Wall clock time and date at job start Fri Apr 10 2020 18:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48507 * 109.46702 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47446 * 299.99959 * 3 2 1 6 6 H 1.48499 * 109.47317 * 60.00301 * 3 2 1 7 7 C 1.38950 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99494 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99799 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99664 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47067 * 185.59473 * 12 10 9 14 14 C 1.46905 * 110.99858 * 295.25237 * 13 12 10 15 15 C 1.53241 * 109.33803 * 187.25430 * 14 13 12 16 16 N 1.47074 * 108.52247 * 306.17191 * 15 14 13 17 17 C 1.34777 * 120.88071 * 230.91343 * 16 15 14 18 18 O 1.21279 * 120.00214 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99835 * 180.02562 * 17 16 15 20 20 C 1.53001 * 109.46785 * 179.97438 * 19 17 16 21 21 H 1.08994 * 110.34919 * 307.28652 * 20 19 17 22 22 C 1.51099 * 110.38590 * 69.69577 * 20 19 17 23 23 C 1.30530 * 111.10689 * 135.24903 * 22 20 19 24 24 C 1.51111 * 111.10172 * 359.97438 * 23 22 20 25 25 C 1.54635 * 104.72488 * 343.56723 * 24 23 22 26 26 C 1.47083 * 118.23832 * 51.18763 * 16 15 14 27 27 C 1.46894 * 111.00314 * 59.55405 * 13 12 10 28 28 H 0.97005 * 120.00534 * 0.02562 * 1 2 3 29 29 H 0.96989 * 120.00031 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47133 * 65.59231 * 12 10 9 31 31 H 1.08997 * 109.46680 * 305.59106 * 12 10 9 32 32 H 1.08993 * 109.49021 * 67.29766 * 14 13 12 33 33 H 1.09001 * 109.49165 * 307.21557 * 14 13 12 34 34 H 1.08994 * 109.62789 * 186.46032 * 15 14 13 35 35 H 1.08999 * 109.78952 * 65.97782 * 15 14 13 36 36 H 1.08996 * 109.47175 * 299.99322 * 19 17 16 37 37 H 1.09001 * 109.47407 * 59.99840 * 19 17 16 38 38 H 1.08001 * 124.45284 * 315.24563 * 22 20 19 39 39 H 1.07995 * 124.45320 * 180.02562 * 23 22 20 40 40 H 1.09000 * 110.38905 * 224.75511 * 24 23 22 41 41 H 1.08996 * 110.47913 * 102.42489 * 24 23 22 42 42 H 1.08991 * 111.04001 * 266.59956 * 25 24 23 43 43 H 1.08998 * 111.03434 * 142.65869 * 25 24 23 44 44 H 1.08993 * 109.62944 * 68.52251 * 26 16 15 45 45 H 1.09007 * 109.62602 * 189.10940 * 26 16 15 46 46 H 1.08996 * 109.49648 * 292.70905 * 27 13 12 47 47 H 1.09002 * 109.49213 * 52.78819 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2439 -4.8630 -0.0011 13 7 2.1928 -5.9762 0.1340 14 6 3.0819 -6.0546 -1.0328 15 6 3.9296 -7.3279 -0.9401 16 7 4.6110 -7.3417 0.3631 17 6 5.9404 -7.5473 0.4465 18 8 6.5910 -7.7247 -0.5616 19 6 6.6183 -7.5581 1.7924 20 6 8.1159 -7.8106 1.6071 21 1 8.2779 -8.7054 1.0063 22 6 8.7755 -6.6140 0.9620 23 6 9.8956 -6.3147 1.5616 24 6 10.1694 -7.2614 2.7071 25 6 8.8121 -7.9499 2.9810 26 6 3.8023 -7.1312 1.5735 27 6 2.9598 -5.8657 1.3819 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6948 -4.9651 -0.9372 31 1 0.5440 -4.8787 0.8343 32 1 3.7358 -5.1828 -1.0509 33 1 2.4845 -6.0808 -1.9441 34 1 4.6695 -7.3341 -1.7403 35 1 3.2886 -8.2051 -1.0275 36 1 6.4696 -6.5955 2.2818 37 1 6.1903 -8.3489 2.4085 38 1 8.3732 -6.0769 0.1158 39 1 10.5415 -5.4972 1.2771 40 1 10.4989 -6.7082 3.5866 41 1 10.9187 -7.9995 2.4210 42 1 8.2561 -7.4238 3.7569 43 1 8.9514 -8.9984 3.2442 44 1 3.1465 -7.9877 1.7292 45 1 4.4584 -7.0073 2.4352 46 1 3.6154 -4.9965 1.3302 47 1 2.2739 -5.7548 2.2218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112605704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:06 Heat of formation + Delta-G solvation = -65.318372 kcal Electronic energy + Delta-G solvation = -27601.587841 eV Core-core repulsion = 23783.672403 eV Total energy + Delta-G solvation = -3817.915438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51199 -40.60933 -39.36498 -38.26232 -36.14013 -35.22065 -33.35501 -32.98828 -31.76140 -30.12968 -29.78282 -27.52141 -26.44008 -25.24414 -24.50018 -22.36044 -21.39793 -21.12133 -20.23642 -19.78214 -19.42935 -18.16941 -17.78819 -17.20752 -16.85566 -16.64639 -16.36734 -16.19299 -16.10992 -15.83939 -15.61737 -15.39740 -15.19709 -14.56241 -14.52283 -13.69579 -13.56130 -13.54700 -13.13365 -13.02453 -12.92395 -12.78605 -12.72200 -12.68112 -12.46963 -12.25604 -12.17511 -12.13833 -12.06828 -12.03207 -11.92764 -11.71309 -11.41579 -11.00950 -10.73945 -10.02428 -9.81912 -9.74376 -9.03377 -8.49923 -5.99629 1.31272 1.35042 1.37667 1.50769 1.64142 1.98689 2.02798 2.25596 2.95414 3.16244 3.23720 3.47248 3.70796 3.81303 3.96250 4.01098 4.05312 4.19305 4.31642 4.34518 4.36297 4.42458 4.53958 4.56173 4.60559 4.61959 4.65993 4.68698 4.72357 4.75095 4.83501 4.96524 5.00601 5.09567 5.11552 5.27439 5.28131 5.38342 5.42913 5.48521 5.67288 5.80930 5.94302 5.98511 6.00900 6.45599 6.55551 7.08728 7.18424 7.52164 8.07636 8.65592 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.003053 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.308214 B = 9167.725656 C =10585.536642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.332 4.332 8 H 0.074 0.926 9 N -0.569 5.569 10 C 0.406 3.594 11 O -0.624 6.624 12 C 0.050 3.950 13 N -0.497 5.497 14 C 0.030 3.970 15 C 0.126 3.874 16 N -0.614 5.614 17 C 0.506 3.494 18 O -0.586 6.586 19 C -0.125 4.125 20 C -0.051 4.051 21 H 0.075 0.925 22 C -0.173 4.173 23 C -0.176 4.176 24 C -0.098 4.098 25 C -0.114 4.114 26 C 0.120 3.880 27 C 0.020 3.980 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.032 0.968 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.110 0.890 46 H 0.034 0.966 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.118 -17.628 8.198 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.202 1.202 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.462 4.462 8 H 0.092 0.908 9 N -0.206 5.206 10 C 0.194 3.806 11 O -0.512 6.512 12 C -0.082 4.082 13 N -0.219 5.219 14 C -0.099 4.099 15 C 0.003 3.997 16 N -0.347 5.347 17 C 0.297 3.703 18 O -0.467 6.467 19 C -0.164 4.164 20 C -0.069 4.069 21 H 0.093 0.907 22 C -0.192 4.192 23 C -0.193 4.193 24 C -0.135 4.135 25 C -0.151 4.151 26 C -0.003 4.003 27 C -0.109 4.109 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.128 0.872 31 H 0.135 0.865 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.107 0.893 39 H 0.142 0.858 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.128 0.872 46 H 0.053 0.947 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.828 -18.021 7.708 21.496 hybrid contribution 0.121 2.330 -0.807 2.468 sum 8.949 -15.691 6.901 19.337 Atomic orbital electron populations 1.69663 1.06708 1.29279 1.50117 1.25983 0.96495 1.02282 0.96267 0.84941 0.77881 0.77475 0.78463 1.20226 1.19636 1.19342 1.19621 0.92462 0.84282 1.49845 0.90819 1.42124 1.09401 1.04942 1.64109 1.22214 0.88736 0.87220 0.82478 1.90451 1.15820 1.87687 1.57284 1.22177 0.95358 0.84901 1.05716 1.62561 1.17819 1.38903 1.02625 1.22573 0.95711 0.97461 0.94144 1.21560 0.94978 0.97616 0.85584 1.48327 1.07325 1.70478 1.08582 1.21376 0.81405 0.74936 0.92612 1.90644 1.64576 1.51826 1.39637 1.21796 0.95577 1.05519 0.93498 1.20817 0.92569 0.96590 0.96971 0.90671 1.23278 0.97940 0.98432 0.99504 1.23547 0.97373 0.99821 0.98608 1.21395 0.98240 0.97188 0.96680 1.22584 0.95203 1.02279 0.95014 1.22026 0.94058 0.97589 0.86580 1.22722 0.97421 0.98034 0.92701 0.91222 0.76923 0.87156 0.86500 0.94975 0.89530 0.90955 0.89102 0.88364 0.85314 0.89324 0.85815 0.89824 0.89909 0.89647 0.88798 0.88240 0.87229 0.94722 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 7 C -0.33 -18.63 9.68 84.04 0.81 -17.82 16 8 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 9 N -0.57 -28.32 5.29 -306.98 -1.62 -29.94 16 10 C 0.41 18.28 7.18 87.66 0.63 18.91 16 11 O -0.62 -32.67 11.25 -3.07 -0.03 -32.70 16 12 C 0.05 1.60 5.84 85.56 0.50 2.10 16 13 N -0.50 -14.76 4.83 -899.84 -4.35 -19.10 16 14 C 0.03 0.98 5.21 86.38 0.45 1.43 16 15 C 0.13 3.57 6.60 86.35 0.57 4.14 16 16 N -0.61 -16.60 3.01 -817.94 -2.46 -19.07 16 17 C 0.51 14.55 7.51 87.66 0.66 15.20 16 18 O -0.59 -21.41 14.37 -3.03 -0.04 -21.45 16 19 C -0.12 -2.48 3.46 29.85 0.10 -2.38 16 20 C -0.05 -1.07 2.52 -10.85 -0.03 -1.10 16 21 H 0.08 1.77 7.90 -2.39 -0.02 1.75 16 22 C -0.17 -4.58 9.26 26.26 0.24 -4.34 16 23 C -0.18 -3.81 10.78 26.26 0.28 -3.52 16 24 C -0.10 -1.51 6.81 30.54 0.21 -1.31 16 25 C -0.11 -1.60 6.71 31.71 0.21 -1.38 16 26 C 0.12 2.52 6.50 86.35 0.56 3.08 16 27 C 0.02 0.57 5.12 86.39 0.44 1.01 16 28 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 29 H 0.40 18.74 7.90 -92.72 -0.73 18.01 16 30 H 0.11 3.14 8.07 -2.39 -0.02 3.13 16 31 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.03 1.38 5.74 -2.39 -0.01 1.37 16 33 H 0.09 2.56 8.06 -2.39 -0.02 2.54 16 34 H 0.07 2.31 7.06 -2.39 -0.02 2.29 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.10 1.94 7.65 -2.39 -0.02 1.93 16 37 H 0.13 1.62 7.99 -2.39 -0.02 1.60 16 38 H 0.09 2.93 7.58 -2.91 -0.02 2.91 16 39 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.02 7.91 -2.39 -0.02 1.00 16 43 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.11 1.74 6.02 -2.38 -0.01 1.73 16 46 H 0.03 1.34 5.73 -2.39 -0.01 1.33 16 47 H 0.10 2.37 8.11 -2.39 -0.02 2.35 16 Total: -1.00 -72.75 369.45 0.16 -72.59 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: 0.24 Total: 39.35 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 6.11 Total: 13.96 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -8.15 Total: -116.64 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: -0.08 Total: -54.16 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -72.75 0.16 -72.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112605704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.267 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds