Wall clock time and date at job start Fri Apr 10 2020 18:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47034 * 240.00089 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00161 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46891 * 110.99722 * 294.29943 * 13 12 10 15 15 C 1.53239 * 109.34117 * 172.74960 * 14 13 12 16 16 N 1.47080 * 108.52299 * 53.82517 * 15 14 13 17 17 C 1.34776 * 120.88052 * 128.84145 * 16 15 14 18 18 O 1.21276 * 120.00068 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99940 * 359.97438 * 17 16 15 20 20 H 1.08995 * 115.55646 * 34.34842 * 19 17 16 21 21 C 1.53121 * 117.51503 * 248.61247 * 19 17 16 22 22 C 1.52459 * 117.51164 * 180.14618 * 19 17 16 23 23 C 1.53253 * 128.58536 * 349.85485 * 22 19 17 24 24 C 1.53895 * 86.88348 * 194.88515 * 23 22 19 25 25 C 1.53254 * 128.58720 * 225.05002 * 22 19 17 26 26 C 1.47079 * 118.23834 * 308.82388 * 16 15 14 27 27 C 1.46898 * 111.00019 * 169.99709 * 13 12 10 28 28 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 30 30 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 31 31 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 32 32 H 1.09001 * 109.49407 * 292.70541 * 14 13 12 33 33 H 1.09005 * 109.49846 * 52.78687 * 14 13 12 34 34 H 1.09005 * 109.62545 * 294.11786 * 15 14 13 35 35 H 1.08998 * 109.63186 * 173.54148 * 15 14 13 36 36 H 1.09002 * 117.51571 * 359.97438 * 21 19 17 37 37 H 1.09001 * 117.51497 * 145.06611 * 21 19 17 38 38 H 1.09000 * 113.64960 * 309.38199 * 23 22 19 39 39 H 1.09003 * 113.64815 * 80.38998 * 23 22 19 40 40 H 1.08996 * 113.58842 * 270.39206 * 24 23 22 41 41 H 1.08997 * 113.58740 * 139.57345 * 24 23 22 42 42 H 1.09008 * 113.64773 * 279.61552 * 25 22 19 43 43 H 1.09003 * 113.64781 * 50.52590 * 25 22 19 44 44 H 1.09007 * 109.62404 * 291.46984 * 26 16 15 45 45 H 1.09000 * 109.78932 * 170.98996 * 26 16 15 46 46 H 1.09000 * 109.49424 * 307.21954 * 27 13 12 47 47 H 1.08999 * 109.48867 * 67.29022 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.9704 -6.0062 -1.2751 15 6 4.0726 -7.0654 -1.1682 16 7 3.4550 -8.3459 -0.7911 17 6 3.7062 -9.4685 -1.4935 18 8 3.1887 -10.5159 -1.1682 19 6 4.6302 -9.4220 -2.6831 20 1 5.4627 -8.7228 -2.6049 21 6 4.0118 -9.6336 -4.0678 22 6 4.8717 -10.7241 -3.4385 23 6 4.4692 -12.1484 -3.0411 24 6 5.4477 -12.6370 -4.1238 25 6 6.1974 -11.3055 -3.9418 26 6 2.5564 -8.3691 0.3730 27 6 1.5140 -7.2585 0.2053 28 1 -0.4849 0.8400 0.0004 29 1 0.3535 -2.3907 -0.0068 30 1 0.6169 -4.9255 0.8690 31 1 0.6176 -4.9158 -0.9109 32 1 2.3092 -6.2520 -2.1060 33 1 3.4210 -5.0284 -1.4454 34 1 4.7934 -6.7682 -0.4064 35 1 4.5745 -7.1701 -2.1301 36 1 2.9368 -9.8068 -4.1181 37 1 4.4376 -9.0735 -4.9004 38 1 4.7666 -12.4204 -2.0283 39 1 3.4268 -12.3841 -3.2555 40 1 4.9902 -12.7491 -5.1067 41 1 6.0290 -13.5093 -3.8249 42 1 6.5405 -10.8653 -4.8782 43 1 6.9763 -11.3412 -3.1801 44 1 3.1315 -8.1971 1.2829 45 1 2.0556 -9.3353 0.4335 46 1 0.9081 -7.1888 1.1087 47 1 0.8730 -7.4868 -0.6462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113386299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:52 Heat of formation + Delta-G solvation = -4.340358 kcal Electronic energy + Delta-G solvation = -27173.214873 eV Core-core repulsion = 23357.943641 eV Total energy + Delta-G solvation = -3815.271233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.69627 -39.32279 -38.36001 -37.12502 -34.51016 -33.96612 -33.69297 -31.29571 -31.08632 -28.88955 -26.04455 -25.87076 -24.63162 -23.79624 -23.32600 -23.05965 -20.93064 -19.30996 -19.01205 -18.28056 -17.91281 -17.39926 -16.24343 -15.91419 -15.45977 -15.37380 -15.22308 -15.06881 -14.81403 -14.51511 -14.25803 -13.89422 -13.80799 -13.63733 -13.03872 -12.83691 -12.54021 -12.43621 -12.22996 -11.98200 -11.79944 -11.67083 -11.59630 -11.54761 -11.26844 -11.14927 -11.12390 -10.82408 -10.57131 -10.46633 -10.32088 -10.24411 -9.94837 -9.68172 -9.49718 -8.84382 -8.38597 -8.01627 -7.91206 -6.44668 -3.85672 2.41903 2.86633 3.17538 3.23828 3.27738 3.53201 3.85274 3.92267 4.07144 4.20697 4.36861 4.46436 4.55007 4.62786 4.73218 4.89425 5.02781 5.08750 5.12238 5.20712 5.22426 5.31051 5.39294 5.41881 5.43251 5.47515 5.53106 5.57215 5.64369 5.70070 5.73047 5.79208 5.85594 5.88550 5.91588 6.06928 6.13515 6.17567 6.18525 6.22944 6.50170 7.13096 7.29298 7.41448 7.52005 8.02644 8.14342 8.58012 9.14562 9.50811 10.02059 10.72866 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.027529 B = 0.002297 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.880310 B =12185.193109 C =12780.433195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.443 3.557 11 O -0.579 6.579 12 C 0.047 3.953 13 N -0.515 5.515 14 C 0.039 3.961 15 C 0.115 3.885 16 N -0.609 5.609 17 C 0.546 3.454 18 O -0.544 6.544 19 C -0.180 4.180 20 H 0.125 0.875 21 C -0.121 4.121 22 C -0.127 4.127 23 C -0.081 4.081 24 C -0.142 4.142 25 C -0.099 4.099 26 C 0.119 3.881 27 C 0.041 3.959 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.027 0.973 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.837 -20.033 -6.912 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.228 3.772 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.089 4.089 15 C -0.008 4.008 16 N -0.342 5.342 17 C 0.334 3.666 18 O -0.422 6.422 19 C -0.201 4.201 20 H 0.142 0.858 21 C -0.158 4.158 22 C -0.128 4.128 23 C -0.119 4.119 24 C -0.180 4.180 25 C -0.136 4.136 26 C -0.003 4.003 27 C -0.088 4.088 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.105 0.895 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.561 -20.340 -6.342 22.293 hybrid contribution -0.891 1.124 -0.527 1.528 sum 5.670 -19.216 -6.870 21.180 Atomic orbital electron populations 1.69601 1.05944 1.28310 1.50385 1.25275 0.95640 0.99759 0.97280 0.85916 0.78762 0.80451 0.79072 1.19915 1.20994 1.19870 1.19641 0.93321 0.82177 1.47770 0.87927 1.41871 1.09219 1.04604 1.64218 1.19710 0.88395 0.84499 0.84550 1.90472 1.13649 1.86869 1.55343 1.21851 0.93890 0.91094 1.01628 1.61504 1.25269 1.01401 1.35774 1.22640 0.95365 1.01479 0.89409 1.21924 0.95878 0.81682 1.01284 1.48182 1.47023 1.08837 1.30155 1.19625 0.81043 0.83034 0.82861 1.90651 1.52251 1.29911 1.69415 1.22179 1.02320 1.03099 0.92469 0.85766 1.22785 0.99533 0.99989 0.93478 1.22297 0.98845 0.89959 1.01673 1.22312 0.99394 0.91435 0.98722 1.22816 0.98659 0.96830 0.99674 1.22508 0.94449 0.95841 1.00825 1.21669 0.91567 0.99059 0.88044 1.22501 0.95417 0.89571 1.01301 0.91791 0.77478 0.89201 0.93466 0.95504 0.86632 0.90136 0.89562 0.88168 0.87528 0.89479 0.91370 0.90185 0.91294 0.91226 0.89603 0.90675 0.88939 0.89527 0.94785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 2 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 3 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 9 N -0.56 -13.87 5.29 -10.96 -0.06 -13.92 16 10 C 0.44 10.04 7.44 -10.98 -0.08 9.95 16 11 O -0.58 -14.79 13.90 5.55 0.08 -14.71 16 12 C 0.05 0.80 5.45 -4.97 -0.03 0.78 16 13 N -0.51 -8.24 4.37 -235.77 -1.03 -9.28 16 14 C 0.04 0.60 5.25 -3.71 -0.02 0.58 16 15 C 0.12 1.46 6.44 -3.60 -0.02 1.44 16 16 N -0.61 -7.93 3.01 -172.46 -0.52 -8.45 16 17 C 0.55 7.26 7.49 -10.98 -0.08 7.18 16 18 O -0.54 -8.59 14.60 5.56 0.08 -8.51 16 19 C -0.18 -1.88 4.95 -91.98 -0.46 -2.34 16 20 H 0.12 1.13 6.89 -51.93 -0.36 0.77 16 21 C -0.12 -1.10 10.24 -26.94 -0.28 -1.38 16 22 C -0.13 -1.22 2.88 -154.80 -0.45 -1.67 16 23 C -0.08 -0.81 6.47 -26.13 -0.17 -0.98 16 24 C -0.14 -1.07 8.08 -25.81 -0.21 -1.28 16 25 C -0.10 -0.76 8.10 -26.14 -0.21 -0.97 16 26 C 0.12 1.52 6.59 -3.61 -0.02 1.49 16 27 C 0.04 0.53 5.62 -3.71 -0.02 0.51 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 30 H 0.09 1.40 7.97 -51.93 -0.41 0.99 16 31 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.12 2.11 5.76 -51.93 -0.30 1.81 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.90 5.79 -51.93 -0.30 0.59 16 36 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 45 H 0.09 1.17 7.07 -51.93 -0.37 0.80 16 46 H 0.09 1.00 7.99 -51.93 -0.41 0.58 16 47 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -31.31 375.85 -9.85 -41.16 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.48 Total: 10.28 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -2.28 Total: 5.52 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.88 Total: -55.07 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.16 Total: -23.22 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.31 -9.85 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113386299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.817 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds