Wall clock time and date at job start Fri Apr 10 2020 18:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 120.00603 * 2 1 4 4 H 1.48498 * 109.46804 * 90.00009 * 3 2 1 5 5 H 1.48495 * 109.47443 * 210.00545 * 3 2 1 6 6 H 1.48502 * 109.47014 * 330.00746 * 3 2 1 7 7 C 1.38951 * 119.99365 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00557 * 359.97438 * 7 2 1 9 9 N 1.37101 * 120.00010 * 179.97438 * 7 2 1 10 10 C 1.34773 * 120.00249 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99963 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99883 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47160 * 180.02562 * 12 10 9 14 14 C 1.46899 * 110.99491 * 294.30286 * 13 12 10 15 15 C 1.53247 * 109.34029 * 172.74380 * 14 13 12 16 16 N 1.47085 * 108.51503 * 53.82759 * 15 14 13 17 17 C 1.34779 * 120.87745 * 128.79709 * 16 15 14 18 18 O 1.21286 * 119.99666 * 174.82923 * 17 16 15 19 19 C 1.50696 * 120.00218 * 354.82955 * 17 16 15 20 20 H 1.09005 * 109.64012 * 324.55487 * 19 17 16 21 21 C 1.53027 * 109.64265 * 84.97185 * 19 17 16 22 22 C 1.50166 * 110.09331 * 168.90442 * 21 19 17 23 23 C 1.29441 * 124.14915 * 343.28517 * 22 21 19 24 24 C 1.50058 * 124.07513 * 0.23648 * 23 22 21 25 25 C 1.53022 * 110.14994 * 342.87443 * 24 23 22 26 26 C 1.47076 * 118.24059 * 308.81637 * 16 15 14 27 27 C 1.46889 * 111.00278 * 169.99901 * 13 12 10 28 28 H 0.97005 * 119.99222 * 359.97438 * 1 2 3 29 29 H 0.97007 * 119.99471 * 0.02562 * 9 7 2 30 30 H 1.08998 * 109.47378 * 300.00139 * 12 10 9 31 31 H 1.08995 * 109.47138 * 60.00239 * 12 10 9 32 32 H 1.08996 * 109.49733 * 292.70165 * 14 13 12 33 33 H 1.09001 * 109.50073 * 52.78932 * 14 13 12 34 34 H 1.08999 * 109.62677 * 294.12223 * 15 14 13 35 35 H 1.08997 * 109.63152 * 173.53870 * 15 14 13 36 36 H 1.08999 * 109.35965 * 289.33184 * 21 19 17 37 37 H 1.09004 * 109.35642 * 48.91483 * 21 19 17 38 38 H 1.08001 * 117.88455 * 163.03464 * 22 21 19 39 39 H 1.08001 * 117.95892 * 180.21851 * 23 22 21 40 40 H 1.09002 * 109.36070 * 222.65992 * 24 23 22 41 41 H 1.09003 * 109.24358 * 103.00882 * 24 23 22 42 42 H 1.09003 * 109.63919 * 289.74792 * 25 24 23 43 43 H 1.08997 * 109.81901 * 169.22339 * 25 24 23 44 44 H 1.09003 * 109.62708 * 291.47616 * 26 16 15 45 45 H 1.09000 * 109.63346 * 170.89887 * 26 16 15 46 46 H 1.09001 * 109.49513 * 307.21735 * 27 13 12 47 47 H 1.09002 * 109.49378 * 67.29319 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0462 1.4001 5 1 3.5457 1.4400 -0.7001 6 1 1.4457 2.6527 -0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3798 -1.2036 -0.0011 10 6 4.0535 -2.3708 -0.0011 11 8 3.4470 -3.4212 -0.0011 12 6 5.5606 -2.3709 -0.0011 13 7 6.0502 -3.7559 -0.0017 14 6 5.6934 -4.4408 1.2479 15 6 6.0590 -5.9248 1.1356 16 7 7.4749 -6.0292 0.7513 17 6 8.3250 -6.8091 1.4481 18 8 9.4656 -6.9577 1.0633 19 6 7.8585 -7.4966 2.7054 20 1 7.1561 -6.8533 3.2356 21 6 7.1753 -8.8179 2.3460 22 6 6.9490 -9.6354 3.5851 23 6 7.5463 -9.4245 4.7139 24 6 8.5459 -8.3294 4.9444 25 6 9.0631 -7.7974 3.6060 26 6 7.9386 -5.2597 -0.4132 27 6 7.4989 -3.8021 -0.2399 28 1 -0.4849 0.8402 0.0004 29 1 3.8648 -0.3635 -0.0007 30 1 5.9240 -1.8571 -0.8910 31 1 5.9239 -1.8571 0.8889 32 1 6.2410 -3.9932 2.0773 33 1 4.6222 -4.3426 1.4237 34 1 5.4375 -6.3984 0.3757 35 1 5.9034 -6.4141 2.0970 36 1 6.2190 -8.6112 1.8654 37 1 7.8096 -9.3772 1.6581 38 1 6.2399 -10.4483 3.5314 39 1 7.3104 -10.0773 5.5413 40 1 9.3817 -8.7193 5.5255 41 1 8.0698 -7.5186 5.4957 42 1 9.6957 -8.5486 3.1330 43 1 9.6365 -6.8847 3.7679 44 1 7.4977 -5.6695 -1.3220 45 1 9.0256 -5.3094 -0.4757 46 1 7.7371 -3.2404 -1.1431 47 1 8.0214 -3.3633 0.6102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112607405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:13 Heat of formation + Delta-G solvation = -64.958453 kcal Electronic energy + Delta-G solvation = -27494.130478 eV Core-core repulsion = 23676.230647 eV Total energy + Delta-G solvation = -3817.899830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66810 -40.50492 -39.13894 -38.26838 -36.08757 -35.45493 -33.72361 -32.84439 -31.83848 -31.58115 -30.18854 -27.47601 -25.65916 -24.95332 -24.50325 -23.67639 -21.93049 -21.25640 -20.25087 -19.89877 -18.98592 -18.17749 -17.78479 -17.30914 -16.83866 -16.63261 -16.40016 -16.09280 -15.93168 -15.56699 -15.41544 -15.11776 -14.97763 -14.66359 -14.36310 -14.32651 -14.28226 -13.91427 -13.74510 -13.31626 -13.27879 -13.17812 -12.97362 -12.80016 -12.41529 -12.39150 -12.27620 -12.18537 -11.97064 -11.93002 -11.69779 -11.43559 -11.35863 -10.66370 -10.40111 -10.21198 -9.88960 -9.79315 -9.22409 -8.39127 -5.99236 1.31680 1.36386 1.39912 1.45382 1.53162 1.89153 1.98536 2.24410 2.59082 3.17329 3.19246 3.35240 3.70750 3.75141 3.84600 3.95667 4.07002 4.09484 4.20037 4.24647 4.28697 4.32414 4.38290 4.42364 4.46955 4.51783 4.59518 4.61453 4.67951 4.72781 4.81758 4.89993 4.90614 5.00053 5.03411 5.05338 5.22690 5.30100 5.42619 5.54711 5.75893 5.84939 5.99830 6.05119 6.11363 6.35084 6.62077 6.91307 7.07209 7.42934 7.99491 8.78383 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020893 B = 0.002605 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.862544 B =10747.103214 C =11395.903617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.962 3.038 4 H -0.258 1.258 5 H -0.231 1.231 6 H -0.278 1.278 7 C -0.323 4.323 8 H 0.058 0.942 9 N -0.593 5.593 10 C 0.453 3.547 11 O -0.601 6.601 12 C 0.055 3.945 13 N -0.535 5.535 14 C 0.040 3.960 15 C 0.120 3.880 16 N -0.610 5.610 17 C 0.520 3.480 18 O -0.580 6.580 19 C -0.106 4.106 20 H 0.107 0.893 21 C -0.078 4.078 22 C -0.163 4.163 23 C -0.156 4.156 24 C -0.091 4.091 25 C -0.097 4.097 26 C 0.116 3.884 27 C 0.048 3.952 28 H 0.278 0.722 29 H 0.388 0.612 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.325 -10.868 7.657 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.214 4.214 3 Si 0.782 3.218 4 H -0.183 1.183 5 H -0.154 1.154 6 H -0.203 1.203 7 C -0.453 4.453 8 H 0.076 0.924 9 N -0.235 5.235 10 C 0.241 3.759 11 O -0.485 6.485 12 C -0.076 4.076 13 N -0.260 5.260 14 C -0.089 4.089 15 C -0.002 4.002 16 N -0.343 5.343 17 C 0.310 3.690 18 O -0.460 6.460 19 C -0.127 4.127 20 H 0.125 0.875 21 C -0.115 4.115 22 C -0.181 4.181 23 C -0.174 4.174 24 C -0.127 4.127 25 C -0.135 4.135 26 C -0.006 4.006 27 C -0.080 4.080 28 H 0.087 0.913 29 H 0.224 0.776 30 H 0.140 0.860 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.126 0.874 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 20.097 -11.801 7.059 24.351 hybrid contribution -0.121 1.414 0.354 1.463 sum 19.976 -10.386 7.413 23.704 Atomic orbital electron populations 1.69806 1.08115 1.29125 1.50588 1.26078 0.96419 1.02628 0.96284 0.85400 0.79548 0.76977 0.79827 1.18288 1.15412 1.20306 1.18992 0.81429 0.94889 1.49957 0.92392 1.42057 1.05823 1.07620 1.68017 1.20803 0.90629 0.83354 0.81113 1.90511 1.71142 1.32358 1.54472 1.21818 0.90523 0.90805 1.04453 1.61446 1.13855 1.14482 1.36199 1.22546 1.02135 0.94374 0.89800 1.21902 0.80035 0.95950 1.02328 1.48341 1.10218 1.45474 1.30230 1.21065 0.84543 0.78125 0.85278 1.90649 1.20662 1.63729 1.70957 1.21455 1.00114 0.97884 0.93202 0.87529 1.20385 1.00754 0.93058 0.97326 1.22061 1.01161 1.00683 0.94217 1.22266 0.97828 0.99174 0.98123 1.20514 0.98377 0.97417 0.96427 1.21394 0.95558 1.01383 0.95138 1.21715 1.00512 0.90261 0.88150 1.22533 0.86115 0.96714 1.02595 0.91254 0.77620 0.86016 0.90535 0.94211 0.90043 0.90912 0.87220 0.89749 0.91341 0.86401 0.86272 0.89408 0.89794 0.92172 0.91797 0.90822 0.88843 0.87356 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.57 13.96 21.66 0.30 -55.27 16 2 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 3 Si 0.96 37.91 27.74 68.60 1.90 39.81 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.23 -7.59 6.52 99.48 0.65 -6.95 16 6 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.32 -18.37 10.16 84.04 0.85 -17.51 16 8 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 9 N -0.59 -26.80 5.09 -306.98 -1.56 -28.36 16 10 C 0.45 19.26 7.44 87.66 0.65 19.91 16 11 O -0.60 -31.03 13.91 -3.07 -0.04 -31.07 16 12 C 0.05 1.57 5.45 85.56 0.47 2.04 16 13 N -0.53 -14.85 4.37 -899.83 -3.93 -18.78 16 14 C 0.04 1.10 5.26 86.39 0.45 1.56 16 15 C 0.12 2.75 6.11 86.35 0.53 3.28 16 16 N -0.61 -14.09 3.01 -817.92 -2.46 -16.55 16 17 C 0.52 12.55 6.80 87.66 0.60 13.15 16 18 O -0.58 -17.74 15.72 -3.05 -0.05 -17.79 16 19 C -0.11 -1.94 1.69 -11.40 -0.02 -1.96 16 20 H 0.11 1.73 6.49 -2.38 -0.02 1.71 16 21 C -0.08 -1.31 5.31 29.69 0.16 -1.15 16 22 C -0.16 -2.38 9.80 27.07 0.27 -2.11 16 23 C -0.16 -2.07 9.80 27.04 0.27 -1.81 16 24 C -0.09 -1.17 6.12 29.65 0.18 -0.99 16 25 C -0.10 -1.70 4.71 30.73 0.14 -1.55 16 26 C 0.12 2.58 6.58 86.35 0.57 3.15 16 27 C 0.05 1.01 5.62 86.38 0.49 1.50 16 28 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 29 H 0.39 14.52 5.76 -92.70 -0.53 13.98 16 30 H 0.12 2.81 7.97 -2.39 -0.02 2.79 16 31 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 32 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 2.87 5.76 -2.39 -0.01 2.86 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.11 1.99 5.12 -2.39 -0.01 1.98 16 36 H 0.08 1.32 7.38 -2.39 -0.02 1.31 16 37 H 0.07 1.30 8.10 -2.38 -0.02 1.28 16 38 H 0.12 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.12 1.23 8.06 -2.91 -0.02 1.21 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 43 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.09 2.09 7.10 -2.39 -0.02 2.08 16 46 H 0.11 1.82 7.99 -2.39 -0.02 1.81 16 47 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -75.70 367.59 0.61 -75.09 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: 0.38 Total: 35.81 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 6.07 Total: 17.10 kcal Atomic # 7 Polarization: -111.31 SS G_CDS: -7.65 Total: -118.96 kcal Atomic # 8 Polarization: -48.77 SS G_CDS: -0.09 Total: -48.86 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.81 kcal Total: -75.70 0.61 -75.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112607405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.136 kcal (2) G-P(sol) polarization free energy of solvation -75.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds