Wall clock time and date at job start Fri Apr 10 2020 18:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 115.55020 * 2 1 4 4 C 1.53004 * 117.49829 * 214.28971 * 2 1 3 5 5 C 1.52999 * 60.00044 * 252.51155 * 4 2 1 6 6 H 1.09004 * 117.51563 * 252.51897 * 5 4 2 7 7 C 1.50702 * 117.50002 * 107.49264 * 5 4 2 8 8 O 1.21282 * 119.99647 * 291.37650 * 7 5 4 9 9 N 1.34777 * 120.00030 * 111.37674 * 7 5 4 10 10 C 1.46501 * 119.99816 * 180.02562 * 9 7 5 11 11 H 1.08993 * 115.49524 * 9.61168 * 10 9 7 12 12 C 1.57018 * 118.25111 * 223.47048 * 10 9 7 13 13 H 1.08998 * 121.18711 * 3.75352 * 12 10 9 14 14 C 1.54377 * 118.21057 * 161.86611 * 12 10 9 15 15 N 1.48550 * 104.59714 * 86.26158 * 14 12 10 16 16 C 1.46900 * 111.00124 * 200.96017 * 15 14 12 17 17 C 1.50704 * 109.47180 * 285.41690 * 16 15 14 18 18 O 1.21287 * 119.99706 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99864 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99440 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00237 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99524 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00438 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00002 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47145 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47353 * 119.99601 * 24 22 20 27 27 H 1.48504 * 109.47184 * 240.00180 * 24 22 20 28 28 C 1.48561 * 104.22474 * 320.51503 * 15 14 12 29 29 C 1.53000 * 117.44177 * 155.00206 * 10 9 7 30 30 H 1.09002 * 119.52778 * 355.90387 * 29 10 9 31 31 H 1.09005 * 109.46853 * 274.32554 * 1 2 3 32 32 H 1.08994 * 109.47078 * 34.33476 * 1 2 3 33 33 H 1.09000 * 109.46912 * 154.33350 * 1 2 3 34 34 H 1.09005 * 109.47366 * 205.67547 * 3 2 1 35 35 H 1.09004 * 109.46748 * 325.66495 * 3 2 1 36 36 H 1.08995 * 109.47349 * 85.67161 * 3 2 1 37 37 H 1.09003 * 117.49724 * 145.01682 * 4 2 1 38 38 H 1.08998 * 117.50020 * 359.97438 * 4 2 1 39 39 H 0.96998 * 120.00017 * 359.97438 * 9 7 5 40 40 H 1.09007 * 110.40921 * 327.47874 * 14 12 10 41 41 H 1.09003 * 110.51007 * 205.09750 * 14 12 10 42 42 H 1.09001 * 109.47233 * 45.41710 * 16 15 14 43 43 H 1.08997 * 109.47696 * 165.42130 * 16 15 14 44 44 H 0.96999 * 120.00117 * 0.02562 * 19 17 16 45 45 H 0.96999 * 120.00329 * 179.97438 * 23 22 20 46 46 H 1.08997 * 110.41547 * 280.70846 * 28 15 14 47 47 H 1.09001 * 110.41241 * 158.26019 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1213 -0.7646 5 6 2.2365 -1.1208 0.7654 6 1 3.1714 -0.8747 1.2689 7 6 1.3721 -2.1402 1.4616 8 8 0.1639 -2.0528 1.4020 9 7 1.9417 -3.1489 2.1505 10 6 1.1013 -4.1402 2.8268 11 1 0.0377 -4.0909 2.5938 12 6 1.4968 -4.5819 4.2808 13 1 2.3364 -4.1217 4.8017 14 6 0.4251 -5.2736 5.1503 15 7 0.5209 -6.7114 4.7893 16 6 -0.7169 -7.4240 5.1325 17 6 -0.7838 -7.6248 6.6246 18 8 0.1114 -7.2142 7.3324 19 7 -1.8389 -8.2597 7.1725 20 6 -1.9000 -8.4419 8.5300 21 1 -1.1029 -8.0762 9.1602 22 6 -2.9874 -9.0969 9.0947 23 7 -3.9571 -9.5423 8.3278 24 14 -3.0711 -9.3445 10.9444 25 1 -1.8638 -8.7556 11.5777 26 1 -4.2858 -8.6781 11.4786 27 1 -3.1296 -10.7972 11.2472 28 6 0.7416 -6.7050 3.3202 29 6 1.7051 -5.5236 3.0768 30 1 2.6991 -5.7533 2.6927 31 1 -0.3633 0.0775 1.0248 32 1 -0.3633 0.8486 -0.5796 33 1 -0.3633 -0.9263 -0.4451 34 1 3.1823 1.3087 -0.4453 35 1 1.5810 2.0741 -0.5797 36 1 2.2767 1.7416 1.0247 37 1 3.1716 -0.8756 -1.2680 38 1 1.6113 -1.8592 -1.2673 39 1 2.9080 -3.2189 2.1979 40 1 -0.5657 -4.8869 4.9116 41 1 0.6425 -5.1320 6.2090 42 1 -1.5760 -6.8381 4.8058 43 1 -0.7280 -8.3936 4.6347 44 1 -2.5550 -8.5878 6.6064 45 1 -4.7161 -9.9999 8.7221 46 1 -0.1995 -6.5423 2.7950 47 1 1.1996 -7.6411 3.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114142173.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:10 Heat of formation + Delta-G solvation = -29.051689 kcal Electronic energy + Delta-G solvation = -26272.651529 eV Core-core repulsion = 22456.308732 eV Total energy + Delta-G solvation = -3816.342796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.54550 -40.82643 -39.73114 -38.15954 -36.29344 -35.77039 -33.73678 -33.21324 -30.41872 -29.44122 -29.06505 -28.33995 -26.69434 -25.41834 -23.40146 -22.03264 -21.52789 -21.28252 -20.90495 -20.01589 -19.85958 -18.15789 -17.96262 -17.55543 -16.68367 -16.40165 -16.31942 -16.04773 -15.67290 -15.46907 -15.18445 -14.94083 -14.81494 -14.52667 -14.21096 -14.09148 -13.85187 -13.56941 -13.47603 -13.38142 -13.14752 -12.97236 -12.87569 -12.70753 -12.52279 -12.42671 -12.40467 -12.12529 -12.12001 -11.89093 -11.50579 -11.19172 -11.12716 -10.92232 -10.48886 -10.34242 -10.01916 -9.76955 -9.40186 -8.47477 -5.96268 1.35657 1.36432 1.40525 1.55010 1.83857 2.04167 2.27692 2.54198 2.76036 2.83769 3.18902 3.34183 3.49564 3.60651 3.64765 3.72899 3.79866 3.85485 4.06973 4.12101 4.19508 4.23201 4.27301 4.38604 4.48038 4.51160 4.58380 4.67807 4.77702 4.82224 4.85922 4.89428 4.99051 5.07069 5.08395 5.10128 5.11696 5.12810 5.31734 5.40119 5.43500 5.53813 5.78172 5.84499 6.05622 6.48700 6.59708 7.12143 7.20228 7.55285 8.11307 8.70303 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.028789 B = 0.001929 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.355714 B =14514.485816 C =14800.437303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.106 4.106 3 C -0.113 4.113 4 C -0.131 4.131 5 C -0.191 4.191 6 H 0.151 0.849 7 C 0.540 3.460 8 O -0.572 6.572 9 N -0.682 5.682 10 C 0.116 3.884 11 H 0.114 0.886 12 C -0.174 4.174 13 H 0.129 0.871 14 C 0.067 3.933 15 N -0.504 5.504 16 C 0.046 3.954 17 C 0.442 3.558 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.270 1.270 28 C 0.057 3.943 29 C -0.142 4.142 30 H 0.145 0.855 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.133 0.867 38 H 0.088 0.912 39 H 0.419 0.581 40 H 0.036 0.964 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.114 0.886 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.054 0.946 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.876 16.544 -21.737 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C -0.170 4.170 4 C -0.168 4.168 5 C -0.212 4.212 6 H 0.168 0.832 7 C 0.328 3.672 8 O -0.451 6.451 9 N -0.332 5.332 10 C 0.008 3.992 11 H 0.131 0.869 12 C -0.195 4.195 13 H 0.147 0.853 14 C -0.061 4.061 15 N -0.229 5.229 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.501 6.501 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.070 4.070 29 C -0.162 4.162 30 H 0.163 0.837 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.151 0.849 38 H 0.107 0.893 39 H 0.257 0.743 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.132 0.868 44 H 0.229 0.771 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.869 16.494 -20.978 30.074 hybrid contribution -1.109 -0.389 0.798 1.421 sum 12.760 16.105 -20.180 28.799 Atomic orbital electron populations 1.21275 0.92457 1.00977 1.01114 1.21703 0.94911 0.92035 1.01996 1.21402 1.00753 0.92328 1.02502 1.23314 1.03561 1.00247 0.89668 1.22417 1.02317 0.99867 0.96558 0.83185 1.20326 0.88096 0.81140 0.77593 1.90720 1.16582 1.75292 1.62465 1.45119 1.10545 1.26122 1.51389 1.22121 0.95393 0.89037 0.92628 0.86855 1.24494 1.01688 1.04172 0.89130 0.85318 1.22510 0.96729 0.87219 0.99633 1.65236 1.32814 1.11125 1.13692 1.21920 0.92495 1.01576 0.92573 1.20723 0.82979 0.82367 0.90974 1.90477 1.40222 1.55070 1.64354 1.41938 1.20244 1.51444 1.07693 1.19694 1.06549 1.36222 0.83672 0.90355 1.26054 0.94553 0.96001 1.04804 1.69679 1.10096 1.38942 1.37522 0.84858 0.78217 0.78321 0.76849 1.19820 1.19632 1.19482 1.22788 0.98362 0.98998 0.86891 1.23903 1.01880 0.89020 1.01416 0.83695 0.93822 0.91907 0.93630 0.90366 0.91234 0.92087 0.84899 0.89317 0.74337 0.94604 0.91657 0.91456 0.86766 0.77052 0.91314 0.92787 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 8.09 71.98 0.58 -1.31 16 2 C -0.11 -1.41 2.70 -52.18 -0.14 -1.55 16 3 C -0.11 -0.96 9.85 71.98 0.71 -0.25 16 4 C -0.13 -1.32 9.53 30.60 0.29 -1.03 16 5 C -0.19 -2.39 5.91 -11.54 -0.07 -2.46 16 6 H 0.15 1.05 8.14 -2.38 -0.02 1.03 16 7 C 0.54 10.72 7.59 87.66 0.67 11.38 16 8 O -0.57 -16.29 12.67 -3.04 -0.04 -16.32 16 9 N -0.68 -11.12 5.60 -435.88 -2.44 -13.56 16 10 C 0.12 2.46 6.15 46.40 0.29 2.75 16 11 H 0.11 2.98 7.40 -2.39 -0.02 2.97 16 12 C -0.17 -4.25 7.26 -8.49 -0.06 -4.31 16 13 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 14 C 0.07 2.23 5.75 86.45 0.50 2.73 16 15 N -0.50 -16.90 4.98 -886.05 -4.41 -21.31 16 16 C 0.05 1.66 5.32 85.56 0.46 2.12 16 17 C 0.44 21.84 7.63 87.66 0.67 22.51 16 18 O -0.62 -35.15 14.80 -3.05 -0.05 -35.20 16 19 N -0.58 -30.44 5.29 -306.98 -1.62 -32.06 16 20 C -0.33 -19.30 9.68 84.04 0.81 -18.49 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 22 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 23 N -0.92 -50.66 13.05 21.66 0.28 -50.38 16 24 Si 0.99 43.80 29.55 68.60 2.03 45.83 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 28 C 0.06 1.35 6.25 86.45 0.54 1.89 16 29 C -0.14 -2.82 6.91 -9.90 -0.07 -2.89 16 30 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.02 7.26 -2.38 -0.02 1.00 16 32 H 0.06 0.95 7.92 -2.39 -0.02 0.93 16 33 H 0.04 1.00 7.01 -2.39 -0.02 0.99 16 34 H 0.08 0.38 7.90 -2.38 -0.02 0.36 16 35 H 0.07 0.55 7.92 -2.39 -0.02 0.53 16 36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.13 0.61 8.05 -2.39 -0.02 0.59 16 38 H 0.09 1.13 8.05 -2.39 -0.02 1.11 16 39 H 0.42 4.02 8.83 -92.71 -0.82 3.20 16 40 H 0.04 1.20 7.75 -2.38 -0.02 1.18 16 41 H 0.06 2.64 7.23 -2.39 -0.02 2.62 16 42 H 0.07 2.24 7.77 -2.39 -0.02 2.22 16 43 H 0.11 3.58 8.08 -2.39 -0.02 3.56 16 44 H 0.40 19.86 7.90 -92.71 -0.73 19.13 16 45 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 46 H 0.05 1.22 7.99 -2.39 -0.02 1.20 16 47 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -75.35 384.62 -1.17 -76.52 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: -0.56 Total: 35.71 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.64 Total: 10.77 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -8.19 Total: -117.31 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -0.08 Total: -51.52 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -75.35 -1.17 -76.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114142173.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.468 kcal (2) G-P(sol) polarization free energy of solvation -75.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds