Wall clock time and date at job start Fri Apr 10 2020 18:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.50696 * 115.54987 * 294.56681 * 3 2 1 5 5 O 1.21287 * 119.99854 * 99.87135 * 4 3 2 6 6 N 1.34772 * 120.00103 * 279.86782 * 4 3 2 7 7 C 1.46505 * 120.00356 * 174.67389 * 6 4 3 8 8 H 1.09000 * 110.85365 * 31.20381 * 7 6 4 9 9 C 1.54628 * 110.99800 * 267.39908 * 7 6 4 10 10 C 1.51284 * 104.25642 * 266.44429 * 9 7 6 11 11 O 1.21284 * 124.94882 * 164.00750 * 10 9 7 12 12 N 1.34425 * 110.11341 * 344.14603 * 10 9 7 13 13 C 1.46499 * 124.35229 * 179.43751 * 12 10 9 14 14 C 1.53498 * 114.20544 * 59.70054 * 13 12 10 15 15 N 1.47074 * 87.98284 * 220.34710 * 14 13 12 16 16 C 1.36937 * 136.05367 * 206.85859 * 15 14 13 17 17 H 1.07999 * 120.00011 * 0.02562 * 16 15 14 18 18 C 1.38809 * 120.00014 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99941 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00436 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46979 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47166 * 120.00093 * 20 18 16 23 23 H 1.48500 * 109.47174 * 240.00718 * 20 18 16 24 24 C 1.47063 * 87.88448 * 27.12162 * 15 14 13 25 25 C 1.46765 * 111.29859 * 359.17260 * 12 10 9 26 26 C 1.53003 * 117.51435 * 80.26711 * 3 2 1 27 27 C 1.53002 * 60.00122 * 107.48127 * 26 3 2 28 28 H 1.09004 * 109.47109 * 298.56985 * 1 2 3 29 29 H 1.09000 * 109.47350 * 58.57031 * 1 2 3 30 30 H 1.08998 * 109.47395 * 178.57397 * 1 2 3 31 31 H 1.09007 * 109.47624 * 240.00232 * 2 1 3 32 32 H 1.08997 * 109.47487 * 120.00065 * 2 1 3 33 33 H 0.97004 * 119.99979 * 354.67128 * 6 4 3 34 34 H 1.09000 * 110.49028 * 25.33623 * 9 7 6 35 35 H 1.09001 * 110.48823 * 147.85110 * 9 7 6 36 36 H 1.08991 * 113.41692 * 192.90082 * 13 12 10 37 37 H 1.08993 * 113.47176 * 105.56812 * 14 13 12 38 38 H 1.09001 * 113.46611 * 335.12524 * 14 13 12 39 39 H 0.97002 * 120.00311 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.47009 * 87.66111 * 24 15 14 41 41 H 1.09008 * 113.46559 * 218.09818 * 24 15 14 42 42 H 1.08996 * 110.24601 * 136.28091 * 25 12 10 43 43 H 1.09001 * 110.24440 * 258.19371 * 25 12 10 44 44 H 1.09005 * 117.49436 * 214.96881 * 26 3 2 45 45 H 1.08998 * 117.50021 * 359.97438 * 26 3 2 46 46 H 1.08996 * 117.50105 * 252.50903 * 27 26 3 47 47 H 1.08996 * 117.50142 * 107.48533 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7237 2.2437 -1.2365 5 8 0.7937 3.0222 -1.2332 6 7 2.4742 2.0952 -2.3460 7 6 2.0981 2.7847 -3.5827 8 1 1.6018 3.7303 -3.3642 9 6 1.2075 1.8845 -4.4701 10 6 2.1818 1.2027 -5.4053 11 8 1.9336 0.2199 -6.0713 12 7 3.3637 1.8429 -5.3885 13 6 4.5342 1.4382 -6.1710 14 6 4.3032 1.4258 -7.6885 15 7 5.0877 0.1830 -7.7454 16 6 5.8606 -0.4531 -8.6798 17 1 5.9945 -0.0157 -9.6582 18 6 6.4728 -1.6596 -8.3693 19 7 6.3100 -2.1924 -7.1767 20 14 7.5277 -2.5271 -9.6436 21 1 7.5512 -1.7269 -10.8944 22 1 8.9111 -2.6737 -9.1242 23 1 6.9597 -3.8699 -9.9252 24 6 4.6714 -0.0790 -6.3595 25 6 3.3289 3.0030 -4.4903 26 6 2.0593 2.1854 1.3374 27 6 3.3710 1.7212 0.7012 28 1 -0.3633 0.4915 0.9026 29 1 -0.3634 0.5359 -0.8769 30 1 -0.3634 -1.0273 -0.0256 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.2636 1.5317 -2.3257 34 1 0.6812 1.1495 -3.8612 35 1 0.4980 2.4886 -5.0356 36 1 5.4541 1.9352 -5.8631 37 1 4.7749 2.2609 -8.2062 38 1 3.2579 1.2924 -7.9673 39 1 6.7375 -3.0356 -6.9598 40 1 3.7242 -0.6131 -6.2843 41 1 5.4562 -0.5233 -5.7471 42 1 4.2379 3.0427 -3.8901 43 1 3.2168 3.9221 -5.0654 44 1 1.8433 3.2537 1.3229 45 1 1.7082 1.6466 2.2175 46 1 3.8832 0.8769 1.1627 47 1 4.0179 2.4840 0.2680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108572443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:57 Heat of formation + Delta-G solvation = -3.438856 kcal Electronic energy + Delta-G solvation = -27809.265915 eV Core-core repulsion = 23994.033774 eV Total energy + Delta-G solvation = -3815.232141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02453 -41.00138 -39.19039 -38.13257 -37.40020 -35.10912 -34.13550 -32.82909 -31.72763 -29.25983 -28.49832 -26.42484 -25.85498 -25.25735 -24.01464 -23.24746 -22.32603 -22.06572 -20.58940 -19.79811 -18.79033 -17.99768 -17.82944 -17.59799 -16.98453 -16.49989 -16.38773 -16.09365 -15.79537 -15.47479 -15.09107 -14.97009 -14.76360 -14.54035 -14.23845 -14.12542 -13.99493 -13.52042 -13.40638 -13.36219 -13.19823 -12.87551 -12.79537 -12.73225 -12.60411 -12.45711 -12.37327 -12.11933 -12.01342 -11.92958 -11.38573 -11.34623 -11.08464 -10.96235 -10.70923 -10.62397 -10.13081 -9.55212 -8.94965 -7.94081 -5.29012 1.43237 1.45922 1.52901 1.56092 1.60327 1.94816 2.07470 2.47495 2.74483 3.26053 3.32669 3.45086 3.53903 3.62094 3.74290 3.74874 3.83355 3.93471 4.03779 4.21534 4.24584 4.40740 4.53518 4.54709 4.60782 4.61928 4.68062 4.74159 4.78689 4.79540 4.84841 4.91806 5.00954 5.03675 5.07352 5.16962 5.19232 5.22442 5.24609 5.35954 5.42655 5.45685 5.84955 5.88643 6.25469 6.47019 6.86202 7.17942 7.23736 7.55098 8.55681 9.23777 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.002929 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.073590 B = 9558.746202 C =10136.921475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.173 4.173 4 C 0.557 3.443 5 O -0.568 6.568 6 N -0.711 5.711 7 C 0.142 3.858 8 H 0.134 0.866 9 C -0.155 4.155 10 C 0.503 3.497 11 O -0.574 6.574 12 N -0.602 5.602 13 C 0.134 3.866 14 C 0.111 3.889 15 N -0.635 5.635 16 C -0.232 4.232 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.986 3.014 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.295 1.295 24 C 0.138 3.862 25 C 0.097 3.903 26 C -0.144 4.144 27 C -0.148 4.148 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.411 0.589 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.063 0.937 38 H 0.020 0.980 39 H 0.249 0.751 40 H 0.028 0.972 41 H 0.038 0.962 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.091 0.909 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.851 13.720 19.041 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.176 4.176 4 C 0.345 3.655 5 O -0.446 6.446 6 N -0.363 5.363 7 C 0.037 3.963 8 H 0.152 0.848 9 C -0.197 4.197 10 C 0.292 3.708 11 O -0.454 6.454 12 N -0.335 5.335 13 C 0.030 3.970 14 C -0.016 4.016 15 N -0.361 5.361 16 C -0.360 4.360 17 H 0.105 0.895 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.813 3.187 21 H -0.187 1.187 22 H -0.211 1.211 23 H -0.223 1.223 24 C 0.012 3.988 25 C -0.025 4.025 26 C -0.181 4.181 27 C -0.184 4.184 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.248 0.752 34 H 0.111 0.889 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.127 0.873 43 H 0.135 0.865 44 H 0.109 0.891 45 H 0.134 0.866 46 H 0.138 0.862 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.358 13.522 18.494 24.063 hybrid contribution 0.505 -1.426 -1.027 1.829 sum -6.853 12.095 17.467 22.324 Atomic orbital electron populations 1.21710 0.95643 1.01734 1.01581 1.21015 0.95876 0.91104 1.03521 1.21489 1.06057 0.97586 0.92456 1.19876 0.80963 0.80832 0.83871 1.90678 1.31204 1.38227 1.84535 1.46019 1.30265 1.50317 1.09661 1.21872 0.94715 0.96779 0.82937 0.84788 1.22793 0.98000 1.00958 0.97903 1.21510 0.84188 0.82809 0.82324 1.90741 1.80225 1.27815 1.46575 1.48354 1.11157 1.29398 1.44600 1.23121 0.88112 0.95915 0.89875 1.22826 0.94155 0.89407 0.95183 1.45700 1.53525 1.23793 1.13090 1.19387 1.20216 1.02623 0.93796 0.89495 1.25743 1.02677 0.98311 0.99376 1.70058 1.48516 1.19895 1.21583 0.84912 0.77712 0.77758 0.78321 1.18714 1.21098 1.22265 1.22493 0.96754 0.93478 0.86123 1.22691 0.99384 0.88930 0.91447 1.23035 1.00564 1.00513 0.94028 1.23257 0.89489 1.04192 1.01509 0.91989 0.94760 0.91806 0.91852 0.88841 0.75247 0.88901 0.85096 0.84265 0.91886 0.96189 0.94217 0.95467 0.94376 0.87322 0.86543 0.89059 0.86551 0.86206 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.80 71.98 0.71 -1.83 16 2 C -0.08 -1.16 5.81 30.59 0.18 -0.98 16 3 C -0.17 -2.63 1.87 -52.93 -0.10 -2.73 16 4 C 0.56 10.95 6.36 87.66 0.56 11.50 16 5 O -0.57 -14.89 16.61 -3.05 -0.05 -14.94 16 6 N -0.71 -11.84 5.12 -437.53 -2.24 -14.08 16 7 C 0.14 2.30 3.57 46.05 0.16 2.47 16 8 H 0.13 1.90 7.48 -2.39 -0.02 1.89 16 9 C -0.16 -3.43 6.58 30.59 0.20 -3.23 16 10 C 0.50 16.48 7.49 87.90 0.66 17.14 16 11 O -0.57 -26.33 14.48 -3.04 -0.04 -26.37 16 12 N -0.60 -16.65 3.18 -793.35 -2.52 -19.16 16 13 C 0.13 4.81 5.01 45.46 0.23 5.04 16 14 C 0.11 4.76 8.24 83.18 0.69 5.45 16 15 N -0.63 -34.71 3.78 -738.50 -2.79 -37.50 16 16 C -0.23 -13.64 10.75 84.03 0.90 -12.73 16 17 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 19 N -0.95 -59.69 11.51 21.65 0.25 -59.44 16 20 Si 0.99 46.90 29.55 68.60 2.03 48.93 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 24 C 0.14 7.03 6.80 83.18 0.57 7.59 16 25 C 0.10 1.49 6.97 86.83 0.61 2.09 16 26 C -0.14 -1.83 9.88 30.60 0.30 -1.53 16 27 C -0.15 -1.56 9.92 30.60 0.30 -1.26 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.03 0.72 7.67 -2.39 -0.02 0.71 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 33 H 0.41 6.21 8.67 -92.71 -0.80 5.41 16 34 H 0.09 2.26 8.09 -2.39 -0.02 2.24 16 35 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.14 4.25 8.14 -2.39 -0.02 4.23 16 37 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.02 0.95 7.35 -2.39 -0.02 0.93 16 39 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 40 H 0.03 1.59 5.43 -2.39 -0.01 1.58 16 41 H 0.04 2.12 7.12 -2.38 -0.02 2.11 16 42 H 0.11 1.25 8.08 -2.39 -0.02 1.23 16 43 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.12 0.94 8.14 -2.39 -0.02 0.93 16 47 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -83.65 383.78 1.22 -82.43 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.17 Total: 16.71 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 6.43 Total: 23.43 kcal Atomic # 7 Polarization: -122.89 SS G_CDS: -7.30 Total: -130.19 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.09 Total: -41.31 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -83.65 1.22 -82.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108572443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.989 kcal (2) G-P(sol) polarization free energy of solvation -83.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds