Wall clock time and date at job start Fri Apr 10 2020 18:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46891 * 110.99722 * 294.29943 * 13 12 10 15 15 C 1.53239 * 109.34117 * 172.74960 * 14 13 12 16 16 N 1.47080 * 108.52299 * 53.82517 * 15 14 13 17 17 C 1.34777 * 120.87786 * 128.79482 * 16 15 14 18 18 O 1.21281 * 119.99697 * 180.02562 * 17 16 15 19 19 C 1.50695 * 120.00153 * 0.02609 * 17 16 15 20 20 C 1.53001 * 119.29822 * 250.22901 * 19 17 16 21 21 C 1.53005 * 60.37662 * 248.69376 * 20 19 17 22 22 H 1.09006 * 119.29084 * 111.31214 * 21 20 19 23 23 C 1.54264 * 118.20149 * 266.38063 * 21 20 19 24 24 C 1.54886 * 104.19231 * 87.79046 * 23 21 20 25 25 C 1.54263 * 117.41137 * 44.57521 * 19 17 16 26 26 C 1.47079 * 118.23834 * 308.82388 * 16 15 14 27 27 C 1.46898 * 111.00019 * 169.99709 * 13 12 10 28 28 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 30 30 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 31 31 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 32 32 H 1.09001 * 109.49407 * 292.70541 * 14 13 12 33 33 H 1.09005 * 109.49846 * 52.78687 * 14 13 12 34 34 H 1.09005 * 109.62545 * 294.11786 * 15 14 13 35 35 H 1.08998 * 109.63186 * 173.54148 * 15 14 13 36 36 H 1.08995 * 117.45833 * 356.29366 * 20 19 17 37 37 H 1.08994 * 117.45725 * 141.10034 * 20 19 17 38 38 H 1.09002 * 110.48871 * 206.47484 * 23 21 20 39 39 H 1.08999 * 110.48651 * 329.11309 * 23 21 20 40 40 H 1.09002 * 110.75580 * 80.37400 * 24 23 21 41 41 H 1.09001 * 110.75152 * 203.74213 * 24 23 21 42 42 H 1.09004 * 110.48552 * 235.04499 * 25 19 17 43 43 H 1.09000 * 110.49084 * 357.68757 * 25 19 17 44 44 H 1.09007 * 109.62404 * 291.46984 * 26 16 15 45 45 H 1.09000 * 109.78932 * 170.98996 * 26 16 15 46 46 H 1.09000 * 109.49424 * 307.21954 * 27 13 12 47 47 H 1.09003 * 109.49023 * 67.26303 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.9704 -6.0062 -1.2751 15 6 4.0726 -7.0654 -1.1682 16 7 3.4550 -8.3459 -0.7911 17 6 3.7056 -9.4682 -1.4941 18 8 3.1873 -10.5155 -1.1693 19 6 4.6296 -9.4218 -2.6836 20 6 4.0494 -9.5898 -4.0894 21 6 4.9422 -10.6857 -3.5037 22 1 4.5040 -11.6504 -3.2476 23 6 6.4514 -10.6435 -3.8206 24 6 7.0475 -9.7435 -2.7098 25 6 5.9484 -8.6367 -2.5282 26 6 2.5564 -8.3691 0.3730 27 6 1.5140 -7.2585 0.2053 28 1 -0.4849 0.8400 0.0004 29 1 0.3535 -2.3907 -0.0068 30 1 0.6169 -4.9255 0.8690 31 1 0.6176 -4.9158 -0.9109 32 1 2.3092 -6.2520 -2.1060 33 1 3.4210 -5.0284 -1.4454 34 1 4.7934 -6.7682 -0.4064 35 1 4.5745 -7.1701 -2.1301 36 1 2.9832 -9.8004 -4.1712 37 1 4.4682 -8.9712 -4.8831 38 1 6.8797 -11.6446 -3.7715 39 1 6.6228 -10.2020 -4.8023 40 1 7.1849 -10.3080 -1.7875 41 1 7.9881 -9.2994 -3.0359 42 1 6.0376 -7.8823 -3.3099 43 1 6.0034 -8.1745 -1.5426 44 1 3.1315 -8.1971 1.2829 45 1 2.0556 -9.3353 0.4335 46 1 0.9081 -7.1888 1.1087 47 1 0.8726 -7.4866 -0.6460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113128764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:27 Heat of formation + Delta-G solvation = -24.835689 kcal Electronic energy + Delta-G solvation = -27701.298029 eV Core-core repulsion = 23885.138052 eV Total energy + Delta-G solvation = -3816.159977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.95568 -39.17655 -38.19850 -37.12649 -34.55589 -33.79899 -31.82974 -31.34993 -31.26692 -29.13112 -28.39814 -25.89496 -24.23296 -23.80604 -23.07613 -22.19798 -20.83103 -20.06256 -19.29005 -18.65840 -17.88855 -16.89548 -16.45616 -15.97977 -15.57593 -15.11821 -15.06377 -14.88879 -14.65100 -14.44349 -13.98854 -13.84660 -13.64247 -13.50397 -13.41608 -13.28649 -12.83491 -12.47686 -12.06114 -11.98222 -11.62725 -11.57668 -11.47390 -11.40716 -11.26752 -11.17328 -11.12331 -10.88200 -10.80317 -10.60994 -10.41537 -10.24869 -9.97247 -9.68301 -9.50689 -8.85340 -8.38764 -8.01549 -7.91024 -6.44815 -3.85754 2.42213 2.86595 3.15220 3.24416 3.29942 3.39086 3.85476 3.92724 4.12507 4.20727 4.32239 4.37357 4.52752 4.87049 4.90321 5.01019 5.04185 5.07199 5.12383 5.20693 5.21979 5.27482 5.33593 5.38941 5.43441 5.46061 5.49205 5.56120 5.66630 5.71625 5.75918 5.77696 5.80207 5.85806 5.88708 5.91663 6.07514 6.13259 6.19286 6.23080 6.50098 7.13294 7.29579 7.40855 7.52164 8.02865 8.12164 8.58000 9.14662 9.50898 10.02073 10.72866 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.002641 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.213279 B =10600.794572 C =11375.553899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.444 3.556 11 O -0.579 6.579 12 C 0.046 3.954 13 N -0.514 5.514 14 C 0.038 3.962 15 C 0.108 3.892 16 N -0.606 5.606 17 C 0.558 3.442 18 O -0.550 6.550 19 C -0.177 4.177 20 C -0.124 4.124 21 C -0.126 4.126 22 H 0.118 0.882 23 C -0.096 4.096 24 C -0.123 4.123 25 C -0.094 4.094 26 C 0.119 3.881 27 C 0.041 3.959 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.026 0.974 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 -18.101 -6.568 20.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.090 4.090 15 C -0.014 4.014 16 N -0.338 5.338 17 C 0.346 3.654 18 O -0.429 6.429 19 C -0.180 4.180 20 C -0.161 4.161 21 C -0.145 4.145 22 H 0.136 0.864 23 C -0.134 4.134 24 C -0.160 4.160 25 C -0.131 4.131 26 C -0.004 4.004 27 C -0.088 4.088 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.804 -18.404 -5.978 20.865 hybrid contribution -1.063 0.909 -0.510 1.489 sum 6.740 -17.495 -6.488 19.839 Atomic orbital electron populations 1.69610 1.05961 1.28203 1.50495 1.25271 0.95626 0.99751 0.97292 0.85861 0.79269 0.80816 0.78370 1.20429 1.20927 1.19374 1.19692 0.93351 0.82168 1.47639 0.87869 1.41878 1.09222 1.04613 1.64244 1.19707 0.88390 0.84490 0.84510 1.90471 1.13645 1.86870 1.55317 1.21856 0.93909 0.91118 1.01627 1.61515 1.25240 1.01367 1.35794 1.22673 0.95411 1.01535 0.89388 1.22234 0.95915 0.81543 1.01745 1.48117 1.46882 1.08821 1.30000 1.19381 0.80568 0.82961 0.82464 1.90657 1.52530 1.30180 1.69504 1.22312 0.98899 1.04470 0.92359 1.23119 0.99684 1.00656 0.92669 1.23354 0.95629 0.93653 1.01848 0.86389 1.21985 0.92160 1.00363 0.98868 1.23057 0.97899 0.96240 0.98851 1.22623 0.90480 0.96971 1.03029 1.21688 0.91592 0.99093 0.88027 1.22499 0.95393 0.89573 1.01323 0.91844 0.77486 0.89203 0.93470 0.95540 0.86636 0.90162 0.88622 0.88090 0.87898 0.90922 0.91014 0.91186 0.90940 0.90246 0.89881 0.90601 0.88962 0.89501 0.94778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 2 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.87 5.29 -10.96 -0.06 -13.92 16 10 C 0.44 10.04 7.44 -10.98 -0.08 9.96 16 11 O -0.58 -14.75 13.90 5.55 0.08 -14.67 16 12 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 13 N -0.51 -8.26 4.37 -235.77 -1.03 -9.29 16 14 C 0.04 0.59 5.25 -3.71 -0.02 0.57 16 15 C 0.11 1.39 4.92 -3.60 -0.02 1.37 16 16 N -0.61 -8.03 3.01 -172.46 -0.52 -8.55 16 17 C 0.56 7.71 7.37 -10.99 -0.08 7.62 16 18 O -0.55 -9.23 16.25 5.56 0.09 -9.14 16 19 C -0.18 -1.89 1.94 -154.55 -0.30 -2.19 16 20 C -0.12 -1.14 9.85 -26.73 -0.26 -1.40 16 21 C -0.13 -1.20 6.54 -89.50 -0.59 -1.78 16 22 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 23 C -0.10 -0.71 6.63 -25.07 -0.17 -0.88 16 24 C -0.12 -0.95 6.96 -23.55 -0.16 -1.11 16 25 C -0.09 -0.83 4.58 -23.88 -0.11 -0.94 16 26 C 0.12 1.53 6.59 -3.61 -0.02 1.51 16 27 C 0.04 0.54 5.62 -3.71 -0.02 0.52 16 28 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 30 H 0.09 1.40 7.97 -51.93 -0.41 0.99 16 31 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.12 2.11 5.76 -51.93 -0.30 1.81 16 34 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 35 H 0.10 1.04 4.48 -51.93 -0.23 0.81 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.62 7.91 -51.93 -0.41 0.21 16 43 H 0.08 0.79 6.06 -51.93 -0.31 0.48 16 44 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 45 H 0.09 1.19 7.07 -51.93 -0.37 0.82 16 46 H 0.09 1.01 7.99 -51.93 -0.41 0.59 16 47 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -31.69 369.27 -9.63 -41.32 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -7.35 Total: 10.27 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -2.10 Total: 6.23 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.88 Total: -55.20 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.17 Total: -23.81 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.69 -9.63 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113128764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.481 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds