Wall clock time and date at job start Fri Apr 10 2020 18:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48507 * 109.46702 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47446 * 299.99959 * 3 2 1 6 6 H 1.48499 * 109.47317 * 60.00301 * 3 2 1 7 7 C 1.38950 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99494 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99799 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99664 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47067 * 185.59473 * 12 10 9 14 14 C 1.46905 * 110.99858 * 295.25237 * 13 12 10 15 15 C 1.53241 * 109.33803 * 187.25430 * 14 13 12 16 16 N 1.47074 * 108.52247 * 306.17191 * 15 14 13 17 17 C 1.34777 * 120.88071 * 230.91343 * 16 15 14 18 18 O 1.21279 * 120.00214 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99835 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46785 * 179.97438 * 19 17 16 21 21 H 1.08994 * 110.34919 * 307.28652 * 20 19 17 22 22 C 1.51099 * 110.38590 * 69.69577 * 20 19 17 23 23 C 1.30530 * 111.10689 * 135.24903 * 22 20 19 24 24 C 1.51111 * 111.10172 * 359.97438 * 23 22 20 25 25 C 1.54635 * 104.72488 * 343.56723 * 24 23 22 26 26 C 1.47083 * 118.23832 * 51.18763 * 16 15 14 27 27 C 1.46894 * 111.00314 * 59.55405 * 13 12 10 28 28 H 0.97005 * 120.00534 * 0.02562 * 1 2 3 29 29 H 0.96989 * 120.00031 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47133 * 65.59231 * 12 10 9 31 31 H 1.08997 * 109.46680 * 305.59106 * 12 10 9 32 32 H 1.08993 * 109.49021 * 67.29766 * 14 13 12 33 33 H 1.09001 * 109.49165 * 307.21557 * 14 13 12 34 34 H 1.08994 * 109.62789 * 186.46032 * 15 14 13 35 35 H 1.08999 * 109.78952 * 65.97782 * 15 14 13 36 36 H 1.08996 * 109.47175 * 299.99322 * 19 17 16 37 37 H 1.09001 * 109.47407 * 59.99840 * 19 17 16 38 38 H 1.08001 * 124.45284 * 315.24563 * 22 20 19 39 39 H 1.07995 * 124.45320 * 180.02562 * 23 22 20 40 40 H 1.09000 * 110.38905 * 224.75511 * 24 23 22 41 41 H 1.08996 * 110.47913 * 102.42489 * 24 23 22 42 42 H 1.08991 * 111.04001 * 266.59956 * 25 24 23 43 43 H 1.08998 * 111.03434 * 142.65869 * 25 24 23 44 44 H 1.08993 * 109.62944 * 68.52251 * 26 16 15 45 45 H 1.09007 * 109.62602 * 189.10940 * 26 16 15 46 46 H 1.08996 * 109.49648 * 292.70905 * 27 13 12 47 47 H 1.09002 * 109.49213 * 52.78819 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8630 -0.0011 13 7 2.1928 -5.9762 0.1340 14 6 3.0819 -6.0546 -1.0328 15 6 3.9296 -7.3279 -0.9401 16 7 4.6110 -7.3417 0.3631 17 6 5.9404 -7.5473 0.4465 18 8 6.5910 -7.7247 -0.5616 19 6 6.6183 -7.5581 1.7924 20 6 8.1159 -7.8106 1.6071 21 1 8.2779 -8.7054 1.0063 22 6 8.7755 -6.6140 0.9620 23 6 9.8956 -6.3147 1.5616 24 6 10.1694 -7.2614 2.7071 25 6 8.8121 -7.9499 2.9810 26 6 3.8023 -7.1312 1.5735 27 6 2.9598 -5.8657 1.3819 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6948 -4.9651 -0.9372 31 1 0.5440 -4.8787 0.8343 32 1 3.7358 -5.1828 -1.0509 33 1 2.4845 -6.0808 -1.9441 34 1 4.6695 -7.3341 -1.7403 35 1 3.2886 -8.2051 -1.0275 36 1 6.4696 -6.5955 2.2818 37 1 6.1903 -8.3489 2.4085 38 1 8.3732 -6.0769 0.1158 39 1 10.5415 -5.4972 1.2771 40 1 10.4989 -6.7082 3.5866 41 1 10.9187 -7.9995 2.4210 42 1 8.2561 -7.4238 3.7569 43 1 8.9514 -8.9984 3.2442 44 1 3.1465 -7.9877 1.7292 45 1 4.4584 -7.0073 2.4352 46 1 3.6154 -4.9965 1.3302 47 1 2.2739 -5.7548 2.2218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112605704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:07 Heat of formation + Delta-G solvation = -43.681271 kcal Electronic energy + Delta-G solvation = -27600.649586 eV Core-core repulsion = 23783.672403 eV Total energy + Delta-G solvation = -3816.977183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.35235 -39.19925 -38.28662 -36.88484 -34.48621 -33.65799 -32.01059 -31.37439 -30.68198 -29.04066 -28.74581 -26.10327 -25.16859 -23.79887 -23.33363 -21.18126 -20.54960 -19.49584 -18.96745 -18.51020 -17.89274 -17.04832 -16.17428 -16.08406 -15.88745 -15.30750 -15.10767 -14.91471 -14.70461 -14.53245 -14.04908 -13.93220 -13.71082 -13.42068 -13.25042 -12.54439 -12.37943 -12.07850 -11.95743 -11.90104 -11.82126 -11.56249 -11.49916 -11.38539 -11.27522 -11.19493 -11.03318 -10.85467 -10.81717 -10.68032 -10.41419 -10.31597 -9.61080 -9.54877 -9.31461 -8.94524 -8.56837 -8.06037 -7.49648 -6.51176 -3.92622 2.27190 2.74232 3.07512 3.08995 3.21141 3.28006 3.75851 4.10054 4.23527 4.37568 4.49238 4.67134 4.78298 4.91461 5.06562 5.10285 5.13010 5.21702 5.26573 5.32998 5.37053 5.43013 5.48355 5.50612 5.63273 5.65636 5.67292 5.75390 5.80489 5.82933 5.92464 5.96982 6.02963 6.06564 6.15159 6.16774 6.46025 6.53889 6.60073 6.65927 6.87058 7.18163 7.31838 7.46042 7.54251 7.95307 8.28364 8.49471 9.07403 9.42961 9.93241 10.65326 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.003053 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.308214 B = 9167.725656 C =10585.536642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.555 5.555 10 C 0.404 3.596 11 O -0.594 6.594 12 C 0.042 3.958 13 N -0.513 5.513 14 C 0.024 3.976 15 C 0.121 3.879 16 N -0.609 5.609 17 C 0.516 3.484 18 O -0.546 6.546 19 C -0.132 4.132 20 C -0.053 4.053 21 H 0.089 0.911 22 C -0.138 4.138 23 C -0.185 4.185 24 C -0.098 4.098 25 C -0.123 4.123 26 C 0.115 3.885 27 C 0.022 3.978 28 H 0.272 0.728 29 H 0.393 0.607 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.586 -15.999 6.018 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.190 5.190 10 C 0.190 3.810 11 O -0.481 6.481 12 C -0.090 4.090 13 N -0.236 5.236 14 C -0.104 4.104 15 C -0.002 4.002 16 N -0.342 5.342 17 C 0.305 3.695 18 O -0.424 6.424 19 C -0.172 4.172 20 C -0.071 4.071 21 H 0.107 0.893 22 C -0.156 4.156 23 C -0.203 4.203 24 C -0.135 4.135 25 C -0.160 4.160 26 C -0.008 4.008 27 C -0.107 4.107 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.323 -16.377 5.509 19.633 hybrid contribution -0.087 1.846 -0.080 1.850 sum 9.236 -14.531 5.429 18.053 Atomic orbital electron populations 1.69615 1.05977 1.28267 1.49967 1.25292 0.95626 0.99853 0.97008 0.85811 0.79723 0.81073 0.77826 1.19229 1.20634 1.20639 1.19757 0.93398 0.82361 1.47695 0.87940 1.42061 1.09320 1.04948 1.62687 1.21083 0.88837 0.85976 0.85132 1.90427 1.13894 1.86874 1.56909 1.22055 0.95348 0.88136 1.03473 1.62448 1.18173 1.40421 1.02555 1.22680 0.96073 0.98456 0.93193 1.21667 0.95372 0.97840 0.85312 1.48148 1.07040 1.70927 1.08114 1.20637 0.81442 0.75879 0.91588 1.90665 1.63758 1.49999 1.37933 1.21746 0.95843 1.04176 0.95429 1.20828 0.92313 0.98286 0.95710 0.89296 1.23323 0.96312 0.96713 0.99264 1.23230 0.98512 0.99963 0.98597 1.21318 0.97507 0.97376 0.97283 1.22569 0.96009 1.00791 0.96643 1.21856 0.93843 0.98369 0.86728 1.22679 0.97467 0.98036 0.92508 0.91761 0.77365 0.89182 0.89258 0.90099 0.90649 0.89216 0.91592 0.88623 0.88930 0.85716 0.86099 0.91419 0.91033 0.90841 0.90939 0.91107 0.89845 0.90116 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.90 13.05 55.50 0.72 -23.17 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.56 -13.51 5.29 -10.96 -0.06 -13.57 16 10 C 0.40 8.92 7.18 -10.98 -0.08 8.84 16 11 O -0.59 -14.84 11.25 5.55 0.06 -14.78 16 12 C 0.04 0.70 5.84 -4.98 -0.03 0.67 16 13 N -0.51 -7.99 4.83 -235.77 -1.14 -9.13 16 14 C 0.02 0.39 5.21 -3.70 -0.02 0.38 16 15 C 0.12 1.73 6.60 -3.60 -0.02 1.71 16 16 N -0.61 -8.47 3.01 -172.46 -0.52 -8.99 16 17 C 0.52 7.40 7.51 -10.98 -0.08 7.32 16 18 O -0.55 -9.51 14.37 5.56 0.08 -9.43 16 19 C -0.13 -1.42 3.46 -27.88 -0.10 -1.51 16 20 C -0.05 -0.58 2.52 -90.71 -0.23 -0.81 16 21 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 22 C -0.14 -1.75 9.26 -35.70 -0.33 -2.08 16 23 C -0.19 -2.03 10.78 -35.69 -0.38 -2.41 16 24 C -0.10 -0.87 6.81 -26.82 -0.18 -1.05 16 25 C -0.12 -1.04 6.71 -25.00 -0.17 -1.21 16 26 C 0.12 1.37 6.50 -3.60 -0.02 1.34 16 27 C 0.02 0.32 5.12 -3.70 -0.02 0.31 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.39 9.19 7.90 -40.82 -0.32 8.86 16 30 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.65 5.74 -51.93 -0.30 1.35 16 33 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16 34 H 0.09 1.37 7.06 -51.93 -0.37 1.00 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.02 7.65 -51.93 -0.40 0.62 16 37 H 0.09 0.76 7.99 -51.93 -0.42 0.34 16 38 H 0.12 1.84 7.58 -52.49 -0.40 1.44 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.58 7.91 -51.93 -0.41 0.16 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.80 6.02 -51.93 -0.31 0.49 16 46 H 0.08 1.54 5.73 -51.93 -0.30 1.24 16 47 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 LS Contribution 369.45 15.07 5.57 5.57 Total: -1.00 -31.36 369.45 -9.57 -40.93 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -7.36 Total: 13.20 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.91 Total: 3.69 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.99 Total: -54.87 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.14 Total: -24.20 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.36 -9.57 -40.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112605704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.755 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds