Wall clock time and date at job start Fri Apr 10 2020 18:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86807 * 119.99997 * 2 1 4 4 H 1.48501 * 109.46948 * 269.99835 * 3 2 1 5 5 H 1.48497 * 109.46998 * 29.99678 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00079 * 3 2 1 7 7 C 1.38947 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99463 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00430 * 180.02562 * 7 2 1 10 10 C 1.34783 * 120.00010 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99704 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00082 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47068 * 180.02562 * 12 10 9 14 14 C 1.48562 * 110.99735 * 169.99915 * 13 12 10 15 15 C 1.54388 * 104.59351 * 200.95905 * 14 13 12 16 16 H 1.09002 * 117.60247 * 242.75239 * 15 14 13 17 17 C 1.54258 * 105.05977 * 23.85184 * 15 14 13 18 18 H 1.09006 * 121.78690 * 222.13371 * 17 15 14 19 19 C 1.48559 * 111.00366 * 54.58271 * 13 12 10 20 20 C 1.52998 * 59.72762 * 114.09736 * 17 15 14 21 21 H 1.09002 * 117.40819 * 252.34146 * 20 17 15 22 22 N 1.46495 * 117.44708 * 107.64679 * 20 17 15 23 23 C 1.34768 * 120.00294 * 135.77396 * 22 20 17 24 24 O 1.21286 * 120.00197 * 359.97438 * 23 22 20 25 25 C 1.50704 * 120.00356 * 180.02562 * 23 22 20 26 26 C 1.53001 * 109.47313 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.46843 * 179.97438 * 26 25 23 28 28 C 1.53000 * 117.49463 * 116.38050 * 27 26 25 29 29 C 1.52997 * 60.00347 * 107.48750 * 28 27 26 30 30 H 0.96998 * 120.00250 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00143 * 359.97438 * 9 7 2 32 32 H 1.08991 * 109.47234 * 59.99670 * 12 10 9 33 33 H 1.09000 * 109.46963 * 300.00056 * 12 10 9 34 34 H 1.09000 * 110.41409 * 82.17925 * 14 13 12 35 35 H 1.09002 * 110.51278 * 319.78346 * 14 13 12 36 36 H 1.09002 * 110.40613 * 277.81668 * 19 13 12 37 37 H 1.09000 * 110.41510 * 40.13798 * 19 13 12 38 38 H 0.97007 * 120.00102 * 315.77158 * 22 20 17 39 39 H 1.09000 * 109.47160 * 59.99548 * 25 23 22 40 40 H 1.09003 * 109.46792 * 299.99719 * 25 23 22 41 41 H 1.09000 * 109.47190 * 59.99795 * 26 25 23 42 42 H 1.09001 * 109.46634 * 299.99767 * 26 25 23 43 43 H 1.08990 * 115.56470 * 330.69100 * 27 26 25 44 44 H 1.09002 * 117.49696 * 214.97963 * 28 27 26 45 45 H 1.09002 * 117.50343 * 359.97438 * 28 27 26 46 46 H 1.08999 * 117.49685 * 252.51237 * 29 28 27 47 47 H 1.08997 * 117.50044 * 107.48590 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0021 11 8 3.4472 -3.4209 0.0021 12 6 5.5607 -2.3705 0.0033 13 7 6.0503 -3.7555 0.0037 14 6 7.5157 -3.8021 -0.2361 15 6 7.7822 -5.2375 -0.7384 16 1 8.4244 -5.8744 -0.1300 17 6 6.4370 -5.7132 -1.3245 18 1 6.0575 -6.7197 -1.1478 19 6 5.4709 -4.5254 -1.1270 20 6 7.6485 -5.5136 -2.2373 21 1 7.6357 -4.6539 -2.9073 22 7 8.3025 -6.7142 -2.7637 23 6 8.6641 -6.7708 -4.0607 24 8 8.4478 -5.8280 -4.7924 25 6 9.3363 -8.0061 -4.6024 26 6 9.6387 -7.8117 -6.0895 27 6 10.3218 -9.0656 -6.6392 28 6 9.5822 -9.8565 -7.7201 29 6 10.8128 -9.0251 -8.0877 30 1 -0.4850 0.8400 -0.0004 31 1 3.8648 -0.3633 0.0007 32 1 5.9233 -1.8563 0.8932 33 1 5.9247 -1.8571 -0.8867 34 1 8.0587 -3.6168 0.6907 35 1 7.8019 -3.0744 -0.9955 36 1 4.4741 -4.8846 -0.8710 37 1 5.4331 -3.9103 -2.0261 38 1 8.4752 -7.4684 -2.1787 39 1 8.6764 -8.8642 -4.4753 40 1 10.2667 -8.1800 -4.0617 41 1 10.2985 -6.9535 -6.2170 42 1 8.7081 -7.6380 -6.6298 43 1 10.9173 -9.6297 -5.9215 44 1 9.6912 -10.9411 -7.7134 45 1 8.6089 -9.4839 -8.0393 46 1 10.6492 -8.1052 -8.6490 47 1 11.7314 -9.5626 -8.3229 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114081636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:01 Heat of formation + Delta-G solvation = -4.874579 kcal Electronic energy + Delta-G solvation = -25946.907119 eV Core-core repulsion = 22131.612721 eV Total energy + Delta-G solvation = -3815.294398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.54597 -39.51585 -38.19627 -37.79126 -35.19139 -33.95982 -32.99976 -32.14258 -31.66033 -28.29073 -27.83729 -25.69058 -24.41511 -22.77265 -22.31193 -21.04611 -20.86380 -20.47355 -20.29364 -19.37140 -18.21128 -17.26032 -17.04291 -16.19685 -15.86681 -15.69350 -15.18810 -15.12032 -14.79176 -14.66048 -14.02690 -13.84004 -13.66052 -13.47004 -13.24358 -12.94574 -12.62415 -12.50813 -12.32178 -12.03154 -11.99175 -11.88672 -11.76788 -11.60839 -11.40656 -11.34798 -11.07590 -10.88127 -10.73390 -10.59339 -10.29804 -10.14554 -10.02701 -9.98004 -9.56320 -8.94814 -8.52942 -8.21231 -8.07540 -6.31862 -3.83350 2.30972 2.69380 3.02816 3.07035 3.15266 3.38599 3.58746 3.71163 4.01208 4.10099 4.19657 4.34713 4.50003 4.52987 4.54233 4.61183 4.73862 4.80265 4.88306 4.89424 5.03523 5.08732 5.20832 5.23891 5.25115 5.31960 5.49860 5.51377 5.57382 5.60767 5.67924 5.68502 5.70118 5.73889 5.78497 5.89532 5.97122 6.01159 6.08777 6.30498 6.57332 7.04352 7.13068 7.18450 7.57048 7.94251 8.13490 8.58547 8.94021 9.41132 9.81016 10.81084 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.001922 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.852988 B =14564.582178 C =15071.130578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.588 5.588 10 C 0.451 3.549 11 O -0.563 6.563 12 C 0.031 3.969 13 N -0.486 5.486 14 C 0.060 3.940 15 C -0.170 4.170 16 H 0.118 0.882 17 C -0.162 4.162 18 H 0.118 0.882 19 C 0.064 3.936 20 C 0.102 3.898 21 H 0.132 0.868 22 N -0.701 5.701 23 C 0.515 3.485 24 O -0.536 6.536 25 C -0.136 4.136 26 C -0.075 4.075 27 C -0.155 4.155 28 C -0.182 4.182 29 C -0.181 4.181 30 H 0.274 0.726 31 H 0.371 0.629 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.123 0.877 37 H 0.041 0.959 38 H 0.402 0.598 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.279 -15.555 -8.444 30.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.138 0.862 9 N -0.227 5.227 10 C 0.237 3.763 11 O -0.445 6.445 12 C -0.101 4.101 13 N -0.211 5.211 14 C -0.068 4.068 15 C -0.190 4.190 16 H 0.136 0.864 17 C -0.182 4.182 18 H 0.136 0.864 19 C -0.063 4.063 20 C -0.004 4.004 21 H 0.150 0.850 22 N -0.351 5.351 23 C 0.302 3.698 24 O -0.412 6.412 25 C -0.176 4.176 26 C -0.112 4.112 27 C -0.174 4.174 28 C -0.219 4.219 29 C -0.218 4.218 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.141 0.859 37 H 0.059 0.941 38 H 0.236 0.764 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 23.341 -15.664 -8.464 29.357 hybrid contribution 0.901 1.380 -0.275 1.671 sum 24.242 -14.284 -8.739 29.463 Atomic orbital electron populations 1.69615 1.05646 1.27531 1.49203 1.25036 0.95492 0.97987 0.97575 0.86679 0.79827 0.84049 0.78903 1.19627 1.20131 1.19448 1.19432 0.79168 0.96660 1.48133 0.86221 1.42189 1.07569 1.06106 1.66828 1.19584 0.88040 0.84592 0.84108 1.90489 1.69453 1.30590 1.53969 1.22135 0.95544 0.90527 1.01908 1.65417 1.02539 1.10784 1.42326 1.22688 0.90395 0.93611 1.00151 1.23805 1.01751 0.98640 0.94851 0.86418 1.24114 0.89805 1.01007 1.03282 0.86431 1.22870 0.99776 0.92109 0.91572 1.21814 0.97036 0.90137 0.91437 0.85045 1.45338 1.60944 1.18023 1.10746 1.20786 0.78156 0.89457 0.81389 1.90730 1.54548 1.38593 1.57342 1.21656 1.01832 0.96211 0.97857 1.20929 1.01096 0.96066 0.93158 1.22346 1.03509 0.99510 0.91997 1.23067 0.96840 0.98402 1.03566 1.22968 0.98359 1.02533 0.97927 0.91587 0.79655 0.88831 0.93060 0.89466 0.93655 0.85925 0.94085 0.76355 0.88576 0.88730 0.90727 0.90860 0.87732 0.88909 0.88642 0.88667 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 2 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 3 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 7 C -0.31 -8.63 10.16 -14.94 -0.15 -8.78 16 8 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 9 N -0.59 -14.03 5.09 -10.96 -0.06 -14.09 16 10 C 0.45 10.22 7.50 -10.98 -0.08 10.14 16 11 O -0.56 -14.74 13.24 5.55 0.07 -14.66 16 12 C 0.03 0.52 5.55 -4.98 -0.03 0.49 16 13 N -0.49 -7.88 5.33 -231.41 -1.23 -9.11 16 14 C 0.06 0.73 6.29 -2.18 -0.01 0.72 16 15 C -0.17 -1.84 7.05 -89.23 -0.63 -2.47 16 16 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 17 C -0.16 -2.05 7.05 -89.24 -0.63 -2.68 16 18 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 19 C 0.06 1.06 5.12 -2.18 -0.01 1.05 16 20 C 0.10 1.17 5.97 -67.93 -0.41 0.76 16 21 H 0.13 1.79 7.40 -51.93 -0.38 1.41 16 22 N -0.70 -6.20 5.56 -53.81 -0.30 -6.50 16 23 C 0.51 5.22 7.83 -10.99 -0.09 5.13 16 24 O -0.54 -7.87 15.55 5.55 0.09 -7.78 16 25 C -0.14 -0.84 5.66 -27.88 -0.16 -1.00 16 26 C -0.07 -0.55 4.78 -26.73 -0.13 -0.68 16 27 C -0.16 -0.93 5.74 -90.62 -0.52 -1.45 16 28 C -0.18 -1.08 10.18 -26.73 -0.27 -1.35 16 29 C -0.18 -1.08 10.25 -26.73 -0.27 -1.35 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.37 7.79 5.76 -40.82 -0.24 7.55 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.54 7.82 -51.93 -0.41 0.13 16 36 H 0.12 2.45 6.05 -51.93 -0.31 2.13 16 37 H 0.04 0.71 7.99 -51.93 -0.42 0.29 16 38 H 0.40 2.29 8.83 -40.82 -0.36 1.93 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.07 0.65 7.83 -51.93 -0.41 0.24 16 43 H 0.10 0.51 8.07 -51.93 -0.42 0.09 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.60 8.03 -51.93 -0.42 0.18 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -34.25 384.58 -10.61 -44.86 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -7.55 Total: 12.13 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -3.48 Total: -0.41 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.82 Total: -54.66 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: 0.16 Total: -22.44 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.25 -10.61 -44.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114081636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.983 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds