Wall clock time and date at job start Fri Apr 10 2020 18:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 112.84892 * 2 1 4 4 O 1.21277 * 120.00232 * 228.80146 * 3 2 1 5 5 N 1.34780 * 120.00009 * 48.80486 * 3 2 1 6 6 C 1.46499 * 119.99953 * 179.97438 * 5 3 2 7 7 H 1.09003 * 115.51400 * 350.42589 * 6 5 3 8 8 C 1.52996 * 117.44578 * 204.99906 * 6 5 3 9 9 H 1.08998 * 119.52413 * 5.69592 * 8 6 5 10 10 C 1.54380 * 118.12791 * 160.73113 * 8 6 5 11 11 N 1.48563 * 104.59521 * 87.23255 * 10 8 6 12 12 C 1.46896 * 110.99925 * 200.96100 * 11 10 8 13 13 C 1.50700 * 109.46942 * 169.99767 * 12 11 10 14 14 O 1.21293 * 120.00282 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00075 * 179.97438 * 13 12 11 16 16 C 1.37104 * 120.00173 * 180.02562 * 15 13 12 17 17 H 1.08002 * 119.99666 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00001 * 180.27893 * 16 15 13 19 19 N 1.31407 * 120.00135 * 179.72366 * 18 16 15 20 20 Si 1.86800 * 120.00194 * 359.72088 * 18 16 15 21 21 H 1.48500 * 109.47210 * 89.99937 * 20 18 16 22 22 H 1.48496 * 109.47530 * 210.00374 * 20 18 16 23 23 H 1.48501 * 109.47312 * 330.00618 * 20 18 16 24 24 C 1.48569 * 104.22138 * 320.51630 * 11 10 8 25 25 C 1.53003 * 117.40434 * 135.78080 * 6 5 3 26 26 H 1.09000 * 119.52520 * 355.93289 * 25 6 5 27 27 C 1.53786 * 113.68835 * 131.26837 * 2 1 3 28 28 C 1.53781 * 87.08031 * 89.12565 * 27 2 1 29 29 C 1.53777 * 113.61205 * 228.80060 * 2 1 3 30 30 H 1.08996 * 109.47061 * 69.66612 * 1 2 3 31 31 H 1.09004 * 109.47146 * 189.67032 * 1 2 3 32 32 H 1.09003 * 109.46919 * 309.66799 * 1 2 3 33 33 H 0.97002 * 119.99997 * 359.97438 * 5 3 2 34 34 H 1.08998 * 110.41372 * 328.45652 * 10 8 6 35 35 H 1.09001 * 110.41368 * 206.00596 * 10 8 6 36 36 H 1.08994 * 109.47346 * 50.00073 * 12 11 10 37 37 H 1.08998 * 109.47279 * 289.99745 * 12 11 10 38 38 H 0.97000 * 120.00140 * 0.02562 * 15 13 12 39 39 H 0.97004 * 120.00486 * 179.97438 * 19 18 16 40 40 H 1.09002 * 110.41022 * 158.25895 * 24 11 10 41 41 H 1.08995 * 110.41186 * 280.70847 * 24 11 10 42 42 H 1.09000 * 113.61085 * 203.67405 * 27 2 1 43 43 H 1.09002 * 113.61640 * 334.57813 * 27 2 1 44 44 H 1.08997 * 113.61538 * 270.88382 * 28 27 2 45 45 H 1.08999 * 113.61312 * 139.98055 * 28 27 2 46 46 H 1.08998 * 113.61588 * 25.35340 * 29 2 1 47 47 H 1.09004 * 113.61200 * 156.25056 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9882 1.6789 -0.7903 5 7 1.6684 2.3083 0.8783 6 6 2.2377 3.6581 0.8787 7 1 3.1224 3.7947 0.2568 8 6 2.1624 4.4549 2.1826 9 1 1.7818 3.9748 3.0842 10 6 3.1196 5.6530 2.3598 11 7 2.3989 6.8011 1.7519 12 6 3.3319 7.8769 1.3911 13 6 2.6117 8.9094 0.5627 14 8 1.4369 8.7633 0.2985 15 7 3.2729 9.9953 0.1154 16 6 2.6176 10.9350 -0.6378 17 1 1.5716 10.8048 -0.8730 18 6 3.3008 12.0516 -1.1038 19 7 2.6741 12.9495 -1.8303 20 14 5.1102 12.2763 -0.6976 21 1 5.9374 11.6378 -1.7527 22 1 5.4261 13.7257 -0.6303 23 1 5.4056 11.6440 0.6132 24 6 1.7537 6.2280 0.5426 25 6 1.2637 4.8331 0.9871 26 1 0.1905 4.6425 0.9927 27 6 2.1479 -0.9289 1.0585 28 6 2.0950 -2.0420 -0.0012 29 6 2.1460 -0.9281 -1.0602 30 1 -0.3633 0.3571 -0.9636 31 1 -0.3634 -1.0131 0.1726 32 1 -0.3633 0.6560 0.7911 33 1 0.9700 2.0763 1.5102 34 1 4.0572 5.4715 1.8343 35 1 3.3054 5.8380 3.4178 36 1 4.1595 7.4622 0.8156 37 1 3.7173 8.3429 2.2979 38 1 4.2125 10.1120 0.3263 39 1 3.1509 13.7292 -2.1553 40 1 0.9109 6.8459 0.2325 41 1 2.4774 6.1364 -0.2672 42 1 3.1609 -0.6488 1.3473 43 1 1.4973 -1.1094 1.9142 44 1 1.1594 -2.6013 -0.0006 45 1 2.9743 -2.6861 -0.0022 46 1 1.4939 -1.1080 -1.9149 47 1 3.1585 -0.6478 -1.3506 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114681587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:24 Heat of formation + Delta-G solvation = -2.807543 kcal Electronic energy + Delta-G solvation = -26739.137153 eV Core-core repulsion = 22923.932389 eV Total energy + Delta-G solvation = -3815.204765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.02869 -40.02099 -38.36266 -37.70834 -35.18774 -33.96226 -32.71603 -31.67555 -29.98822 -28.28373 -27.74469 -26.10687 -25.45771 -24.46157 -22.55020 -21.16333 -21.00743 -20.30734 -19.37526 -18.90280 -18.20507 -17.53452 -16.98729 -15.92104 -15.68707 -15.44063 -15.18943 -15.00169 -14.78696 -14.61485 -13.94939 -13.74319 -13.57412 -13.26098 -13.14307 -12.95799 -12.81107 -12.73252 -12.47872 -12.34546 -12.03585 -11.88484 -11.76505 -11.55853 -11.39764 -11.34393 -11.07276 -10.94344 -10.87239 -10.73033 -10.59278 -10.10418 -9.97995 -9.84259 -9.56217 -8.93173 -8.52737 -8.21152 -8.07297 -6.31735 -3.83217 2.29530 2.71981 3.02921 3.07088 3.15310 3.58704 3.71264 3.98265 4.00511 4.07944 4.10451 4.26385 4.35882 4.51104 4.53260 4.62767 4.75693 4.89251 4.98982 5.07017 5.09760 5.18107 5.20959 5.29528 5.35760 5.36651 5.43794 5.51239 5.57580 5.61010 5.61269 5.68251 5.70333 5.77943 5.79391 5.89778 5.99062 6.01742 6.09753 6.32135 6.57679 7.04611 7.13330 7.21342 7.57173 7.96346 8.13626 8.58627 8.94113 9.41236 9.81088 10.81195 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.026425 B = 0.002159 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.333644 B =12965.210875 C =13121.771242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 C 0.532 3.468 4 O -0.534 6.534 5 N -0.697 5.697 6 C 0.102 3.898 7 H 0.132 0.868 8 C -0.170 4.170 9 H 0.118 0.882 10 C 0.060 3.940 11 N -0.487 5.487 12 C 0.031 3.969 13 C 0.451 3.549 14 O -0.563 6.563 15 N -0.588 5.588 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.041 3.959 19 N -0.880 5.880 20 Si 0.879 3.121 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.269 1.269 24 C 0.065 3.935 25 C -0.161 4.161 26 H 0.118 0.882 27 C -0.121 4.121 28 C -0.141 4.141 29 C -0.115 4.115 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.401 0.599 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.371 0.629 39 H 0.274 0.726 40 H 0.123 0.877 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.386 -28.411 8.733 29.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.114 4.114 3 C 0.319 3.681 4 O -0.410 6.410 5 N -0.346 5.346 6 C -0.004 4.004 7 H 0.149 0.851 8 C -0.190 4.190 9 H 0.136 0.864 10 C -0.068 4.068 11 N -0.211 5.211 12 C -0.101 4.101 13 C 0.237 3.763 14 O -0.445 6.445 15 N -0.227 5.227 16 C -0.433 4.433 17 H 0.138 0.862 18 C -0.162 4.162 19 N -0.520 5.520 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.063 4.063 25 C -0.182 4.182 26 H 0.135 0.865 27 C -0.159 4.159 28 C -0.178 4.178 29 C -0.152 4.152 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.236 0.764 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.152 -27.829 8.210 29.016 hybrid contribution 1.714 0.102 0.146 1.723 sum 1.562 -27.728 8.356 29.001 Atomic orbital electron populations 1.21609 0.91122 1.02924 1.02876 1.22185 0.97188 0.91131 1.00915 1.20440 0.82049 0.85980 0.79668 1.90704 1.31182 1.80290 1.38818 1.45325 1.41121 1.10585 1.37564 1.21826 0.99141 0.79754 0.99720 0.85069 1.23803 1.02743 0.99621 0.92880 0.86443 1.22687 0.94507 0.88665 1.00957 1.65419 1.25515 1.06293 1.23861 1.22136 0.94254 0.93692 1.00030 1.19584 0.88075 0.83860 0.84795 1.90489 1.15998 1.77142 1.60869 1.42192 1.11266 1.20705 1.48547 1.19427 0.98355 0.98988 1.26554 0.86219 1.25042 0.98447 0.95822 0.96850 1.69618 1.36664 1.11131 1.34589 0.86676 0.85119 0.78806 0.78840 1.19631 1.20130 1.19444 1.22871 1.01206 0.91300 0.90888 1.24117 0.97855 0.94494 1.01726 0.86451 1.22931 1.01409 0.95224 0.96335 1.22831 1.02502 0.96319 0.96155 1.22893 1.02386 0.93902 0.96059 0.91441 0.91095 0.91956 0.76402 0.93666 0.89452 0.93061 0.88832 0.79659 0.91589 0.85916 0.94103 0.89643 0.90543 0.89809 0.90930 0.90834 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.71 8.98 37.16 0.33 -0.38 16 2 C -0.11 -0.84 1.26 -154.85 -0.19 -1.03 16 3 C 0.53 5.87 6.93 -10.99 -0.08 5.79 16 4 O -0.53 -8.20 15.47 5.56 0.09 -8.11 16 5 N -0.70 -6.64 5.45 -53.81 -0.29 -6.93 16 6 C 0.10 1.20 5.98 -67.93 -0.41 0.79 16 7 H 0.13 1.83 7.40 -51.93 -0.38 1.44 16 8 C -0.17 -1.88 7.05 -89.23 -0.63 -2.51 16 9 H 0.12 1.07 8.14 -51.93 -0.42 0.64 16 10 C 0.06 0.74 6.30 -2.18 -0.01 0.73 16 11 N -0.49 -7.93 5.34 -231.40 -1.23 -9.16 16 12 C 0.03 0.52 5.55 -4.98 -0.03 0.50 16 13 C 0.45 10.26 7.50 -10.98 -0.08 10.18 16 14 O -0.56 -14.78 13.24 5.55 0.07 -14.70 16 15 N -0.59 -14.07 5.09 -10.96 -0.06 -14.13 16 16 C -0.30 -8.62 10.16 -14.93 -0.15 -8.78 16 17 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 20 Si 0.88 19.48 27.73 -169.99 -4.71 14.76 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 23 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 24 C 0.06 1.08 5.11 -2.18 -0.01 1.07 16 25 C -0.16 -2.08 7.05 -89.23 -0.63 -2.71 16 26 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 27 C -0.12 -0.72 7.20 -25.92 -0.19 -0.91 16 28 C -0.14 -0.77 7.73 -25.92 -0.20 -0.97 16 29 C -0.11 -0.88 7.00 -25.92 -0.18 -1.06 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.29 7.34 -51.93 -0.38 -0.09 16 32 H 0.06 0.29 7.04 -51.93 -0.37 -0.08 16 33 H 0.40 2.71 7.73 -40.82 -0.32 2.39 16 34 H 0.05 0.54 7.82 -51.93 -0.41 0.14 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.37 7.81 5.77 -40.82 -0.24 7.57 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.12 2.46 6.05 -51.93 -0.31 2.15 16 41 H 0.04 0.71 8.00 -51.93 -0.42 0.29 16 42 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 43 H 0.08 0.34 8.10 -51.93 -0.42 -0.08 16 44 H 0.08 0.36 7.64 -51.93 -0.40 -0.04 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 47 H 0.10 0.91 7.43 -51.93 -0.39 0.52 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -34.06 375.22 -9.62 -43.68 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -7.36 Total: 12.20 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -2.55 Total: 1.75 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.81 Total: -55.23 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.16 Total: -22.82 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.71 Total: 14.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.06 -9.62 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114681587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.873 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds