Wall clock time and date at job start Fri Apr 10 2020 18:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47289 * 2 1 4 4 C 1.50701 * 115.55060 * 294.73025 * 3 2 1 5 5 O 1.21278 * 120.00017 * 99.33948 * 4 3 2 6 6 N 1.34771 * 119.99816 * 279.33152 * 4 3 2 7 7 C 1.46499 * 119.99925 * 175.10115 * 6 4 3 8 8 H 1.09007 * 110.88858 * 328.81296 * 7 6 4 9 9 C 1.54632 * 110.96912 * 92.62296 * 7 6 4 10 10 C 1.51289 * 104.25507 * 142.70199 * 9 7 6 11 11 O 1.21284 * 124.94196 * 164.01254 * 10 9 7 12 12 N 1.34414 * 110.11386 * 344.14473 * 10 9 7 13 13 C 1.46501 * 124.34957 * 179.44311 * 12 10 9 14 14 C 1.53953 * 113.73937 * 320.95216 * 13 12 10 15 15 N 1.47820 * 86.03170 * 90.88596 * 14 13 12 16 16 C 1.36939 * 134.45405 * 204.64166 * 15 14 13 17 17 H 1.07996 * 119.99838 * 183.71698 * 16 15 14 18 18 C 1.38813 * 119.99904 * 3.72001 * 16 15 14 19 19 N 1.31619 * 120.00296 * 4.99216 * 18 16 15 20 20 Si 1.86802 * 119.99850 * 184.99240 * 18 16 15 21 21 H 1.48497 * 109.47127 * 94.99610 * 20 18 16 22 22 H 1.48503 * 109.46791 * 214.99701 * 20 18 16 23 23 H 1.48497 * 109.47245 * 334.99571 * 20 18 16 24 24 C 1.47584 * 91.05117 * 24.55036 * 15 14 13 25 25 C 1.46759 * 111.30054 * 359.17268 * 12 10 9 26 26 C 1.53003 * 117.51479 * 80.43271 * 3 2 1 27 27 C 1.52993 * 60.00067 * 107.48166 * 26 3 2 28 28 H 1.08999 * 109.46736 * 295.70144 * 1 2 3 29 29 H 1.09001 * 109.47150 * 55.70293 * 1 2 3 30 30 H 1.09003 * 109.47262 * 175.70219 * 1 2 3 31 31 H 1.09006 * 109.46583 * 240.00383 * 2 1 3 32 32 H 1.09001 * 109.47514 * 120.00524 * 2 1 3 33 33 H 0.97001 * 120.00555 * 355.10047 * 6 4 3 34 34 H 1.08998 * 110.48252 * 261.59215 * 9 7 6 35 35 H 1.08996 * 110.48430 * 24.24066 * 9 7 6 36 36 H 1.09001 * 112.94274 * 189.36867 * 13 12 10 37 37 H 1.09000 * 113.76981 * 205.14612 * 14 13 12 38 38 H 1.08996 * 113.76930 * 336.55180 * 14 13 12 39 39 H 0.96994 * 120.00303 * 180.02562 * 19 18 16 40 40 H 1.09004 * 113.76471 * 221.15368 * 24 15 14 41 41 H 1.08994 * 113.77015 * 89.75625 * 24 15 14 42 42 H 1.09002 * 110.24750 * 136.28714 * 25 12 10 43 43 H 1.09004 * 110.24567 * 258.19432 * 25 12 10 44 44 H 1.09003 * 117.49628 * 214.97456 * 26 3 2 45 45 H 1.09005 * 117.49957 * 359.97438 * 26 3 2 46 46 H 1.09000 * 117.49798 * 252.51326 * 27 26 3 47 47 H 1.08996 * 117.50295 * 107.49070 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7204 2.2449 -1.2349 5 8 0.7846 3.0163 -1.2315 6 7 2.4747 2.1053 -2.3431 7 6 2.1013 2.8031 -3.5759 8 1 1.0195 2.9175 -3.6454 9 6 2.8100 4.1740 -3.6723 10 6 3.1392 4.3208 -5.1416 11 8 3.4479 5.3608 -5.6838 12 7 3.0370 3.1313 -5.7592 13 6 3.2767 2.9189 -7.1888 14 6 2.7445 4.0544 -8.0819 15 7 4.0821 4.6642 -7.9274 16 6 4.5686 5.9419 -8.0064 17 1 5.6286 6.1231 -7.9073 18 6 3.6992 7.0039 -8.2139 19 7 2.3997 6.7960 -8.2365 20 14 4.3736 8.7284 -8.4610 21 1 4.4978 9.0077 -9.9141 22 1 3.4496 9.7141 -7.8445 23 1 5.7092 8.8341 -7.8206 24 6 4.6820 3.3443 -7.6516 25 6 2.6605 2.0716 -4.8163 26 6 2.0630 2.1841 1.3381 27 6 3.3729 1.7205 0.6978 28 1 -0.3633 0.4457 0.9260 29 1 -0.3633 0.5791 -0.8490 30 1 -0.3634 -1.0248 -0.0770 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.2648 1.5430 -2.3244 34 1 2.1428 4.9720 -3.3464 35 1 3.7241 4.1734 -3.0787 36 1 2.9865 1.9235 -7.5250 37 1 2.5191 3.7423 -9.1017 38 1 1.9413 4.6327 -7.6253 39 1 1.7923 7.5381 -8.3818 40 1 5.4227 3.3568 -6.8520 41 1 5.0269 2.8232 -8.5446 42 1 1.8944 1.4317 -5.2542 43 1 3.5350 1.4803 -4.5447 44 1 1.8469 3.2524 1.3252 45 1 1.7143 1.6444 2.2187 46 1 3.8863 0.8757 1.1571 47 1 4.0187 2.4837 0.2637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108572444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:00 Heat of formation + Delta-G solvation = 40.244731 kcal Electronic energy + Delta-G solvation = -28078.770512 eV Core-core repulsion = 24265.432634 eV Total energy + Delta-G solvation = -3813.337878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.67792 -39.77091 -37.52208 -36.79960 -35.77951 -33.78413 -32.26403 -31.84265 -29.96167 -27.31740 -26.98885 -24.99811 -24.67630 -23.39191 -23.08225 -22.67830 -21.21320 -20.34006 -19.75628 -17.66957 -17.12119 -16.74853 -16.53980 -15.78093 -15.77157 -15.19726 -15.15027 -14.55146 -14.22079 -14.00849 -13.89990 -13.54644 -13.44348 -13.25912 -13.15177 -12.78141 -12.75529 -12.37387 -12.22179 -12.00453 -11.86632 -11.69973 -11.51561 -11.25729 -11.06068 -10.87507 -10.75103 -10.66363 -10.44853 -10.39505 -10.00541 -9.87576 -9.66801 -9.36794 -9.29699 -8.67969 -8.30987 -7.85241 -6.50898 -5.41841 -2.70770 2.40901 2.79132 3.29087 3.54791 3.58235 3.61168 3.63442 3.64723 4.19335 4.35183 4.45505 4.56233 4.59399 4.70203 4.79400 4.99224 5.02490 5.10059 5.19736 5.21082 5.26139 5.37168 5.48686 5.51156 5.55545 5.56058 5.63628 5.73544 5.74470 5.75808 5.80033 5.91320 5.99371 6.00322 6.09207 6.32744 6.38241 6.58201 6.60721 6.98135 7.29352 7.38176 7.61032 7.84212 7.96877 8.04877 8.29392 9.24059 9.33183 10.06057 10.89246 11.75817 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.022572 B = 0.002995 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.188796 B = 9345.518169 C = 9861.546536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.076 4.076 3 C -0.157 4.157 4 C 0.553 3.447 5 O -0.528 6.528 6 N -0.715 5.715 7 C 0.135 3.865 8 H 0.109 0.891 9 C -0.166 4.166 10 C 0.488 3.512 11 O -0.413 6.413 12 N -0.607 5.607 13 C 0.106 3.894 14 C 0.149 3.851 15 N -0.588 5.588 16 C -0.189 4.189 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.915 5.915 20 Si 0.900 3.100 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.285 1.285 24 C 0.104 3.896 25 C 0.109 3.891 26 C -0.144 4.144 27 C -0.165 4.165 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.402 0.598 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.244 0.756 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 -19.289 17.846 26.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 C -0.160 4.160 4 C 0.338 3.662 5 O -0.403 6.403 6 N -0.367 5.367 7 C 0.029 3.971 8 H 0.127 0.873 9 C -0.208 4.208 10 C 0.270 3.730 11 O -0.277 6.277 12 N -0.346 5.346 13 C 0.002 3.998 14 C 0.023 3.977 15 N -0.314 5.314 16 C -0.317 4.317 17 H 0.086 0.914 18 C -0.194 4.194 19 N -0.563 5.563 20 Si 0.733 3.267 21 H -0.223 1.223 22 H -0.221 1.221 23 H -0.211 1.211 24 C -0.024 4.024 25 C -0.016 4.016 26 C -0.182 4.182 27 C -0.202 4.202 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.237 0.763 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.175 -17.737 17.426 24.893 hybrid contribution 0.770 0.578 -0.121 0.970 sum -0.406 -17.159 17.305 24.373 Atomic orbital electron populations 1.21740 0.94873 1.01574 1.02774 1.20989 0.96571 0.91131 1.02703 1.21504 1.03807 0.97639 0.93058 1.19501 0.81906 0.81512 0.83242 1.90736 1.29703 1.36611 1.83213 1.45925 1.29824 1.50420 1.10533 1.21808 1.00928 0.91486 0.82847 0.87311 1.22827 1.02276 0.98347 0.97352 1.20623 0.79902 0.84643 0.87782 1.91212 1.40313 1.27599 1.68592 1.47795 1.71493 1.08142 1.07129 1.22898 0.98531 0.98613 0.79800 1.22676 0.92319 0.88677 0.94066 1.45545 1.03844 0.99874 1.82096 1.18634 0.91329 0.80990 1.40762 0.91352 1.24509 0.95186 0.96665 1.02999 1.69780 1.00566 1.29358 1.56600 0.86269 0.77620 0.85708 0.77145 1.22343 1.22088 1.21051 1.22979 0.94291 0.88567 0.96576 1.22001 0.99378 0.90935 0.89281 1.22979 0.99843 1.01231 0.94132 1.23156 0.90198 1.03835 1.03034 0.92403 0.92279 0.92494 0.91102 0.90898 0.76312 0.88456 0.88830 0.90373 0.95327 0.89734 0.94536 0.94385 0.94431 0.90467 0.91827 0.88038 0.87895 0.87799 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.84 37.16 0.37 -0.76 16 2 C -0.08 -0.48 5.81 -26.73 -0.16 -0.63 16 3 C -0.16 -1.24 1.87 -155.66 -0.29 -1.53 16 4 C 0.55 6.11 6.29 -10.99 -0.07 6.04 16 5 O -0.53 -8.14 16.70 5.56 0.09 -8.05 16 6 N -0.72 -6.71 5.15 -52.22 -0.27 -6.98 16 7 C 0.13 1.62 3.50 -66.30 -0.23 1.39 16 8 H 0.11 1.47 7.62 -51.93 -0.40 1.08 16 9 C -0.17 -2.57 6.59 -26.74 -0.18 -2.75 16 10 C 0.49 9.97 7.49 -10.86 -0.08 9.89 16 11 O -0.41 -11.08 12.91 5.55 0.07 -11.00 16 12 N -0.61 -10.41 3.16 -166.63 -0.53 -10.93 16 13 C 0.11 1.96 4.93 -70.14 -0.35 1.61 16 14 C 0.15 3.59 6.74 -2.83 -0.02 3.57 16 15 N -0.59 -15.59 2.18 -177.87 -0.39 -15.98 16 16 C -0.19 -5.65 8.96 -15.06 -0.13 -5.78 16 17 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 18 C 0.00 0.07 5.16 -17.43 -0.09 -0.02 16 19 N -0.91 -28.73 11.30 55.49 0.63 -28.10 16 20 Si 0.90 24.06 29.56 -169.99 -5.02 19.04 16 21 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 22 H -0.29 -7.97 7.11 56.52 0.40 -7.57 16 23 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 24 C 0.10 2.16 8.51 -2.97 -0.03 2.13 16 25 C 0.11 1.25 7.07 -3.13 -0.02 1.23 16 26 C -0.14 -1.09 9.88 -26.73 -0.26 -1.35 16 27 C -0.17 -1.02 9.92 -26.73 -0.27 -1.29 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.56 7.59 -51.93 -0.39 0.17 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.40 2.66 8.43 -40.82 -0.34 2.32 16 34 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 2.35 6.52 -51.93 -0.34 2.01 16 39 H 0.24 7.56 8.31 -40.82 -0.34 7.23 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.59 7.80 -51.93 -0.41 0.18 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -37.76 380.95 -9.24 -47.00 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -7.76 Total: -2.49 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: -1.81 Total: 11.76 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.56 Total: -61.99 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: 0.16 Total: -19.05 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.02 Total: 19.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.76 -9.24 -47.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108572444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.241 kcal (2) G-P(sol) polarization free energy of solvation -37.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds