Wall clock time and date at job start Fri Apr 10 2020 18:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86796 * 119.99912 * 2 1 4 4 H 1.48502 * 109.47009 * 240.00221 * 3 2 1 5 5 H 1.48501 * 109.47202 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47476 * 120.00058 * 3 2 1 7 7 C 1.38950 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99241 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99799 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99904 * 0.02562 * 10 9 7 12 12 C 1.50691 * 120.00169 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47437 * 180.02562 * 12 10 9 14 14 C 1.46898 * 111.00141 * 180.02562 * 13 12 10 15 15 H 1.08997 * 109.32359 * 35.35457 * 14 13 12 16 16 C 1.53034 * 109.32659 * 155.00054 * 14 13 12 17 17 C 1.53969 * 108.83161 * 175.49872 * 16 14 13 18 18 H 1.09002 * 112.99358 * 169.00951 * 17 16 14 19 19 C 1.55431 * 106.41436 * 293.82755 * 17 16 14 20 20 C 1.55167 * 100.35675 * 73.37270 * 19 17 16 21 21 H 1.08997 * 112.48521 * 163.35125 * 20 19 17 22 22 C 1.52994 * 109.18265 * 275.80097 * 14 13 12 23 23 N 1.47789 * 104.87521 * 40.82329 * 20 19 17 24 24 C 1.34775 * 125.85780 * 153.29055 * 23 20 19 25 25 O 1.21286 * 119.99723 * 0.02562 * 24 23 20 26 26 C 1.50699 * 120.00678 * 180.02562 * 24 23 20 27 27 C 1.52999 * 117.50133 * 248.62252 * 26 24 23 28 28 C 1.52994 * 60.00016 * 252.50707 * 27 26 24 29 29 C 1.51004 * 107.66167 * 333.48015 * 23 20 19 30 30 H 0.97002 * 119.99985 * 359.97438 * 1 2 3 31 31 H 0.96993 * 119.99930 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47067 * 59.99828 * 12 10 9 33 33 H 1.09005 * 109.47333 * 300.00754 * 12 10 9 34 34 H 1.00902 * 110.99885 * 303.95218 * 13 12 10 35 35 H 1.08994 * 109.57387 * 55.69295 * 16 14 13 36 36 H 1.08998 * 109.68238 * 295.36733 * 16 14 13 37 37 H 1.08998 * 111.23553 * 192.01790 * 19 17 16 38 38 H 1.09001 * 111.23305 * 316.46105 * 19 17 16 39 39 H 1.08998 * 109.52669 * 304.62156 * 22 14 13 40 40 H 1.08997 * 109.52810 * 64.77167 * 22 14 13 41 41 H 1.09007 * 115.54580 * 34.33050 * 26 24 23 42 42 H 1.09000 * 117.49632 * 0.02562 * 27 26 24 43 43 H 1.08997 * 117.49525 * 145.01298 * 27 26 24 44 44 H 1.08999 * 117.49908 * 252.50936 * 28 27 26 45 45 H 1.09004 * 117.51602 * 107.47870 * 28 27 26 46 46 H 1.09004 * 109.92959 * 242.29611 * 29 23 20 47 47 H 1.09001 * 110.91693 * 120.43117 * 29 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0000 13 7 2.1984 -5.9795 0.0007 14 6 1.4981 -7.2708 -0.0005 15 1 0.5894 -7.1877 -0.5966 16 6 2.4078 -8.3398 -0.6101 17 6 1.7089 -9.7074 -0.5026 18 1 2.2054 -10.4860 -1.0817 19 6 1.6180 -10.0363 1.0138 20 6 0.5021 -9.0490 1.4470 21 1 0.0724 -9.3045 2.4156 22 6 1.1285 -7.6435 1.4366 23 7 -0.4939 -9.0999 0.3564 24 6 -1.8110 -8.8410 0.4773 25 8 -2.2720 -8.5335 1.5562 26 6 -2.7110 -8.9335 -0.7279 27 6 -3.3044 -7.6308 -1.2681 28 6 -4.1964 -8.6277 -0.5255 29 6 0.2306 -9.4972 -0.9075 30 1 -0.4850 0.8401 0.0004 31 1 0.3534 -2.3906 -0.0002 32 1 0.6175 -4.9204 -0.8903 33 1 0.6167 -4.9208 0.8896 34 1 2.8339 -5.9124 -0.7802 35 1 3.3523 -8.3685 -0.0668 36 1 2.5963 -8.1072 -1.6581 37 1 1.3296 -11.0748 1.1760 38 1 2.5523 -9.8039 1.5248 39 1 2.0252 -7.6394 2.0562 40 1 0.4120 -6.9211 1.8276 41 1 -2.4502 -9.7062 -1.4512 42 1 -3.0435 -6.7069 -0.7521 43 1 -3.4339 -7.5462 -2.3471 44 1 -4.9128 -9.1988 -1.1159 45 1 -4.5227 -8.3599 0.4794 46 1 0.1566 -8.6980 -1.6451 47 1 -0.1785 -10.4210 -1.3166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108598450.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:02 Heat of formation + Delta-G solvation = -59.037267 kcal Electronic energy + Delta-G solvation = -27845.637184 eV Core-core repulsion = 24027.994116 eV Total energy + Delta-G solvation = -3817.643069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.00518 -40.28885 -39.86787 -37.05684 -36.68349 -35.86462 -33.61287 -33.27143 -32.13756 -30.59683 -27.81879 -26.98553 -25.80374 -25.50197 -23.36161 -22.50404 -22.40492 -21.17626 -20.34024 -19.90898 -19.84082 -18.61286 -17.85940 -17.21887 -16.85055 -16.52031 -16.35121 -16.29233 -15.96437 -15.61754 -15.23740 -15.06746 -14.68512 -14.42567 -14.18063 -14.11098 -13.58192 -13.56010 -13.45738 -13.40878 -13.10879 -12.89155 -12.88566 -12.80084 -12.48586 -12.46703 -12.26399 -12.13992 -11.77271 -11.54325 -11.53421 -11.46285 -11.22877 -11.11966 -10.88126 -10.38791 -10.06388 -9.69561 -9.37852 -8.49618 -5.99561 1.37839 1.39760 1.45733 1.51414 1.86505 1.98772 2.26551 2.82834 2.91017 3.16677 3.31296 3.40379 3.52552 3.70942 3.83589 3.89882 3.94674 4.04030 4.12449 4.15203 4.20017 4.24157 4.29834 4.36296 4.43756 4.52216 4.58457 4.63047 4.70704 4.74596 4.83567 4.88355 4.98612 5.01565 5.06136 5.16670 5.18717 5.21995 5.26366 5.32208 5.37033 5.38800 5.86965 6.07159 6.41990 6.49332 6.54745 7.07666 7.13339 7.50054 8.04536 8.67702 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014277 B = 0.003127 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.729071 B = 8953.182112 C =10305.652539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.996 3.004 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.618 6.618 12 C 0.071 3.929 13 N -0.675 5.675 14 C 0.094 3.906 15 H 0.042 0.958 16 C -0.115 4.115 17 C -0.084 4.084 18 H 0.142 0.858 19 C -0.116 4.116 20 C 0.129 3.871 21 H 0.079 0.921 22 C -0.114 4.114 23 N -0.614 5.614 24 C 0.546 3.454 25 O -0.597 6.597 26 C -0.189 4.189 27 C -0.151 4.151 28 C -0.149 4.149 29 C 0.099 3.901 30 H 0.278 0.722 31 H 0.394 0.606 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.349 0.651 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.025 0.975 41 H 0.155 0.845 42 H 0.073 0.927 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 -25.316 -6.550 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.099 0.901 9 N -0.210 5.210 10 C 0.226 3.774 11 O -0.505 6.505 12 C -0.062 4.062 13 N -0.308 5.308 14 C -0.015 4.015 15 H 0.059 0.941 16 C -0.153 4.153 17 C -0.103 4.103 18 H 0.160 0.840 19 C -0.154 4.154 20 C 0.025 3.975 21 H 0.097 0.903 22 C -0.154 4.154 23 N -0.347 5.347 24 C 0.336 3.664 25 O -0.478 6.478 26 C -0.209 4.209 27 C -0.189 4.189 28 C -0.187 4.187 29 C -0.021 4.021 30 H 0.088 0.912 31 H 0.228 0.772 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.168 0.832 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.172 0.828 42 H 0.092 0.908 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.400 -24.947 -5.319 25.733 hybrid contribution -0.666 1.471 -0.267 1.636 sum -4.066 -23.476 -5.586 24.472 Atomic orbital electron populations 1.69685 1.06994 1.29478 1.50073 1.26109 0.96550 1.02593 0.96039 0.84948 0.77742 0.76324 0.79083 1.19315 1.19426 1.19730 1.19676 0.92797 0.83924 1.50259 0.90064 1.41948 1.09248 1.04849 1.64909 1.20733 0.88257 0.85947 0.82454 1.90477 1.15494 1.87885 1.56638 1.21452 0.94088 0.88951 1.01704 1.60075 1.18801 1.00508 1.51458 1.21623 0.95889 0.88358 0.95669 0.94057 1.22022 0.98604 0.93290 1.01398 1.22669 0.93647 0.97335 0.96632 0.84016 1.23041 0.97675 0.98761 0.95932 1.22243 0.88669 0.95258 0.91311 0.90292 1.22043 0.99917 0.95943 0.97469 1.49625 1.05888 1.67202 1.11972 1.19969 0.81523 0.75466 0.89445 1.90681 1.75429 1.50796 1.30924 1.22251 0.95883 1.03918 0.98891 1.22982 1.02187 0.91644 1.02045 1.22999 0.91129 1.02405 1.02136 1.23197 0.92028 1.01613 0.85228 0.91224 0.77232 0.92253 0.90028 0.83151 0.90302 0.90239 0.88909 0.88716 0.90461 0.95577 0.82786 0.90812 0.84977 0.84961 0.90133 0.90402 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.21 13.05 21.66 0.28 -50.93 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.34 -19.70 9.68 84.04 0.81 -18.89 16 8 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.57 -30.81 5.29 -306.99 -1.62 -32.43 16 10 C 0.44 21.93 7.82 87.65 0.69 22.61 16 11 O -0.62 -35.10 15.78 -3.08 -0.05 -35.15 16 12 C 0.07 2.68 5.96 85.55 0.51 3.19 16 13 N -0.68 -22.07 5.92 -495.54 -2.93 -25.00 16 14 C 0.09 2.26 2.12 44.93 0.10 2.35 16 15 H 0.04 1.04 5.62 -2.39 -0.01 1.02 16 16 C -0.12 -1.79 4.73 30.93 0.15 -1.65 16 17 C -0.08 -0.81 4.27 -9.05 -0.04 -0.84 16 18 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 19 C -0.12 -1.43 6.22 32.17 0.20 -1.23 16 20 C 0.13 2.73 3.94 45.78 0.18 2.91 16 21 H 0.08 1.95 8.01 -2.39 -0.02 1.93 16 22 C -0.11 -3.01 5.15 30.89 0.16 -2.85 16 23 N -0.61 -12.41 2.46 -773.96 -1.90 -14.31 16 24 C 0.55 13.97 7.66 87.66 0.67 14.64 16 25 O -0.60 -21.24 16.51 -3.05 -0.05 -21.29 16 26 C -0.19 -3.31 5.59 -11.54 -0.06 -3.37 16 27 C -0.15 -2.65 10.23 30.59 0.31 -2.34 16 28 C -0.15 -2.60 10.04 30.59 0.31 -2.29 16 29 C 0.10 1.14 5.37 86.07 0.46 1.60 16 30 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.39 20.45 7.90 -92.71 -0.73 19.72 16 32 H 0.06 2.02 8.05 -2.38 -0.02 2.00 16 33 H 0.08 3.14 7.45 -2.38 -0.02 3.12 16 34 H 0.35 11.37 8.05 -89.69 -0.72 10.65 16 35 H 0.08 1.31 7.97 -2.39 -0.02 1.29 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 1.13 7.68 -2.39 -0.02 1.11 16 39 H 0.08 2.05 7.98 -2.39 -0.02 2.03 16 40 H 0.03 0.86 7.51 -2.39 -0.02 0.84 16 41 H 0.15 1.60 7.82 -2.38 -0.02 1.58 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.08 1.86 7.67 -2.39 -0.02 1.84 16 46 H 0.08 0.93 6.77 -2.38 -0.02 0.91 16 47 H 0.10 0.62 8.11 -2.39 -0.02 0.60 16 Total: -1.00 -77.94 375.05 0.20 -77.74 By element: Atomic # 1 Polarization: 42.53 SS G_CDS: -0.46 Total: 42.07 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 4.91 Total: 13.60 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -6.18 Total: -122.68 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -0.10 Total: -56.44 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -77.94 0.20 -77.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108598450.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.701 kcal (2) G-P(sol) polarization free energy of solvation -77.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds