Wall clock time and date at job start Fri Apr 10 2020 18:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48504 * 109.47034 * 240.00089 * 3 2 1 5 5 H 1.48504 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00161 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46891 * 110.99722 * 294.29943 * 13 12 10 15 15 C 1.53239 * 109.34117 * 172.74960 * 14 13 12 16 16 N 1.47080 * 108.52299 * 53.82517 * 15 14 13 17 17 C 1.34776 * 120.88052 * 128.84145 * 16 15 14 18 18 O 1.21276 * 120.00068 * 179.97438 * 17 16 15 19 19 C 1.50703 * 119.99940 * 359.97438 * 17 16 15 20 20 H 1.08995 * 115.55646 * 34.34842 * 19 17 16 21 21 C 1.53121 * 117.51503 * 248.61247 * 19 17 16 22 22 C 1.52459 * 117.51164 * 180.14618 * 19 17 16 23 23 C 1.53253 * 128.58536 * 349.85485 * 22 19 17 24 24 C 1.53895 * 86.88348 * 194.88515 * 23 22 19 25 25 C 1.53254 * 128.58720 * 225.05002 * 22 19 17 26 26 C 1.47079 * 118.23834 * 308.82388 * 16 15 14 27 27 C 1.46898 * 111.00019 * 169.99709 * 13 12 10 28 28 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 30 30 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 31 31 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 32 32 H 1.09001 * 109.49407 * 292.70541 * 14 13 12 33 33 H 1.09005 * 109.49846 * 52.78687 * 14 13 12 34 34 H 1.09005 * 109.62545 * 294.11786 * 15 14 13 35 35 H 1.08998 * 109.63186 * 173.54148 * 15 14 13 36 36 H 1.09002 * 117.51571 * 359.97438 * 21 19 17 37 37 H 1.09001 * 117.51497 * 145.06611 * 21 19 17 38 38 H 1.09000 * 113.64960 * 309.38199 * 23 22 19 39 39 H 1.09003 * 113.64815 * 80.38998 * 23 22 19 40 40 H 1.08996 * 113.58842 * 270.39206 * 24 23 22 41 41 H 1.08997 * 113.58740 * 139.57345 * 24 23 22 42 42 H 1.09008 * 113.64773 * 279.61552 * 25 22 19 43 43 H 1.09003 * 113.64781 * 50.52590 * 25 22 19 44 44 H 1.09007 * 109.62404 * 291.46984 * 26 16 15 45 45 H 1.09000 * 109.78932 * 170.98996 * 26 16 15 46 46 H 1.09000 * 109.49424 * 307.21954 * 27 13 12 47 47 H 1.08999 * 109.48867 * 67.29022 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.9704 -6.0062 -1.2751 15 6 4.0726 -7.0654 -1.1682 16 7 3.4550 -8.3459 -0.7911 17 6 3.7062 -9.4685 -1.4935 18 8 3.1887 -10.5159 -1.1682 19 6 4.6302 -9.4220 -2.6831 20 1 5.4627 -8.7228 -2.6049 21 6 4.0118 -9.6336 -4.0678 22 6 4.8717 -10.7241 -3.4385 23 6 4.4692 -12.1484 -3.0411 24 6 5.4477 -12.6370 -4.1238 25 6 6.1974 -11.3055 -3.9418 26 6 2.5564 -8.3691 0.3730 27 6 1.5140 -7.2585 0.2053 28 1 -0.4849 0.8400 0.0004 29 1 0.3535 -2.3907 -0.0068 30 1 0.6169 -4.9255 0.8690 31 1 0.6176 -4.9158 -0.9109 32 1 2.3092 -6.2520 -2.1060 33 1 3.4210 -5.0284 -1.4454 34 1 4.7934 -6.7682 -0.4064 35 1 4.5745 -7.1701 -2.1301 36 1 2.9368 -9.8068 -4.1181 37 1 4.4376 -9.0735 -4.9004 38 1 4.7666 -12.4204 -2.0283 39 1 3.4268 -12.3841 -3.2555 40 1 4.9902 -12.7491 -5.1067 41 1 6.0290 -13.5093 -3.8249 42 1 6.5405 -10.8653 -4.8782 43 1 6.9763 -11.3412 -3.1801 44 1 3.1315 -8.1971 1.2829 45 1 2.0556 -9.3353 0.4335 46 1 0.9081 -7.1888 1.1087 47 1 0.8730 -7.4868 -0.6462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113386299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:51 Heat of formation + Delta-G solvation = -24.622914 kcal Electronic energy + Delta-G solvation = -27174.094391 eV Core-core repulsion = 23357.943641 eV Total energy + Delta-G solvation = -3816.150750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64764 -40.54113 -39.67468 -38.41894 -36.04545 -35.42282 -34.61718 -33.25367 -32.18218 -30.22774 -27.53350 -26.58014 -25.97537 -25.10323 -24.19337 -23.92609 -21.98254 -21.05430 -20.00202 -19.81995 -19.09880 -18.42087 -17.78816 -17.02270 -16.61445 -16.46124 -16.29909 -16.24717 -16.08356 -15.90179 -15.42419 -15.31906 -15.26163 -15.07297 -14.20983 -13.96876 -13.67276 -13.51097 -13.29191 -13.19631 -13.00753 -12.95958 -12.77679 -12.48396 -12.41746 -12.41361 -12.28893 -12.22066 -12.16201 -12.09966 -11.42416 -11.27642 -11.03286 -10.75437 -10.60934 -10.33071 -9.99007 -9.76749 -9.23327 -8.44489 -5.92783 1.41030 1.43110 1.43796 1.53683 1.87258 2.07178 2.29350 2.70236 2.76959 3.22288 3.25597 3.37196 3.65225 3.69415 3.82334 3.88221 3.95575 3.96846 4.03714 4.14508 4.21881 4.25066 4.44041 4.47104 4.50129 4.52251 4.57971 4.63297 4.71005 4.77407 4.81681 4.85833 4.89796 4.92245 4.99524 5.03339 5.09878 5.16184 5.39152 5.42205 5.43579 5.51889 5.81418 6.04317 6.12516 6.37373 6.62372 7.11451 7.14903 7.58739 8.13726 8.72611 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.027529 B = 0.002297 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.880310 B =12185.193109 C =12780.433195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.329 4.329 8 H 0.081 0.919 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.610 6.610 12 C 0.058 3.942 13 N -0.531 5.531 14 C 0.043 3.957 15 C 0.124 3.876 16 N -0.610 5.610 17 C 0.542 3.458 18 O -0.574 6.574 19 C -0.191 4.191 20 H 0.141 0.859 21 C -0.110 4.110 22 C -0.134 4.134 23 C -0.092 4.092 24 C -0.132 4.132 25 C -0.091 4.091 26 C 0.119 3.881 27 C 0.048 3.952 28 H 0.277 0.723 29 H 0.395 0.605 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.320 -20.451 -7.928 22.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.099 0.901 9 N -0.212 5.212 10 C 0.231 3.769 11 O -0.496 6.496 12 C -0.073 4.073 13 N -0.256 5.256 14 C -0.086 4.086 15 C 0.002 3.998 16 N -0.342 5.342 17 C 0.332 3.668 18 O -0.455 6.455 19 C -0.212 4.212 20 H 0.159 0.841 21 C -0.147 4.147 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.170 4.170 25 C -0.128 4.128 26 C -0.003 4.003 27 C -0.081 4.081 28 H 0.086 0.914 29 H 0.229 0.771 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.108 0.892 37 H 0.149 0.851 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.123 0.877 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.034 -20.771 -7.359 23.132 hybrid contribution -1.054 1.160 -0.181 1.577 sum 5.980 -19.612 -7.539 21.846 Atomic orbital electron populations 1.69668 1.06841 1.29264 1.50505 1.26038 0.96527 1.02434 0.96467 0.85000 0.77730 0.76724 0.78964 1.19590 1.19786 1.19762 1.19617 0.92723 0.83871 1.49668 0.90068 1.41943 1.09309 1.04736 1.65240 1.20665 0.88319 0.85726 0.82221 1.90454 1.15410 1.87671 1.56058 1.21721 0.93582 0.88522 1.03436 1.61485 1.25595 1.02231 1.36308 1.22523 0.95965 1.00592 0.89488 1.21852 0.94784 0.80780 1.02422 1.48250 1.46958 1.08898 1.30134 1.20135 0.80941 0.82452 0.83306 1.90637 1.53573 1.30897 1.70351 1.22232 1.02536 1.04501 0.91926 0.84140 1.22865 0.99054 0.99608 0.93192 1.22506 1.00184 0.89343 1.01471 1.22309 0.99163 0.92670 0.98760 1.22796 0.97772 0.97331 0.99075 1.22512 0.93469 0.95317 1.01529 1.21667 0.91602 0.98948 0.88130 1.22521 0.95398 0.87886 1.02254 0.91407 0.77120 0.87046 0.91754 0.94854 0.89808 0.90989 0.86990 0.89223 0.85067 0.91192 0.92878 0.89244 0.90316 0.89565 0.89317 0.90696 0.88876 0.87712 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.18 13.05 21.67 0.28 -48.90 16 2 C -0.02 -0.79 5.50 84.93 0.47 -0.33 16 3 Si 0.99 42.23 29.55 68.60 2.03 44.26 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.33 -18.22 9.68 84.04 0.81 -17.40 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -28.69 5.29 -306.97 -1.62 -30.31 16 10 C 0.44 20.21 7.44 87.66 0.65 20.86 16 11 O -0.61 -31.78 13.90 -3.07 -0.04 -31.82 16 12 C 0.06 1.94 5.45 85.56 0.47 2.41 16 13 N -0.53 -16.42 4.37 -899.85 -3.93 -20.36 16 14 C 0.04 1.28 5.25 86.38 0.45 1.73 16 15 C 0.12 3.02 6.44 86.35 0.56 3.58 16 16 N -0.61 -15.28 3.01 -817.94 -2.46 -17.74 16 17 C 0.54 13.99 7.49 87.66 0.66 14.65 16 18 O -0.57 -18.14 14.60 -3.02 -0.04 -18.18 16 19 C -0.19 -3.69 4.95 -11.68 -0.06 -3.75 16 20 H 0.14 2.21 6.89 -2.39 -0.02 2.20 16 21 C -0.11 -1.79 10.24 30.46 0.31 -1.48 16 22 C -0.13 -2.37 2.88 -52.37 -0.15 -2.52 16 23 C -0.09 -1.79 6.47 30.98 0.20 -1.59 16 24 C -0.13 -1.75 8.08 31.19 0.25 -1.50 16 25 C -0.09 -1.18 8.10 30.98 0.25 -0.93 16 26 C 0.12 2.92 6.59 86.35 0.57 3.49 16 27 C 0.05 1.16 5.62 86.38 0.49 1.64 16 28 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 30 H 0.11 3.25 7.97 -2.38 -0.02 3.23 16 31 H 0.06 1.95 8.12 -2.39 -0.02 1.93 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 3.09 5.76 -2.38 -0.01 3.08 16 34 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.11 2.12 5.79 -2.39 -0.01 2.10 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.58 8.05 -2.39 -0.02 1.56 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 0.85 8.14 -2.38 -0.02 0.84 16 43 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.09 2.29 7.07 -2.39 -0.02 2.28 16 46 H 0.10 2.17 7.99 -2.39 -0.02 2.15 16 47 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -68.23 375.85 0.38 -67.85 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.25 Total: 36.34 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 5.93 Total: 18.86 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -7.74 Total: -117.31 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -0.09 Total: -50.00 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -68.23 0.38 -67.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113386299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.226 kcal (2) G-P(sol) polarization free energy of solvation -68.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds