Wall clock time and date at job start Fri Apr 10 2020 18:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34865 * 119.09882 * 2 1 4 4 C 1.41668 * 119.33527 * 180.24164 * 3 2 1 5 5 O 1.22091 * 121.06660 * 179.72642 * 4 3 2 6 6 C 1.47101 * 117.86567 * 359.74856 * 4 3 2 7 7 C 1.47292 * 120.88220 * 179.97438 * 6 4 3 8 8 O 1.21621 * 119.99779 * 5.77621 * 7 6 4 9 9 N 1.34778 * 119.99679 * 185.76616 * 7 6 4 10 10 C 1.46497 * 119.99435 * 184.87493 * 9 7 6 11 11 H 1.09003 * 109.47779 * 323.29585 * 10 9 7 12 12 C 1.52998 * 109.47100 * 83.29923 * 10 9 7 13 13 C 1.53004 * 109.46966 * 203.29271 * 10 9 7 14 14 C 1.53006 * 109.46747 * 62.77853 * 13 10 9 15 15 H 1.08995 * 109.47276 * 306.43277 * 14 13 10 16 16 C 1.52999 * 109.46888 * 66.43625 * 14 13 10 17 17 N 1.46504 * 109.46668 * 186.43264 * 14 13 10 18 18 C 1.36940 * 119.99279 * 157.18457 * 17 14 13 19 19 H 1.07993 * 120.00427 * 4.93217 * 18 17 14 20 20 C 1.38811 * 119.99705 * 184.93179 * 18 17 14 21 21 N 1.31625 * 120.00180 * 184.36992 * 20 18 17 22 22 Si 1.86803 * 120.00110 * 4.36671 * 20 18 17 23 23 H 1.48494 * 109.47343 * 93.42742 * 22 20 18 24 24 H 1.48502 * 109.46959 * 213.42935 * 22 20 18 25 25 H 1.48506 * 109.47104 * 333.42754 * 22 20 18 26 26 C 1.37988 * 118.23615 * 0.02562 * 6 4 3 27 27 N 1.34346 * 120.36943 * 359.97438 * 26 6 4 28 28 C 1.46500 * 118.80592 * 179.97438 * 27 26 6 29 29 H 1.08998 * 109.47235 * 264.03882 * 1 2 3 30 30 H 1.09007 * 109.46886 * 24.03550 * 1 2 3 31 31 H 1.08994 * 109.47519 * 144.03835 * 1 2 3 32 32 H 1.08003 * 120.33484 * 0.02562 * 3 2 1 33 33 H 0.96993 * 120.00044 * 4.88059 * 9 7 6 34 34 H 1.08999 * 109.47177 * 179.97438 * 12 10 9 35 35 H 1.08999 * 109.46931 * 299.99567 * 12 10 9 36 36 H 1.08996 * 109.47441 * 59.99424 * 12 10 9 37 37 H 1.08998 * 109.46925 * 182.77432 * 13 10 9 38 38 H 1.08996 * 109.47049 * 302.78123 * 13 10 9 39 39 H 1.08997 * 109.47178 * 179.97438 * 16 14 13 40 40 H 1.08997 * 109.47348 * 299.99813 * 16 14 13 41 41 H 1.09001 * 109.47304 * 60.00164 * 16 14 13 42 42 H 0.96995 * 120.00589 * 337.18712 * 17 14 13 43 43 H 0.96993 * 119.99826 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.81611 * 180.02562 * 26 6 4 45 45 H 1.09000 * 109.47522 * 96.53856 * 28 27 26 46 46 H 1.09001 * 109.47092 * 336.54194 * 28 27 26 47 47 H 1.08997 * 109.47123 * 216.53991 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 -0.0052 5 8 4.2053 2.2327 -0.0104 6 6 4.2725 -0.1133 -0.0047 7 6 5.7437 -0.1847 -0.0105 8 8 6.4023 0.8327 0.0902 9 7 6.3599 -1.3777 -0.1272 10 6 7.8190 -1.4613 -0.0259 11 1 8.2666 -0.5836 -0.4921 12 6 8.2253 -1.5190 1.4480 13 6 8.3082 -2.7232 -0.7395 14 6 7.9627 -2.6342 -2.2273 15 1 6.8978 -2.4317 -2.3415 16 6 8.7687 -1.5043 -2.8713 17 7 8.2914 -3.9030 -2.8817 18 6 7.6730 -4.2494 -4.0534 19 1 7.0031 -3.5537 -4.5366 20 6 7.9071 -5.4948 -4.6200 21 7 7.3814 -5.7956 -5.7886 22 14 8.9685 -6.7439 -3.7240 23 1 8.1037 -7.6341 -2.9086 24 1 9.7204 -7.5557 -4.7144 25 1 9.9252 -6.0349 -2.8367 26 6 3.5077 -1.2618 0.0002 27 7 2.1664 -1.1847 0.0050 28 6 1.3880 -2.4257 0.0096 29 1 -0.3633 -0.1067 1.0221 30 1 -0.3633 0.9386 -0.4186 31 1 -0.3634 -0.8317 -0.6034 32 1 1.6137 2.1084 0.0004 33 1 5.8374 -2.1807 -0.2784 34 1 9.3109 -1.5817 1.5234 35 1 7.8768 -0.6200 1.9564 36 1 7.7778 -2.3967 1.9143 37 1 9.3883 -2.8114 -0.6220 38 1 7.8229 -3.5973 -0.3054 39 1 8.5229 -1.4412 -3.9313 40 1 8.5242 -0.5603 -2.3844 41 1 9.8336 -1.7069 -2.7572 42 1 8.9471 -4.4978 -2.4852 43 1 7.5453 -6.6657 -6.1846 44 1 3.9899 -2.2281 0.0011 45 1 1.0994 -2.6699 1.0319 46 1 1.9921 -3.2351 -0.4006 47 1 0.4933 -2.2957 -0.5992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134671702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:50 Heat of formation + Delta-G solvation = -23.932961 kcal Electronic energy + Delta-G solvation = -27510.939862 eV Core-core repulsion = 23694.819031 eV Total energy + Delta-G solvation = -3816.120832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.42796 -39.48441 -37.94557 -36.78434 -34.63824 -33.82549 -32.96519 -32.04487 -30.78166 -29.08510 -28.27488 -27.18100 -26.33171 -24.50190 -23.63206 -22.38223 -21.12278 -20.58082 -19.73762 -18.39166 -17.78030 -17.48843 -16.42900 -16.36894 -15.95508 -15.78021 -14.97533 -14.61875 -14.50027 -14.31719 -13.93100 -13.80605 -13.65619 -13.59312 -13.40610 -13.22658 -13.14716 -12.72818 -12.62689 -12.46283 -12.25445 -12.13631 -12.09560 -11.97272 -11.61285 -11.29752 -10.97687 -10.64852 -10.52019 -10.16786 -9.94302 -9.87988 -9.72331 -9.61584 -9.17419 -8.94286 -8.83425 -8.10870 -7.27155 -5.79676 -3.14639 0.68873 1.11866 2.08051 3.06251 3.28386 3.33373 3.36321 3.42527 3.77755 3.85040 4.14523 4.25206 4.44309 4.54748 4.55921 4.75809 4.81930 4.85855 4.90123 4.95771 5.15151 5.25752 5.29584 5.35885 5.48509 5.49053 5.56162 5.60406 5.69424 5.79484 5.90823 6.01163 6.10627 6.22900 6.27127 6.30735 6.32418 6.48917 6.54032 6.59808 6.73935 6.88058 7.08580 7.71564 7.99656 8.11774 8.40104 8.52518 9.19996 9.92430 10.13512 11.38808 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012375 B = 0.003455 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.092108 B = 8102.494264 C = 9378.299091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 C -0.270 4.270 4 C 0.408 3.592 5 O -0.482 6.482 6 C -0.298 4.298 7 C 0.574 3.426 8 O -0.514 6.514 9 N -0.726 5.726 10 C 0.146 3.854 11 H 0.093 0.907 12 C -0.161 4.161 13 C -0.136 4.136 14 C 0.178 3.822 15 H 0.053 0.947 16 C -0.167 4.167 17 N -0.752 5.752 18 C -0.240 4.240 19 H 0.088 0.912 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.887 3.113 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.278 1.278 26 C 0.176 3.824 27 N -0.471 5.471 28 C 0.047 3.953 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.151 0.849 33 H 0.393 0.607 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.168 0.832 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.745 5.192 17.045 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.294 4.294 4 C 0.294 3.706 5 O -0.363 6.363 6 C -0.309 4.309 7 C 0.361 3.639 8 O -0.389 6.389 9 N -0.379 5.379 10 C 0.041 3.959 11 H 0.111 0.889 12 C -0.220 4.220 13 C -0.174 4.174 14 C 0.069 3.931 15 H 0.071 0.929 16 C -0.227 4.227 17 N -0.395 5.395 18 C -0.370 4.370 19 H 0.106 0.894 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.718 3.282 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.204 1.204 26 C 0.045 3.955 27 N -0.157 5.157 28 C -0.095 4.095 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.169 0.831 33 H 0.228 0.772 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.194 0.806 43 H 0.069 0.931 44 H 0.185 0.815 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.197 6.333 16.922 23.610 hybrid contribution 0.512 -1.675 0.301 1.777 sum -14.685 4.658 17.223 23.108 Atomic orbital electron populations 1.21186 0.88085 1.05134 1.04016 1.20271 0.94868 0.85009 0.94955 1.22279 0.96366 0.97157 1.13599 1.18144 0.88213 0.87911 0.76338 1.90820 1.69943 1.33233 1.42270 1.22559 0.94501 0.95071 1.18759 1.17448 0.86045 0.83541 0.76842 1.90834 1.65824 1.34007 1.48219 1.46018 1.08001 1.08954 1.74933 1.20985 0.79604 0.99852 0.95464 0.88874 1.22175 1.01549 1.01903 0.96339 1.22222 1.01842 0.96376 0.97005 1.20168 0.97504 0.86666 0.88764 0.92920 1.22434 1.00275 0.98300 1.01662 1.42893 1.49533 1.19772 1.27333 1.19065 1.21330 0.99207 0.97360 0.89418 1.24698 1.00108 0.97548 0.96913 1.69716 1.49153 1.22408 1.17012 0.86504 0.80477 0.82162 0.79043 1.21312 1.21873 1.20442 1.22274 0.82164 1.00053 0.91016 1.42564 1.05327 1.07269 1.60574 1.22581 0.98037 0.84440 1.04400 0.89406 0.88885 0.90019 0.83108 0.77245 0.91702 0.92306 0.92729 0.90636 0.91387 0.92629 0.93809 0.93625 0.80563 0.93130 0.81475 0.89962 0.88433 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.38 9.34 36.01 0.34 -0.04 16 2 C 0.15 1.11 6.64 -82.13 -0.54 0.56 16 3 C -0.27 -2.92 9.57 -39.47 -0.38 -3.30 16 4 C 0.41 6.46 6.96 -34.68 -0.24 6.22 16 5 O -0.48 -10.01 16.43 -15.07 -0.25 -10.26 16 6 C -0.30 -4.11 6.05 -102.71 -0.62 -4.73 16 7 C 0.57 9.33 7.70 -12.58 -0.10 9.23 16 8 O -0.51 -10.76 15.26 -14.64 -0.22 -10.98 16 9 N -0.73 -9.61 4.32 -54.92 -0.24 -9.84 16 10 C 0.15 2.01 2.46 -67.93 -0.17 1.84 16 11 H 0.09 1.50 5.92 -51.93 -0.31 1.19 16 12 C -0.16 -1.93 9.46 37.16 0.35 -1.58 16 13 C -0.14 -1.97 4.39 -26.73 -0.12 -2.09 16 14 C 0.18 3.32 2.90 -67.93 -0.20 3.12 16 15 H 0.05 1.01 7.38 -51.93 -0.38 0.63 16 16 C -0.17 -3.13 9.25 37.16 0.34 -2.79 16 17 N -0.75 -17.15 4.92 -53.42 -0.26 -17.42 16 18 C -0.24 -6.58 10.39 -15.06 -0.16 -6.74 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 21 N -0.93 -28.83 13.97 55.49 0.78 -28.06 16 22 Si 0.89 21.57 27.97 -169.99 -4.76 16.82 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.33 6.20 56.52 0.35 -5.98 16 26 C 0.18 1.53 9.77 -16.54 -0.16 1.36 16 27 N -0.47 -3.03 2.97 -119.75 -0.36 -3.39 16 28 C 0.05 0.10 9.98 59.85 0.60 0.70 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.24 7.97 -51.93 -0.41 -0.17 16 31 H 0.08 0.11 6.02 -51.93 -0.31 -0.20 16 32 H 0.15 1.41 8.01 -52.48 -0.42 0.98 16 33 H 0.39 4.19 6.63 -40.82 -0.27 3.92 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.76 6.56 -51.93 -0.34 0.42 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.36 8.11 5.53 -40.82 -0.23 7.88 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.17 0.94 6.36 -52.49 -0.33 0.60 16 45 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 46 H 0.10 0.16 7.85 -51.93 -0.41 -0.25 16 47 H 0.09 0.08 5.96 -51.93 -0.31 -0.23 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -40.42 380.42 -7.86 -48.28 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.14 Total: 7.34 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.15 Total: 1.77 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -0.08 Total: -58.71 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.47 Total: -21.24 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.76 Total: 16.82 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.42 -7.86 -48.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134671702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.348 kcal (2) G-P(sol) polarization free energy of solvation -40.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds