Wall clock time and date at job start Fri Apr 10 2020 18:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 115.54850 * 2 1 4 4 O 1.21280 * 120.00004 * 214.32847 * 3 2 1 5 5 N 1.34777 * 119.99973 * 34.32312 * 3 2 1 6 6 C 1.46500 * 119.99993 * 180.02562 * 5 3 2 7 7 H 1.08998 * 110.67016 * 36.97083 * 6 5 3 8 8 C 1.54831 * 110.61678 * 159.92540 * 6 5 3 9 9 C 1.55849 * 103.51707 * 118.50478 * 8 6 5 10 10 H 1.09004 * 116.14518 * 159.23083 * 9 8 6 11 11 C 1.57330 * 105.76775 * 288.80213 * 9 8 6 12 12 C 1.54836 * 103.38331 * 71.10626 * 11 9 8 13 13 C 1.55843 * 103.52104 * 0.40401 * 12 11 9 14 14 H 1.08998 * 115.58663 * 158.88778 * 13 12 11 15 15 N 1.50651 * 101.02819 * 33.00037 * 9 8 6 16 16 C 1.46897 * 110.99903 * 189.75763 * 15 9 8 17 17 C 1.50701 * 109.47119 * 278.08911 * 16 15 9 18 18 O 1.21287 * 120.00111 * 359.97438 * 17 16 15 19 19 N 1.34782 * 119.99768 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99617 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99939 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99714 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00177 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99866 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47197 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47182 * 240.00453 * 24 22 20 27 27 H 1.48500 * 109.47307 * 119.99985 * 24 22 20 28 28 C 1.52999 * 117.51573 * 145.69833 * 2 1 3 29 29 C 1.53000 * 117.49909 * 214.33057 * 2 1 3 30 30 H 1.09009 * 109.46793 * 85.58578 * 1 2 3 31 31 H 1.09003 * 109.47197 * 205.58543 * 1 2 3 32 32 H 1.09001 * 109.47542 * 325.58581 * 1 2 3 33 33 H 0.96994 * 120.00016 * 0.02562 * 5 3 2 34 34 H 1.09006 * 110.60826 * 0.02562 * 8 6 5 35 35 H 1.08993 * 110.61397 * 237.01937 * 8 6 5 36 36 H 1.09002 * 110.33580 * 312.80897 * 11 9 8 37 37 H 1.08999 * 111.15401 * 189.80025 * 11 9 8 38 38 H 1.09003 * 110.61533 * 241.89428 * 12 11 9 39 39 H 1.09001 * 110.61157 * 118.90985 * 12 11 9 40 40 H 1.09000 * 109.47544 * 158.08985 * 16 15 9 41 41 H 1.09006 * 109.47382 * 38.08963 * 16 15 9 42 42 H 0.96994 * 120.00182 * 359.97438 * 19 17 16 43 43 H 0.97001 * 119.99800 * 359.97438 * 23 22 20 44 44 H 1.09000 * 117.49363 * 214.97102 * 28 2 1 45 45 H 1.08991 * 117.50003 * 359.97438 * 28 2 1 46 46 H 1.08997 * 117.49893 * 359.97438 * 29 2 1 47 47 H 1.08994 * 117.49959 * 144.97383 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3597 0.0000 4 8 3.2241 1.5327 -0.5923 5 7 1.6009 2.3834 0.6581 6 6 2.2324 3.7053 0.6577 7 1 2.6931 3.9113 -0.3085 8 6 1.2002 4.8027 1.0145 9 6 1.7679 5.4242 2.3261 10 1 1.4156 6.4252 2.5750 11 6 1.5571 4.3349 3.4415 12 6 2.5876 3.2398 3.0723 13 6 3.2860 3.8104 1.8013 14 1 4.2678 3.3936 1.5765 15 7 3.2498 5.2882 2.0915 16 6 4.0069 5.6041 3.3100 17 6 4.1571 7.0985 3.4349 18 8 3.6807 7.8284 2.5915 19 7 4.8216 7.6237 4.4833 20 6 4.9577 8.9832 4.5972 21 1 4.5321 9.6332 3.8470 22 6 5.6424 9.5247 5.6783 23 7 6.1598 8.7337 6.5913 24 14 5.8285 11.3768 5.8331 25 1 5.1612 12.0392 4.6835 26 1 7.2707 11.7306 5.8398 27 1 5.2009 11.8334 7.0992 28 6 2.2369 -1.1209 0.7647 29 6 2.2365 -1.1207 -0.7654 30 1 -0.3633 0.0791 -1.0247 31 1 -0.3634 -0.9269 0.4438 32 1 -0.3634 0.8478 0.5808 33 1 0.7660 2.2449 1.1321 34 1 0.2187 4.3631 1.1922 35 1 1.1491 5.5527 0.2252 36 1 0.5429 3.9381 3.3966 37 1 1.7659 4.7402 4.4316 38 1 2.0842 2.3003 2.8444 39 1 3.3089 3.1042 3.8782 40 1 4.9932 5.1433 3.2549 41 1 3.4739 5.2186 4.1792 42 1 5.2029 7.0399 5.1576 43 1 6.0634 7.7719 6.5107 44 1 3.1720 -0.8749 1.2677 45 1 1.6120 -1.8584 1.2683 46 1 1.6113 -1.8583 -1.2685 47 1 3.1711 -0.8746 -1.2692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109311420.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:24 Heat of formation + Delta-G solvation = -38.342114 kcal Electronic energy + Delta-G solvation = -27816.040709 eV Core-core repulsion = 23999.295050 eV Total energy + Delta-G solvation = -3816.745659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.36888 -40.87953 -39.87673 -37.63448 -36.39516 -35.68864 -33.23413 -32.33837 -31.25552 -30.26095 -29.26842 -27.88769 -25.98298 -24.58841 -23.39444 -23.03763 -22.06645 -20.98839 -20.56561 -20.39447 -19.93660 -18.23580 -17.98732 -17.52724 -17.20279 -16.59125 -16.57105 -16.08774 -15.76006 -15.59793 -15.46059 -15.06365 -14.69356 -14.50043 -14.06647 -13.84022 -13.57013 -13.44734 -13.36841 -13.24023 -13.17802 -12.93520 -12.76670 -12.69718 -12.42434 -12.37909 -12.03812 -11.97406 -11.88589 -11.86822 -11.51781 -11.50925 -11.25802 -10.97237 -10.79714 -10.47043 -10.10673 -10.07451 -9.52981 -8.93873 -6.07281 1.45584 1.51678 1.52410 1.80337 1.98093 2.01014 2.39059 2.71208 2.85134 3.13532 3.17230 3.43233 3.51439 3.65618 3.73541 3.80904 3.91110 3.99875 4.02410 4.07925 4.14028 4.20709 4.22520 4.26895 4.33874 4.47057 4.60725 4.71551 4.78396 4.81757 4.87135 4.89856 4.94049 4.95505 4.97755 5.05810 5.10740 5.16382 5.22595 5.30703 5.38889 5.57708 5.69378 5.85838 5.95983 6.51799 6.57493 6.75164 7.22543 7.43904 7.93581 8.54033 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.033222 B = 0.002486 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.616495 B =11261.741089 C =11436.119114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.173 4.173 3 C 0.543 3.457 4 O -0.585 6.585 5 N -0.696 5.696 6 C 0.160 3.840 7 H 0.071 0.929 8 C -0.102 4.102 9 C 0.045 3.955 10 H 0.091 0.909 11 C -0.147 4.147 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.097 0.903 15 N -0.497 5.497 16 C 0.040 3.960 17 C 0.449 3.551 18 O -0.610 6.610 19 N -0.590 5.590 20 C -0.406 4.406 21 H 0.071 0.929 22 C -0.044 4.044 23 N -0.919 5.919 24 Si 1.138 2.862 25 H -0.280 1.280 26 H -0.272 1.272 27 H -0.269 1.269 28 C -0.138 4.138 29 C -0.153 4.153 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.416 0.584 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.383 0.617 43 H 0.259 0.741 44 H 0.084 0.916 45 H 0.133 0.867 46 H 0.126 0.874 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.443 -22.951 -7.522 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.176 4.176 3 C 0.331 3.669 4 O -0.465 6.465 5 N -0.349 5.349 6 C 0.054 3.946 7 H 0.089 0.911 8 C -0.140 4.140 9 C -0.064 4.064 10 H 0.109 0.891 11 C -0.186 4.186 12 C -0.180 4.180 13 C -0.075 4.075 14 H 0.115 0.885 15 N -0.220 5.220 16 C -0.091 4.091 17 C 0.237 3.763 18 O -0.495 6.495 19 N -0.230 5.230 20 C -0.536 4.536 21 H 0.089 0.911 22 C -0.242 4.242 23 N -0.558 5.558 24 Si 0.958 3.042 25 H -0.206 1.206 26 H -0.197 1.197 27 H -0.194 1.194 28 C -0.175 4.175 29 C -0.190 4.190 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.255 0.745 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.217 0.783 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.151 0.849 46 H 0.144 0.856 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.141 -20.712 -8.018 26.329 hybrid contribution -0.334 -1.594 0.204 1.641 sum -14.474 -22.306 -7.814 27.715 Atomic orbital electron populations 1.21399 0.87963 1.04198 1.03169 1.21568 0.97476 0.87634 1.10907 1.20147 0.83708 0.86075 0.76968 1.90705 1.25420 1.84614 1.45772 1.45885 1.27183 1.08572 1.53276 1.21557 0.93126 0.82210 0.97743 0.91082 1.22774 0.98270 0.96585 0.96418 1.24719 0.87699 0.98154 0.95796 0.89130 1.23527 1.01228 0.95441 0.98376 1.23172 0.98359 0.99590 0.96853 1.24773 0.98860 0.87446 0.96446 0.88459 1.67297 1.07806 1.16214 1.30705 1.21936 1.00687 0.91785 0.94736 1.20737 0.82030 0.91216 0.82352 1.90484 1.52902 1.63149 1.42963 1.42008 1.50586 1.07312 1.23101 1.20545 1.37958 0.83338 1.11728 0.91078 1.27830 0.93154 1.12087 0.91089 1.70912 1.44333 1.05191 1.35385 0.82558 0.77526 0.67431 0.76694 1.20584 1.19749 1.19449 1.23191 1.01736 0.97966 0.94646 1.23072 1.02104 0.98695 0.95139 0.91533 0.89393 0.90841 0.74486 0.86973 0.90756 0.87785 0.92167 0.88613 0.91563 0.88764 0.89815 0.78331 0.93022 0.89760 0.84896 0.85636 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.79 71.98 0.70 -0.02 16 2 C -0.17 -2.30 2.61 -52.93 -0.14 -2.44 16 3 C 0.54 11.40 7.39 87.66 0.65 12.05 16 4 O -0.59 -18.28 15.99 -3.03 -0.05 -18.33 16 5 N -0.70 -11.58 3.56 -434.93 -1.55 -13.13 16 6 C 0.16 3.71 3.07 46.60 0.14 3.86 16 7 H 0.07 2.09 7.70 -2.39 -0.02 2.07 16 8 C -0.10 -2.17 6.22 32.20 0.20 -1.97 16 9 C 0.04 1.25 4.61 46.69 0.22 1.47 16 10 H 0.09 3.11 7.96 -2.38 -0.02 3.09 16 11 C -0.15 -3.02 5.69 32.75 0.19 -2.83 16 12 C -0.14 -2.81 5.54 32.20 0.18 -2.63 16 13 C 0.03 0.91 4.76 46.15 0.22 1.13 16 14 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 15 N -0.50 -16.80 5.09 -805.83 -4.10 -20.90 16 16 C 0.04 1.48 4.80 85.56 0.41 1.89 16 17 C 0.45 22.29 7.72 87.66 0.68 22.96 16 18 O -0.61 -35.29 15.58 -3.05 -0.05 -35.33 16 19 N -0.59 -31.08 5.28 -306.97 -1.62 -32.70 16 20 C -0.41 -23.86 9.68 84.04 0.81 -23.05 16 21 H 0.07 4.51 7.16 -2.91 -0.02 4.49 16 22 C -0.04 -2.43 5.50 84.93 0.47 -1.96 16 23 N -0.92 -52.21 13.68 21.66 0.30 -51.92 16 24 Si 1.14 49.75 29.92 68.60 2.05 51.80 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 C -0.14 -1.54 9.88 30.60 0.30 -1.24 16 29 C -0.15 -2.07 9.76 30.60 0.30 -1.77 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.09 0.27 7.90 -2.39 -0.02 0.25 16 32 H 0.07 0.31 6.38 -2.39 -0.02 0.29 16 33 H 0.42 4.05 6.35 -92.71 -0.59 3.46 16 34 H 0.11 1.48 7.41 -2.38 -0.02 1.46 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 1.43 7.89 -2.39 -0.02 1.41 16 37 H 0.06 1.40 6.91 -2.39 -0.02 1.38 16 38 H 0.10 1.46 6.56 -2.39 -0.02 1.45 16 39 H 0.07 1.37 7.62 -2.39 -0.02 1.35 16 40 H 0.09 3.23 8.09 -2.39 -0.02 3.22 16 41 H 0.08 2.67 5.02 -2.38 -0.01 2.65 16 42 H 0.38 18.55 6.73 -92.71 -0.62 17.93 16 43 H 0.26 14.27 6.78 -92.71 -0.63 13.64 16 44 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.13 0.73 8.05 -2.39 -0.02 0.71 16 46 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.08 1.55 7.67 -2.39 -0.02 1.54 16 Total: -1.00 -79.91 370.33 0.24 -79.67 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.06 Total: 35.40 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 5.33 Total: 5.43 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -6.98 Total: -118.64 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -0.10 Total: -53.66 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal Total: -79.91 0.24 -79.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109311420.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.329 kcal (2) G-P(sol) polarization free energy of solvation -79.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds