Wall clock time and date at job start Fri Apr 10 2020 18:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 120.00164 * 2 1 4 4 H 1.48504 * 109.47199 * 240.00247 * 3 2 1 5 5 H 1.48504 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47475 * 119.99451 * 3 2 1 7 7 C 1.38950 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00517 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99942 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99999 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99691 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00239 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47237 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46834 * 180.02562 * 15 14 13 17 17 C 1.34776 * 119.99687 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99944 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99848 * 180.02562 * 17 16 15 20 20 H 1.09000 * 115.50764 * 325.35248 * 19 17 16 21 21 C 1.52998 * 117.43262 * 110.61548 * 19 17 16 22 22 H 1.09004 * 119.98434 * 355.25548 * 21 19 17 23 23 C 1.53006 * 117.42818 * 179.97438 * 19 17 16 24 24 H 1.08996 * 119.98882 * 4.73472 * 23 19 17 25 25 C 1.55925 * 117.17206 * 160.66382 * 23 19 17 26 26 H 1.09009 * 115.92119 * 262.23674 * 25 23 19 27 27 C 1.55927 * 104.49793 * 133.35638 * 25 23 19 28 28 C 1.54581 * 104.64366 * 289.71751 * 27 25 23 29 29 C 1.55923 * 117.17716 * 199.33448 * 21 19 17 30 30 H 1.08997 * 115.92411 * 97.75839 * 29 21 19 31 31 C 1.56952 * 100.65579 * 29.29728 * 25 23 19 32 32 H 0.97006 * 119.99813 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00115 * 359.97438 * 9 7 2 34 34 H 1.08998 * 109.47149 * 60.00234 * 12 10 9 35 35 H 1.09001 * 109.46961 * 299.99514 * 12 10 9 36 36 H 1.00902 * 110.99607 * 303.95116 * 13 12 10 37 37 H 1.09001 * 109.46805 * 60.00040 * 14 13 12 38 38 H 1.08995 * 109.47218 * 300.00116 * 14 13 12 39 39 H 1.09001 * 109.46951 * 60.00423 * 15 14 13 40 40 H 1.09001 * 109.47205 * 299.99914 * 15 14 13 41 41 H 0.96994 * 120.00199 * 359.97438 * 16 15 14 42 42 H 1.09002 * 110.40292 * 170.93045 * 27 25 23 43 43 H 1.08993 * 110.40268 * 48.51112 * 27 25 23 44 44 H 1.08991 * 110.40484 * 241.21298 * 28 27 25 45 45 H 1.08998 * 110.40428 * 118.78675 * 28 27 25 46 46 H 1.09004 * 112.02499 * 296.83215 * 31 25 23 47 47 H 1.08998 * 112.02712 * 170.30498 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0026 11 8 3.2102 -3.5579 0.0031 12 6 1.2437 -4.8629 0.0032 13 7 2.1983 -5.9795 0.0050 14 6 1.4980 -7.2708 0.0062 15 6 2.5230 -8.4068 0.0073 16 7 1.8245 -9.6947 0.0079 17 6 2.5293 -10.8434 0.0095 18 8 3.7417 -10.8111 0.0099 19 6 1.8109 -12.1681 0.0095 20 1 0.8750 -12.1946 0.5678 21 6 1.8966 -13.0165 -1.2608 22 1 2.3956 -12.6227 -2.1462 23 6 2.6687 -13.4351 0.0107 24 1 3.7531 -13.3588 0.0895 25 6 1.9837 -14.7584 0.4701 26 1 2.1533 -15.0476 1.5073 27 6 2.3989 -15.8070 -0.6066 28 6 1.6263 -15.3883 -1.8783 29 6 0.8177 -14.1262 -1.4502 30 1 -0.0283 -13.8648 -2.0858 31 6 0.4987 -14.4790 0.0455 32 1 -0.4850 0.8401 -0.0004 33 1 0.3534 -2.3907 0.0024 34 1 0.6174 -4.9212 -0.8870 35 1 0.6167 -4.9200 0.8931 36 1 2.8337 -5.9131 -0.7760 37 1 0.8735 -7.3463 -0.8840 38 1 0.8728 -7.3443 0.8959 39 1 3.1477 -8.3315 0.8973 40 1 3.1479 -8.3333 -0.8827 41 1 0.8549 -9.7205 0.0080 42 1 2.1032 -16.8089 -0.2951 43 1 3.4735 -15.7648 -0.7836 44 1 0.9510 -16.1841 -2.1920 45 1 2.3212 -15.1400 -2.6806 46 1 0.0721 -13.6323 0.5835 47 1 -0.1253 -15.3685 0.1317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152977715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:55 Heat of formation + Delta-G solvation = -36.435336 kcal Electronic energy + Delta-G solvation = -25564.190836 eV Core-core repulsion = 21747.527861 eV Total energy + Delta-G solvation = -3816.662975 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77725 -39.42733 -38.31760 -36.31890 -34.35780 -33.92470 -33.72754 -31.24615 -29.57878 -29.40198 -28.48759 -26.35457 -24.77184 -23.61786 -22.12688 -22.07358 -20.97443 -19.49792 -19.25541 -19.02769 -17.94478 -17.80041 -16.44828 -16.24284 -16.17233 -15.99108 -15.71246 -15.04046 -14.78242 -14.50217 -14.01853 -13.89812 -13.47692 -13.42512 -13.23647 -13.07876 -12.78288 -12.39389 -11.99454 -11.93813 -11.90956 -11.73315 -11.61167 -11.52803 -11.46863 -11.42742 -11.35116 -11.01504 -10.76943 -10.44356 -10.27727 -10.22008 -10.08180 -9.97768 -9.50883 -9.24828 -8.51255 -8.13827 -7.97333 -6.42511 -3.83416 2.24524 2.77983 3.20244 3.25877 3.30584 3.41268 3.85289 3.89512 4.00535 4.04752 4.13436 4.39803 4.52105 4.57049 4.63460 4.67774 4.77746 4.85572 4.87245 4.95006 4.98149 5.02309 5.12870 5.17227 5.25405 5.31410 5.37890 5.48576 5.52544 5.60424 5.66800 5.67027 5.71616 5.76792 5.82673 5.85532 5.90080 5.93236 5.93905 6.19250 6.25989 7.08779 7.28621 7.54495 7.56007 8.03051 8.05082 8.60129 9.16915 9.52834 10.04319 10.75085 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.048165 B = 0.001525 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.192080 B =18350.403201 C =18625.309717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.932 3.068 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.052 3.948 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.120 3.880 16 N -0.724 5.724 17 C 0.543 3.457 18 O -0.537 6.537 19 C -0.167 4.167 20 H 0.125 0.875 21 C -0.137 4.137 22 H 0.116 0.884 23 C -0.127 4.127 24 H 0.124 0.876 25 C -0.074 4.074 26 H 0.102 0.898 27 C -0.118 4.118 28 C -0.118 4.118 29 C -0.073 4.073 30 H 0.102 0.898 31 C -0.137 4.137 32 H 0.272 0.728 33 H 0.392 0.608 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.352 0.648 37 H 0.033 0.967 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.401 0.599 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.963 -31.452 -2.039 31.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.466 6.466 12 C -0.080 4.080 13 N -0.299 5.299 14 C -0.080 4.080 15 C -0.004 4.004 16 N -0.376 5.376 17 C 0.329 3.671 18 O -0.414 6.414 19 C -0.188 4.188 20 H 0.143 0.857 21 C -0.155 4.155 22 H 0.134 0.866 23 C -0.145 4.145 24 H 0.142 0.858 25 C -0.092 4.092 26 H 0.121 0.879 27 C -0.156 4.156 28 C -0.156 4.156 29 C -0.091 4.091 30 H 0.120 0.880 31 C -0.174 4.174 32 H 0.082 0.918 33 H 0.225 0.775 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.172 0.828 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.235 0.765 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.284 -31.224 -1.377 31.426 hybrid contribution -1.068 1.034 -0.897 1.736 sum -4.352 -30.190 -2.274 30.587 Atomic orbital electron populations 1.69604 1.05942 1.28278 1.50503 1.25261 0.95640 0.99731 0.97242 0.85906 0.78754 0.80384 0.79105 1.19911 1.20974 1.19855 1.19672 0.93392 0.82234 1.47744 0.87929 1.41846 1.09186 1.04574 1.64333 1.19774 0.88397 0.84695 0.84649 1.90534 1.13730 1.87018 1.55339 1.21669 0.94218 0.90804 1.01325 1.59930 1.18836 0.99464 1.51664 1.22074 0.95538 0.89390 1.01017 1.21296 0.94976 0.80673 1.03436 1.45822 1.10371 1.05735 1.75657 1.19564 0.87257 0.84479 0.75781 1.90723 1.13908 1.87530 1.49241 1.22331 1.02299 0.90125 1.04086 0.85693 1.23607 1.01534 0.98605 0.91791 0.86587 1.23602 0.98683 0.91353 1.00864 0.85801 1.23198 0.94336 0.93073 0.98621 0.87948 1.22538 1.00371 0.98041 0.94633 1.22529 0.98680 0.96634 0.97731 1.23182 0.96067 0.93226 0.96639 0.87966 1.23751 0.96412 1.01557 0.95702 0.91817 0.77453 0.93708 0.89460 0.82800 0.94918 0.90443 0.90146 0.91383 0.76547 0.91497 0.91404 0.91477 0.91471 0.90544 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.39 7.82 -10.99 -0.09 10.30 16 11 O -0.58 -15.96 15.78 5.55 0.09 -15.87 16 12 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 13 N -0.67 -10.61 6.13 -115.06 -0.70 -11.31 16 14 C 0.05 0.57 5.80 -3.82 -0.02 0.55 16 15 C 0.12 1.40 5.93 -4.04 -0.02 1.38 16 16 N -0.72 -6.91 5.56 -60.29 -0.33 -7.25 16 17 C 0.54 6.16 7.61 -10.99 -0.08 6.08 16 18 O -0.54 -8.42 16.35 5.56 0.09 -8.33 16 19 C -0.17 -1.36 5.40 -91.77 -0.50 -1.85 16 20 H 0.13 0.77 6.00 -51.93 -0.31 0.45 16 21 C -0.14 -1.01 6.20 -88.25 -0.55 -1.56 16 22 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 23 C -0.13 -1.03 5.93 -88.25 -0.52 -1.55 16 24 H 0.12 1.23 7.82 -51.93 -0.41 0.82 16 25 C -0.07 -0.44 5.18 -85.35 -0.44 -0.88 16 26 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 27 C -0.12 -0.64 6.21 -24.34 -0.15 -0.79 16 28 C -0.12 -0.62 6.21 -24.36 -0.15 -0.77 16 29 C -0.07 -0.40 5.17 -85.38 -0.44 -0.84 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 C -0.14 -0.70 6.23 -22.45 -0.14 -0.84 16 32 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.35 5.83 8.43 -39.29 -0.33 5.50 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.40 2.62 8.47 -40.82 -0.35 2.27 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.40 8.04 -51.93 -0.42 -0.02 16 44 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 46 H 0.08 0.37 5.92 -51.93 -0.31 0.07 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 381.85 15.07 5.75 5.75 Total: -1.00 -33.57 381.85 -10.29 -43.86 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -7.44 Total: 13.07 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -3.38 Total: 2.05 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.37 Total: -56.60 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.18 Total: -24.20 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.57 -10.29 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152977715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.423 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds