80.26711 * 3 2 1 27 27 C 1.53002 * 60.00122 * 107.48127 * 26 3 2 28 28 H 1.09004 * 109.47109 * 298.56985 * 1 2 3 29 29 H 1.09000 * 109.47350 * 58.57031 * 1 2 3 30 30 H 1.08998 * 109.47395 * 178.57397 * 1 2 3 31 31 H 1.09007 * 109.47624 * 240.00232 * 2 1 3 32 32 H 1.08997 * 109.47487 * 120.00065 * 2 1 3 33 33 H 0.97004 * 119.99979 * 354.67128 * 6 4 3 34 34 H 1.09000 * 110.49028 * 25.33623 * 9 7 6 35 35 H 1.09001 * 110.48823 * 147.85110 * 9 7 6 36 36 H 1.08991 * 113.41692 * 192.90082 * 13 12 10 37 37 H 1.08993 * 113.47176 * 105.56812 * 14 13 12 38 38 H 1.09001 * 113.46611 * 335.12524 * 14 13 12 39 39 H 0.97002 * 120.00311 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.47009 * 87.66111 * 24 15 14 41 41 H 1.09008 * 113.46559 * 218.09818 * 24 15 14 42 42 H 1.08996 * 110.24601 * 136.28091 * 25 12 10 43 43 H 1.09001 * 110.24440 * 258.19371 * 25 12 10 44 44 H 1.09005 * 117.49436 * 214.96881 * 26 3 2 45 45 H 1.08998 * 117.50021 * 359.97438 * 26 3 2 46 46 H 1.08996 * 117.50105 * 252.50903 * 27 26 3 47 47 H 1.08996 * 117.50142 * 107.48533 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7237 2.2437 -1.2365 5 8 0.7937 3.0222 -1.2332 6 7 2.4742 2.0952 -2.3460 7 6 2.0981 2.7847 -3.5827 8 1 1.6018 3.7303 -3.3642 9 6 1.2075 1.8845 -4.4701 10 6 2.1818 1.2027 -5.4053 11 8 1.9336 0.2199 -6.0713 12 7 3.3637 1.8429 -5.3885 13 6 4.5342 1.4382 -6.1710 14 6 4.3032 1.4258 -7.6885 15 7 5.0877 0.1830 -7.7454 16 6 5.8606 -0.4531 -8.6798 17 1 5.9945 -0.0157 -9.6582 18 6 6.4728 -1.6596 -8.3693 19 7 6.3100 -2.1924 -7.1767 20 14 7.5277 -2.5271 -9.6436 21 1 7.5512 -1.7269 -10.8944 22 1 8.9111 -2.6737 -9.1242 23 1 6.9597 -3.8699 -9.9252 24 6 4.6714 -0.0790 -6.3595 25 6 3.3289 3.0030 -4.4903 26 6 2.0593 2.1854 1.3374 27 6 3.3710 1.7212 0.7012 28 1 -0.3633 0.4915 0.9026 29 1 -0.3634 0.5359 -0.8769 30 1 -0.3634 -1.0273 -0.0256 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.2636 1.5317 -2.3257 34 1 0.6812 1.1495 -3.8612 35 1 0.4980 2.4886 -5.0356 36 1 5.4541 1.9352 -5.8631 37 1 4.7749 2.2609 -8.2062 38 1 3.2579 1.2924 -7.9673 39 1 6.7375 -3.0356 -6.9598 40 1 3.7242 -0.6131 -6.2843 41 1 5.4562 -0.5233 -5.7471 42 1 4.2379 3.0427 -3.8901 43 1 3.2168 3.9221 -5.0654 44 1 1.8433 3.2537 1.3229 45 1 1.7082 1.6466 2.2175 46 1 3.8832 0.8769 1.1627 47 1 4.0179 2.4840 0.2680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108572443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:58 Heat of formation + Delta-G solvation = 22.087791 kcal Electronic energy + Delta-G solvation = -27808.158996 eV Core-core repulsion = 23994.033774 eV Total energy + Delta-G solvation = -3814.125222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.93532 -39.99718 -37.69779 -37.11412 -36.28443 -33.92968 -32.20189 -32.18995 -30.45105 -27.63454 -27.25224 -25.07232 -24.53894 -23.58805 -23.22821 -22.68641 -21.31908 -20.53170 -19.76678 -18.38788 -17.11288 -17.05016 -16.72605 -16.26742 -15.78628 -15.42640 -15.15005 -14.68034 -14.49815 -14.10951 -14.07426 -13.97848 -13.53906 -13.45425 -13.34334 -12.87546 -12.70564 -12.51057 -12.02824 -11.96027 -11.86721 -11.82232 -11.73299 -11.47403 -11.45441 -11.35363 -10.88188 -10.77693 -10.74118 -10.36137 -10.12201 -10.03381 -9.91379 -9.60336 -9.39502 -9.16480 -8.67626 -8.16531 -6.83372 -5.74879 -3.07046 2.34006 2.76894 2.92205 3.22098 3.32430 3.40409 3.45749 3.48019 4.20592 4.25098 4.37179 4.41883 4.49296 4.51101 4.65419 4.75354 5.02832 5.06677 5.17685 5.23984 5.27433 5.29760 5.37252 5.41795 5.50385 5.52086 5.57146 5.60461 5.65619 5.71422 5.72545 5.75772 5.81645 5.84009 6.05771 6.21493 6.29537 6.46340 6.57400 6.86625 7.24035 7.24986 7.47748 7.55728 7.63408 7.96911 7.98418 8.54351 9.05283 9.71615 10.65387 11.42694 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.002929 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.073590 B = 9558.746202 C =10136.921475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.080 4.080 3 C -0.157 4.157 4 C 0.557 3.443 5 O -0.534 6.534 6 N -0.716 5.716 7 C 0.132 3.868 8 H 0.117 0.883 9 C -0.167 4.167 10 C 0.512 3.488 11 O -0.510 6.510 12 N -0.606 5.606 13 C 0.092 3.908 14 C 0.111 3.889 15 N -0.604 5.604 16 C -0.215 4.215 17 H 0.082 0.918 18 C -0.008 4.008 19 N -0.917 5.917 20 Si 0.914 3.086 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.142 3.858 25 C 0.096 3.904 26 C -0.144 4.144 27 C -0.164 4.164 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.407 0.593 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.253 0.747 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 11.604 18.008 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.160 4.160 4 C 0.343 3.657 5 O -0.410 6.410 6 N -0.368 5.368 7 C 0.027 3.973 8 H 0.135 0.865 9 C -0.209 4.209 10 C 0.299 3.701 11 O -0.384 6.384 12 N -0.341 5.341 13 C -0.011 4.011 14 C -0.017 4.017 15 N -0.329 5.329 16 C -0.342 4.342 17 H 0.100 0.900 18 C -0.205 4.205 19 N -0.564 5.564 20 Si 0.744 3.256 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.016 3.984 25 C -0.029 4.029 26 C -0.181 4.181 27 C -0.201 4.201 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.242 0.758 34 H 0.119 0.881 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.349 11.334 17.435 22.408 hybrid contribution 0.903 -0.785 -0.726 1.400 sum -7.446 10.548 16.709 21.116 Atomic orbital electron populations 1.21723 0.94883 1.01699 1.02485 1.21019 0.96563 0.91067 1.03094 1.21499 1.03975 0.97723 0.92797 1.19522 0.81642 0.81320 0.83199 1.90698 1.29807 1.36613 1.83878 1.45997 1.30337 1.50569 1.09892 1.21864 0.95200 0.96901 0.83367 0.86485 1.22835 0.98563 1.00949 0.98555 1.20683 0.83112 0.83623 0.82677 1.90770 1.78945 1.24876 1.43854 1.48397 1.12881 1.28071 1.44708 1.23781 0.85796 1.00447 0.91070 1.22762 0.95715 0.90691 0.92544 1.45283 1.53139 1.22018 1.12494 1.18951 1.20208 1.02086 0.92981 0.89997 1.24814 1.00965 0.97445 0.97261 1.69853 1.47243 1.19730 1.19601 0.86011 0.79709 0.79509 0.80327 1.20428 1.21681 1.21689 1.22654 0.99555 0.89343 0.86890 1.22335 0.98309 0.90302 0.91920 1.22971 0.99955 1.00976 0.94244 1.23162 0.90154 1.03871 1.02918 0.92458 0.92488 0.92364 0.90846 0.90753 0.75799 0.88101 0.87179 0.87318 0.94377 0.94407 0.93717 0.92149 0.91460 0.89788 0.89707 0.88158 0.87899 0.87673 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.80 37.15 0.36 -0.95 16 2 C -0.08 -0.64 5.81 -26.74 -0.16 -0.80 16 3 C -0.16 -1.32 1.87 -155.66 -0.29 -1.61 16 4 C 0.56 5.86 6.36 -10.99 -0.07 5.79 16 5 O -0.53 -7.29 16.61 5.55 0.09 -7.20 16 6 N -0.72 -6.67 5.12 -52.23 -0.27 -6.94 16 7 C 0.13 1.25 3.57 -66.30 -0.24 1.02 16 8 H 0.12 1.05 7.48 -51.93 -0.39 0.66 16 9 C -0.17 -1.96 6.58 -26.74 -0.18 -2.13 16 10 C 0.51 8.41 7.49 -10.86 -0.08 8.33 16 11 O -0.51 -11.13 14.48 5.55 0.08 -11.05 16 12 N -0.61 -8.90 3.18 -164.63 -0.52 -9.42 16 13 C 0.09 1.71 5.01 -67.81 -0.34 1.37 16 14 C 0.11 2.40 8.24 -8.50 -0.07 2.33 16 15 N -0.60 -16.21 3.78 -184.77 -0.70 -16.91 16 16 C -0.21 -6.22 10.75 -15.06 -0.16 -6.39 16 17 H 0.08 2.28 7.83 -52.49 -0.41 1.87 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.88 11.51 55.49 0.64 -27.24 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 C 0.14 3.49 6.80 -8.51 -0.06 3.43 16 25 C 0.10 0.92 6.97 -3.12 -0.02 0.90 16 26 C -0.14 -1.06 9.88 -26.73 -0.26 -1.32 16 27 C -0.16 -1.08 9.92 -26.73 -0.27 -1.34 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.59 7.67 -51.93 -0.40 0.20 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 33 H 0.41 3.49 8.67 -40.82 -0.35 3.13 16 34 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 35 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.11 1.84 8.14 -51.93 -0.42 1.41 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.88 7.35 -51.93 -0.38 0.50 16 39 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.06 1.64 5.43 -51.93 -0.28 1.36 16 41 H 0.07 1.80 7.12 -51.92 -0.37 1.43 16 42 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -36.16 383.78 -9.47 -45.63 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.63 Total: 1.54 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -1.92 Total: 8.30 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.85 Total: -60.51 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.17 Total: -18.25 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.16 -9.47 -45.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108572443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.714 kcal (2) G-P(sol) polarization free energy of solvation -36.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds