Wall clock time and date at job start Fri Apr 10 2020 18:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86807 * 119.99997 * 2 1 4 4 H 1.48501 * 109.46948 * 269.99835 * 3 2 1 5 5 H 1.48497 * 109.46998 * 29.99678 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00079 * 3 2 1 7 7 C 1.38947 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99463 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00430 * 180.02562 * 7 2 1 10 10 C 1.34783 * 120.00010 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99704 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00082 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47068 * 180.02562 * 12 10 9 14 14 C 1.48562 * 110.99735 * 169.99915 * 13 12 10 15 15 C 1.54388 * 104.59351 * 200.95905 * 14 13 12 16 16 H 1.09002 * 117.60247 * 242.75239 * 15 14 13 17 17 C 1.54258 * 105.05977 * 23.85184 * 15 14 13 18 18 H 1.09006 * 121.78690 * 222.13371 * 17 15 14 19 19 C 1.48559 * 111.00366 * 54.58271 * 13 12 10 20 20 C 1.52998 * 59.72762 * 114.09736 * 17 15 14 21 21 H 1.09002 * 117.40819 * 252.34146 * 20 17 15 22 22 N 1.46495 * 117.44708 * 107.64679 * 20 17 15 23 23 C 1.34768 * 120.00294 * 135.77396 * 22 20 17 24 24 O 1.21286 * 120.00197 * 359.97438 * 23 22 20 25 25 C 1.50704 * 120.00356 * 180.02562 * 23 22 20 26 26 C 1.53001 * 109.47313 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.46843 * 179.97438 * 26 25 23 28 28 C 1.53000 * 117.49463 * 116.38050 * 27 26 25 29 29 C 1.52997 * 60.00347 * 107.48750 * 28 27 26 30 30 H 0.96998 * 120.00250 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00143 * 359.97438 * 9 7 2 32 32 H 1.08991 * 109.47234 * 59.99670 * 12 10 9 33 33 H 1.09000 * 109.46963 * 300.00056 * 12 10 9 34 34 H 1.09000 * 110.41409 * 82.17925 * 14 13 12 35 35 H 1.09002 * 110.51278 * 319.78346 * 14 13 12 36 36 H 1.09002 * 110.40613 * 277.81668 * 19 13 12 37 37 H 1.09000 * 110.41510 * 40.13798 * 19 13 12 38 38 H 0.97007 * 120.00102 * 315.77158 * 22 20 17 39 39 H 1.09000 * 109.47160 * 59.99548 * 25 23 22 40 40 H 1.09003 * 109.46792 * 299.99719 * 25 23 22 41 41 H 1.09000 * 109.47190 * 59.99795 * 26 25 23 42 42 H 1.09001 * 109.46634 * 299.99767 * 26 25 23 43 43 H 1.08990 * 115.56470 * 330.69100 * 27 26 25 44 44 H 1.09002 * 117.49696 * 214.97963 * 28 27 26 45 45 H 1.09002 * 117.50343 * 359.97438 * 28 27 26 46 46 H 1.08999 * 117.49685 * 252.51237 * 29 28 27 47 47 H 1.08997 * 117.50044 * 107.48590 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0014 9 7 3.3798 -1.2033 0.0011 10 6 4.0537 -2.3705 0.0021 11 8 3.4472 -3.4209 0.0021 12 6 5.5607 -2.3705 0.0033 13 7 6.0503 -3.7555 0.0037 14 6 7.5157 -3.8021 -0.2361 15 6 7.7822 -5.2375 -0.7384 16 1 8.4244 -5.8744 -0.1300 17 6 6.4370 -5.7132 -1.3245 18 1 6.0575 -6.7197 -1.1478 19 6 5.4709 -4.5254 -1.1270 20 6 7.6485 -5.5136 -2.2373 21 1 7.6357 -4.6539 -2.9073 22 7 8.3025 -6.7142 -2.7637 23 6 8.6641 -6.7708 -4.0607 24 8 8.4478 -5.8280 -4.7924 25 6 9.3363 -8.0061 -4.6024 26 6 9.6387 -7.8117 -6.0895 27 6 10.3218 -9.0656 -6.6392 28 6 9.5822 -9.8565 -7.7201 29 6 10.8128 -9.0251 -8.0877 30 1 -0.4850 0.8400 -0.0004 31 1 3.8648 -0.3633 0.0007 32 1 5.9233 -1.8563 0.8932 33 1 5.9247 -1.8571 -0.8867 34 1 8.0587 -3.6168 0.6907 35 1 7.8019 -3.0744 -0.9955 36 1 4.4741 -4.8846 -0.8710 37 1 5.4331 -3.9103 -2.0261 38 1 8.4752 -7.4684 -2.1787 39 1 8.6764 -8.8642 -4.4753 40 1 10.2667 -8.1800 -4.0617 41 1 10.2985 -6.9535 -6.2170 42 1 8.7081 -7.6380 -6.6298 43 1 10.9173 -9.6297 -5.9215 44 1 9.6912 -10.9411 -7.7134 45 1 8.6089 -9.4839 -8.0393 46 1 10.6492 -8.1052 -8.6490 47 1 11.7314 -9.5626 -8.3229 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114081636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:00 Heat of formation + Delta-G solvation = -31.259563 kcal Electronic energy + Delta-G solvation = -25948.051258 eV Core-core repulsion = 22131.612721 eV Total energy + Delta-G solvation = -3816.438537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.56251 -40.62553 -39.73729 -38.35907 -36.44001 -35.80190 -33.96034 -33.73519 -32.83962 -29.41260 -29.26518 -26.77453 -25.87120 -23.51801 -23.20147 -22.00585 -21.56324 -21.38477 -21.24124 -21.12558 -20.13520 -18.07331 -17.93250 -17.61688 -16.84432 -16.77469 -16.45149 -16.33543 -16.12552 -15.61156 -15.27901 -14.95378 -14.90203 -14.67005 -14.41949 -14.34074 -14.07597 -13.77052 -13.38449 -13.21680 -13.07571 -12.94572 -12.54664 -12.46868 -12.44168 -12.37447 -12.24633 -12.13239 -11.99733 -11.90986 -11.51162 -11.24946 -11.12431 -10.89100 -10.75632 -10.32751 -10.25303 -9.80334 -9.42246 -8.43162 -6.04093 1.28785 1.33800 1.42924 1.52412 1.90874 1.91815 2.21253 2.58266 2.75071 2.92099 3.12716 3.17490 3.54969 3.66978 3.70234 3.79435 3.83286 4.03899 4.04650 4.07509 4.18107 4.25414 4.32442 4.33875 4.40498 4.48229 4.53942 4.57831 4.63894 4.74330 4.81628 4.85870 4.97822 5.05438 5.07369 5.12010 5.14663 5.21856 5.28341 5.42321 5.48315 5.50954 5.77132 5.86748 6.00369 6.50258 6.56936 6.85918 7.22205 7.36357 7.93143 8.74323 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021924 B = 0.001922 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.852988 B =14564.582178 C =15071.130578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.230 1.230 7 C -0.329 4.329 8 H 0.056 0.944 9 N -0.589 5.589 10 C 0.448 3.552 11 O -0.605 6.605 12 C 0.041 3.959 13 N -0.503 5.503 14 C 0.057 3.943 15 C -0.142 4.142 16 H 0.151 0.849 17 C -0.176 4.176 18 H 0.126 0.874 19 C 0.064 3.936 20 C 0.108 3.892 21 H 0.107 0.893 22 N -0.686 5.686 23 C 0.510 3.490 24 O -0.590 6.590 25 C -0.124 4.124 26 C -0.074 4.074 27 C -0.150 4.150 28 C -0.185 4.185 29 C -0.188 4.188 30 H 0.279 0.721 31 H 0.389 0.611 32 H 0.127 0.873 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.422 0.578 39 H 0.119 0.881 40 H 0.127 0.873 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.793 -15.516 -7.493 33.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.213 4.213 3 Si 0.784 3.216 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.154 1.154 7 C -0.458 4.458 8 H 0.074 0.926 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.490 6.490 12 C -0.090 4.090 13 N -0.228 5.228 14 C -0.070 4.070 15 C -0.162 4.162 16 H 0.169 0.831 17 C -0.196 4.196 18 H 0.144 0.856 19 C -0.063 4.063 20 C 0.000 4.000 21 H 0.124 0.876 22 N -0.337 5.337 23 C 0.299 3.701 24 O -0.469 6.469 25 C -0.164 4.164 26 C -0.112 4.112 27 C -0.168 4.168 28 C -0.222 4.222 29 C -0.225 4.225 30 H 0.089 0.911 31 H 0.225 0.775 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.260 0.740 39 H 0.137 0.863 40 H 0.145 0.855 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.144 0.856 44 H 0.124 0.876 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 27.895 -15.672 -7.484 32.859 hybrid contribution -0.579 1.239 -0.607 1.496 sum 27.316 -14.433 -8.091 31.936 Atomic orbital electron populations 1.69796 1.08111 1.29268 1.50179 1.26103 0.96470 1.02684 0.96020 0.85382 0.79598 0.76807 0.79861 1.18372 1.19833 1.15357 1.19003 0.81393 0.94976 1.50418 0.92594 1.42015 1.05876 1.07501 1.67719 1.20816 0.90745 0.83462 0.81385 1.90498 1.71312 1.32250 1.54899 1.22097 0.90416 0.91954 1.04565 1.65413 1.05081 1.10126 1.42173 1.22844 0.87655 0.94721 1.01827 1.23928 0.99847 0.98095 0.94296 0.83099 1.23915 0.90016 0.99853 1.05828 0.85562 1.22597 0.99058 0.93640 0.91046 1.21526 0.96356 0.90485 0.91624 0.87562 1.45215 1.59878 1.17803 1.10776 1.21556 0.77412 0.89934 0.81177 1.90716 1.56778 1.40784 1.58662 1.21683 1.03309 0.94590 0.96787 1.20864 0.99798 0.96410 0.94157 1.22357 1.03427 0.98796 0.92263 1.23116 0.96395 0.99108 1.03614 1.23039 0.98967 1.02398 0.98107 0.91113 0.77505 0.85561 0.90548 0.86843 0.92877 0.90400 0.95861 0.74049 0.86340 0.85457 0.92300 0.93226 0.85629 0.87625 0.89613 0.89650 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.96 21.66 0.30 -56.53 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.96 39.34 27.74 68.60 1.90 41.24 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 7 C -0.33 -19.53 10.16 84.04 0.85 -18.68 16 8 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 9 N -0.59 -28.35 5.09 -306.98 -1.56 -29.92 16 10 C 0.45 20.68 7.50 87.65 0.66 21.34 16 11 O -0.61 -33.65 13.24 -3.07 -0.04 -33.69 16 12 C 0.04 1.31 5.55 85.56 0.47 1.79 16 13 N -0.50 -15.60 5.33 -886.06 -4.73 -20.33 16 14 C 0.06 1.19 6.29 86.45 0.54 1.74 16 15 C -0.14 -2.60 7.05 -9.90 -0.07 -2.67 16 16 H 0.15 1.85 8.14 -2.39 -0.02 1.83 16 17 C -0.18 -4.32 7.05 -9.90 -0.07 -4.39 16 18 H 0.13 2.85 8.14 -2.38 -0.02 2.83 16 19 C 0.06 2.21 5.12 86.45 0.44 2.65 16 20 C 0.11 2.29 5.97 44.99 0.27 2.56 16 21 H 0.11 2.89 7.40 -2.39 -0.02 2.88 16 22 N -0.69 -10.50 5.56 -442.55 -2.46 -12.96 16 23 C 0.51 9.64 7.83 87.66 0.69 10.33 16 24 O -0.59 -17.56 15.55 -3.05 -0.05 -17.61 16 25 C -0.12 -1.22 5.66 29.85 0.17 -1.05 16 26 C -0.07 -1.04 4.78 30.59 0.15 -0.90 16 27 C -0.15 -1.51 5.74 -10.79 -0.06 -1.57 16 28 C -0.19 -1.97 10.18 30.59 0.31 -1.66 16 29 C -0.19 -2.05 10.25 30.60 0.31 -1.74 16 30 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.39 15.54 5.76 -92.71 -0.53 15.01 16 32 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 33 H 0.08 2.11 7.88 -2.39 -0.02 2.09 16 34 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.07 7.82 -2.39 -0.02 1.06 16 36 H 0.08 3.36 6.05 -2.39 -0.01 3.35 16 37 H 0.02 0.84 7.99 -2.39 -0.02 0.83 16 38 H 0.42 3.22 8.83 -92.70 -0.82 2.40 16 39 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 42 H 0.05 0.92 7.83 -2.39 -0.02 0.90 16 43 H 0.13 0.76 8.07 -2.39 -0.02 0.74 16 44 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.09 1.06 8.03 -2.39 -0.02 1.05 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -83.80 384.58 -1.92 -85.72 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.42 Total: 36.65 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.13 Total: 7.43 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -8.45 Total: -119.74 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -0.09 Total: -51.30 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 1.90 Total: 41.24 kcal Total: -83.80 -1.92 -85.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114081636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.465 kcal (2) G-P(sol) polarization free energy of solvation -83.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds