Wall clock time and date at job start Fri Apr 10 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46891 * 110.99722 * 294.29943 * 13 12 10 15 15 C 1.53239 * 109.34117 * 172.74960 * 14 13 12 16 16 N 1.47080 * 108.52299 * 53.82517 * 15 14 13 17 17 C 1.34777 * 120.87786 * 128.79482 * 16 15 14 18 18 O 1.21281 * 119.99697 * 180.02562 * 17 16 15 19 19 C 1.50695 * 120.00153 * 0.02609 * 17 16 15 20 20 C 1.53001 * 119.29822 * 250.22901 * 19 17 16 21 21 C 1.53005 * 60.37662 * 248.69376 * 20 19 17 22 22 H 1.09006 * 119.29084 * 111.31214 * 21 20 19 23 23 C 1.54264 * 118.20149 * 266.38063 * 21 20 19 24 24 C 1.54886 * 104.19231 * 87.79046 * 23 21 20 25 25 C 1.54263 * 117.41137 * 44.57521 * 19 17 16 26 26 C 1.47079 * 118.23834 * 308.82388 * 16 15 14 27 27 C 1.46898 * 111.00019 * 169.99709 * 13 12 10 28 28 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 30 30 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 31 31 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 32 32 H 1.09001 * 109.49407 * 292.70541 * 14 13 12 33 33 H 1.09005 * 109.49846 * 52.78687 * 14 13 12 34 34 H 1.09005 * 109.62545 * 294.11786 * 15 14 13 35 35 H 1.08998 * 109.63186 * 173.54148 * 15 14 13 36 36 H 1.08995 * 117.45833 * 356.29366 * 20 19 17 37 37 H 1.08994 * 117.45725 * 141.10034 * 20 19 17 38 38 H 1.09002 * 110.48871 * 206.47484 * 23 21 20 39 39 H 1.08999 * 110.48651 * 329.11309 * 23 21 20 40 40 H 1.09002 * 110.75580 * 80.37400 * 24 23 21 41 41 H 1.09001 * 110.75152 * 203.74213 * 24 23 21 42 42 H 1.09004 * 110.48552 * 235.04499 * 25 19 17 43 43 H 1.09000 * 110.49084 * 357.68757 * 25 19 17 44 44 H 1.09007 * 109.62404 * 291.46984 * 26 16 15 45 45 H 1.09000 * 109.78932 * 170.98996 * 26 16 15 46 46 H 1.09000 * 109.49424 * 307.21954 * 27 13 12 47 47 H 1.09003 * 109.49023 * 67.26303 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.9704 -6.0062 -1.2751 15 6 4.0726 -7.0654 -1.1682 16 7 3.4550 -8.3459 -0.7911 17 6 3.7056 -9.4682 -1.4941 18 8 3.1873 -10.5155 -1.1693 19 6 4.6296 -9.4218 -2.6836 20 6 4.0494 -9.5898 -4.0894 21 6 4.9422 -10.6857 -3.5037 22 1 4.5040 -11.6504 -3.2476 23 6 6.4514 -10.6435 -3.8206 24 6 7.0475 -9.7435 -2.7098 25 6 5.9484 -8.6367 -2.5282 26 6 2.5564 -8.3691 0.3730 27 6 1.5140 -7.2585 0.2053 28 1 -0.4849 0.8400 0.0004 29 1 0.3535 -2.3907 -0.0068 30 1 0.6169 -4.9255 0.8690 31 1 0.6176 -4.9158 -0.9109 32 1 2.3092 -6.2520 -2.1060 33 1 3.4210 -5.0284 -1.4454 34 1 4.7934 -6.7682 -0.4064 35 1 4.5745 -7.1701 -2.1301 36 1 2.9832 -9.8004 -4.1712 37 1 4.4682 -8.9712 -4.8831 38 1 6.8797 -11.6446 -3.7715 39 1 6.6228 -10.2020 -4.8023 40 1 7.1849 -10.3080 -1.7875 41 1 7.9881 -9.2994 -3.0359 42 1 6.0376 -7.8823 -3.3099 43 1 6.0034 -8.1745 -1.5426 44 1 3.1315 -8.1971 1.2829 45 1 2.0556 -9.3353 0.4335 46 1 0.9081 -7.1888 1.1087 47 1 0.8726 -7.4866 -0.6460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113128764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:26 Heat of formation + Delta-G solvation = -45.922724 kcal Electronic energy + Delta-G solvation = -27702.212431 eV Core-core repulsion = 23885.138052 eV Total energy + Delta-G solvation = -3817.074379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.90390 -40.51728 -39.47860 -38.42785 -36.07747 -35.45826 -33.25261 -32.51016 -32.40352 -30.36120 -29.27969 -27.45016 -25.75243 -24.89923 -24.04366 -23.11293 -21.60407 -21.10706 -20.93405 -19.89794 -19.60180 -17.88137 -17.79130 -17.37231 -16.63692 -16.53899 -16.36875 -16.10277 -15.90614 -15.60204 -15.40465 -15.26917 -15.20113 -14.41704 -14.25685 -14.13857 -13.91173 -13.83290 -13.50817 -13.24296 -13.00870 -12.86396 -12.77798 -12.43587 -12.41274 -12.36138 -12.18432 -12.10271 -12.00882 -11.86330 -11.70142 -11.42941 -11.35702 -10.70780 -10.68465 -10.33685 -9.98870 -9.80071 -9.24376 -8.44519 -5.92711 1.39372 1.40274 1.43533 1.55893 1.84658 2.07330 2.29458 2.60498 2.71216 3.22564 3.34430 3.38397 3.49962 3.61292 3.81510 3.87139 3.97212 4.12447 4.18663 4.23380 4.24323 4.37005 4.42824 4.46833 4.48796 4.50119 4.57731 4.61587 4.68405 4.71858 4.76936 4.81258 4.89896 4.94664 4.97893 5.02422 5.13312 5.18476 5.26124 5.40303 5.43574 5.45219 5.80922 6.04060 6.11736 6.33518 6.62543 7.05143 7.15226 7.58969 8.13886 8.72952 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021713 B = 0.002641 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.213279 B =10600.794572 C =11375.553899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.328 4.328 8 H 0.082 0.918 9 N -0.575 5.575 10 C 0.444 3.556 11 O -0.609 6.609 12 C 0.058 3.942 13 N -0.530 5.530 14 C 0.042 3.958 15 C 0.119 3.881 16 N -0.606 5.606 17 C 0.552 3.448 18 O -0.586 6.586 19 C -0.194 4.194 20 C -0.114 4.114 21 C -0.126 4.126 22 H 0.102 0.898 23 C -0.090 4.090 24 C -0.121 4.121 25 C -0.093 4.093 26 C 0.118 3.882 27 C 0.048 3.952 28 H 0.276 0.724 29 H 0.395 0.605 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.032 0.968 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.589 -18.290 -7.535 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.458 4.458 8 H 0.100 0.900 9 N -0.213 5.213 10 C 0.232 3.768 11 O -0.495 6.495 12 C -0.073 4.073 13 N -0.255 5.255 14 C -0.087 4.087 15 C -0.003 4.003 16 N -0.337 5.337 17 C 0.343 3.657 18 O -0.468 6.468 19 C -0.197 4.197 20 C -0.151 4.151 21 C -0.145 4.145 22 H 0.120 0.880 23 C -0.127 4.127 24 C -0.158 4.158 25 C -0.130 4.130 26 C -0.005 4.005 27 C -0.081 4.081 28 H 0.086 0.914 29 H 0.229 0.771 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.110 0.890 37 H 0.144 0.856 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.124 0.876 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.317 -18.601 -6.946 21.527 hybrid contribution -1.231 0.875 -0.184 1.522 sum 7.086 -17.726 -7.130 20.378 Atomic orbital electron populations 1.69674 1.06874 1.29201 1.50630 1.26027 0.96494 1.02412 0.96459 0.84945 0.77933 0.76986 0.78607 1.19652 1.19857 1.19644 1.19659 0.92731 0.83861 1.49547 0.90045 1.41947 1.09306 1.04741 1.65263 1.20646 0.88310 0.85696 0.82197 1.90454 1.15391 1.87662 1.56026 1.21730 0.93599 0.88550 1.03455 1.61495 1.25568 1.02194 1.36257 1.22562 0.95982 1.00668 0.89483 1.22163 0.94831 0.80602 1.02714 1.48187 1.46739 1.08869 1.29948 1.19953 0.80444 0.82345 0.82991 1.90632 1.54121 1.31347 1.70653 1.22389 0.99320 1.06201 0.91780 1.23210 0.99366 1.00450 0.92075 1.23447 0.97141 0.92659 1.01240 0.88001 1.22006 0.90252 1.00983 0.99507 1.23054 0.98307 0.95822 0.98612 1.22652 0.89814 0.97504 1.03048 1.21705 0.91664 0.99012 0.88125 1.22520 0.95338 0.87872 1.02326 0.91414 0.77134 0.87006 0.91765 0.94974 0.89677 0.90884 0.86472 0.88965 0.85552 0.90148 0.89262 0.92292 0.89103 0.88593 0.90903 0.90488 0.88963 0.87573 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.21 13.05 21.67 0.28 -48.93 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 0.99 42.14 29.55 68.60 2.03 44.17 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.33 -18.14 9.68 84.04 0.81 -17.33 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.58 -28.65 5.29 -306.97 -1.62 -30.27 16 10 C 0.44 20.21 7.44 87.66 0.65 20.86 16 11 O -0.61 -31.66 13.90 -3.07 -0.04 -31.70 16 12 C 0.06 1.92 5.45 85.56 0.47 2.39 16 13 N -0.53 -16.46 4.37 -899.84 -3.93 -20.39 16 14 C 0.04 1.26 5.25 86.38 0.45 1.71 16 15 C 0.12 2.97 4.92 86.35 0.42 3.40 16 16 N -0.61 -15.68 3.01 -817.94 -2.46 -18.14 16 17 C 0.55 15.04 7.37 87.66 0.65 15.69 16 18 O -0.59 -19.81 16.25 -3.03 -0.05 -19.86 16 19 C -0.19 -3.90 1.94 -52.21 -0.10 -4.00 16 20 C -0.11 -1.88 9.85 30.60 0.30 -1.58 16 21 C -0.13 -2.22 6.54 -10.07 -0.07 -2.29 16 22 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 23 C -0.09 -1.11 6.63 31.67 0.21 -0.90 16 24 C -0.12 -1.60 6.96 32.66 0.23 -1.38 16 25 C -0.09 -1.48 4.58 32.44 0.15 -1.33 16 26 C 0.12 2.94 6.59 86.35 0.57 3.51 16 27 C 0.05 1.17 5.62 86.38 0.49 1.66 16 28 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 29 H 0.40 18.84 7.90 -92.71 -0.73 18.10 16 30 H 0.11 3.26 7.97 -2.38 -0.02 3.24 16 31 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 32 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 3.14 5.76 -2.38 -0.01 3.13 16 34 H 0.07 1.95 8.03 -2.38 -0.02 1.93 16 35 H 0.12 2.40 4.48 -2.39 -0.01 2.39 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 42 H 0.10 1.21 7.91 -2.38 -0.02 1.19 16 43 H 0.07 1.31 6.06 -2.39 -0.01 1.29 16 44 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.09 2.34 7.07 -2.39 -0.02 2.32 16 46 H 0.11 2.21 7.99 -2.39 -0.02 2.19 16 47 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -68.98 369.27 0.15 -68.83 By element: Atomic # 1 Polarization: 35.93 SS G_CDS: 0.25 Total: 36.18 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 5.70 Total: 20.11 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -7.74 Total: -117.73 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.09 Total: -51.56 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -68.98 0.15 -68.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113128764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.911 kcal (2) G-P(sol) polarization free energy of solvation -68.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds