Wall clock time and date at job start Fri Apr 10 2020 18:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 120.00164 * 2 1 4 4 H 1.48504 * 109.47199 * 240.00247 * 3 2 1 5 5 H 1.48504 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47475 * 119.99451 * 3 2 1 7 7 C 1.38950 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00517 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99942 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99999 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99691 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00239 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47237 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.46834 * 180.02562 * 15 14 13 17 17 C 1.34776 * 119.99687 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99944 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99848 * 180.02562 * 17 16 15 20 20 H 1.09000 * 115.50764 * 325.35248 * 19 17 16 21 21 C 1.52998 * 117.43262 * 110.61548 * 19 17 16 22 22 H 1.09004 * 119.98434 * 355.25548 * 21 19 17 23 23 C 1.53006 * 117.42818 * 179.97438 * 19 17 16 24 24 H 1.08996 * 119.98882 * 4.73472 * 23 19 17 25 25 C 1.55925 * 117.17206 * 160.66382 * 23 19 17 26 26 H 1.09009 * 115.92119 * 262.23674 * 25 23 19 27 27 C 1.55927 * 104.49793 * 133.35638 * 25 23 19 28 28 C 1.54581 * 104.64366 * 289.71751 * 27 25 23 29 29 C 1.55923 * 117.17716 * 199.33448 * 21 19 17 30 30 H 1.08997 * 115.92411 * 97.75839 * 29 21 19 31 31 C 1.56952 * 100.65579 * 29.29728 * 25 23 19 32 32 H 0.97006 * 119.99813 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00115 * 359.97438 * 9 7 2 34 34 H 1.08998 * 109.47149 * 60.00234 * 12 10 9 35 35 H 1.09001 * 109.46961 * 299.99514 * 12 10 9 36 36 H 1.00902 * 110.99607 * 303.95116 * 13 12 10 37 37 H 1.09001 * 109.46805 * 60.00040 * 14 13 12 38 38 H 1.08995 * 109.47218 * 300.00116 * 14 13 12 39 39 H 1.09001 * 109.46951 * 60.00423 * 15 14 13 40 40 H 1.09001 * 109.47205 * 299.99914 * 15 14 13 41 41 H 0.96994 * 120.00199 * 359.97438 * 16 15 14 42 42 H 1.09002 * 110.40292 * 170.93045 * 27 25 23 43 43 H 1.08993 * 110.40268 * 48.51112 * 27 25 23 44 44 H 1.08991 * 110.40484 * 241.21298 * 28 27 25 45 45 H 1.08998 * 110.40428 * 118.78675 * 28 27 25 46 46 H 1.09004 * 112.02499 * 296.83215 * 31 25 23 47 47 H 1.08998 * 112.02712 * 170.30498 * 31 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9972 -3.5579 0.0026 11 8 3.2102 -3.5579 0.0031 12 6 1.2437 -4.8629 0.0032 13 7 2.1983 -5.9795 0.0050 14 6 1.4980 -7.2708 0.0062 15 6 2.5230 -8.4068 0.0073 16 7 1.8245 -9.6947 0.0079 17 6 2.5293 -10.8434 0.0095 18 8 3.7417 -10.8111 0.0099 19 6 1.8109 -12.1681 0.0095 20 1 0.8750 -12.1946 0.5678 21 6 1.8966 -13.0165 -1.2608 22 1 2.3956 -12.6227 -2.1462 23 6 2.6687 -13.4351 0.0107 24 1 3.7531 -13.3588 0.0895 25 6 1.9837 -14.7584 0.4701 26 1 2.1533 -15.0476 1.5073 27 6 2.3989 -15.8070 -0.6066 28 6 1.6263 -15.3883 -1.8783 29 6 0.8177 -14.1262 -1.4502 30 1 -0.0283 -13.8648 -2.0858 31 6 0.4987 -14.4790 0.0455 32 1 -0.4850 0.8401 -0.0004 33 1 0.3534 -2.3907 0.0024 34 1 0.6174 -4.9212 -0.8870 35 1 0.6167 -4.9200 0.8931 36 1 2.8337 -5.9131 -0.7760 37 1 0.8735 -7.3463 -0.8840 38 1 0.8728 -7.3443 0.8959 39 1 3.1477 -8.3315 0.8973 40 1 3.1479 -8.3333 -0.8827 41 1 0.8549 -9.7205 0.0080 42 1 2.1032 -16.8089 -0.2951 43 1 3.4735 -15.7648 -0.7836 44 1 0.9510 -16.1841 -2.1920 45 1 2.3212 -15.1400 -2.6806 46 1 0.0721 -13.6323 0.5835 47 1 -0.1253 -15.3685 0.1317 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001152977715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:54 Heat of formation + Delta-G solvation = -61.169892 kcal Electronic energy + Delta-G solvation = -25565.263407 eV Core-core repulsion = 21747.527861 eV Total energy + Delta-G solvation = -3817.735546 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.34862 -40.35633 -40.10678 -37.50909 -36.00980 -35.22749 -34.50291 -33.27509 -30.72756 -29.86195 -28.93241 -27.85027 -26.09121 -24.84399 -23.08587 -22.59728 -21.74629 -21.10868 -20.07882 -19.91037 -19.53382 -18.62957 -17.75194 -17.26652 -17.13536 -16.87539 -16.60456 -16.40841 -16.08507 -15.93834 -15.39904 -15.27556 -14.87061 -14.45073 -14.07006 -13.92338 -13.82345 -13.52091 -13.32597 -13.24328 -12.93953 -12.62071 -12.48485 -12.44319 -12.42015 -12.41001 -12.17828 -12.12354 -12.02035 -11.81905 -11.51154 -11.23318 -11.02374 -10.77348 -10.58829 -10.37638 -10.18034 -10.02326 -9.40245 -8.47202 -5.96029 1.38443 1.39754 1.41943 1.52625 1.92167 2.04607 2.30024 2.75114 2.97783 3.20078 3.34442 3.52630 3.56225 3.59817 3.83122 3.95365 3.97030 4.04553 4.11499 4.15934 4.27436 4.30962 4.43983 4.44215 4.47688 4.49845 4.57919 4.60468 4.69990 4.86126 4.88307 4.91556 5.03823 5.07385 5.20704 5.23410 5.24101 5.25830 5.32338 5.39213 5.40433 5.50039 5.83203 6.06033 6.29808 6.49220 6.59661 7.12031 7.18782 7.55400 8.11198 8.69760 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.048165 B = 0.001525 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.192080 B =18350.403201 C =18625.309717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.992 3.008 4 H -0.272 1.272 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.338 4.338 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.434 3.566 11 O -0.626 6.626 12 C 0.068 3.932 13 N -0.687 5.687 14 C 0.060 3.940 15 C 0.127 3.873 16 N -0.708 5.708 17 C 0.537 3.463 18 O -0.590 6.590 19 C -0.162 4.162 20 H 0.154 0.846 21 C -0.132 4.132 22 H 0.101 0.899 23 C -0.141 4.141 24 H 0.095 0.905 25 C -0.072 4.072 26 H 0.108 0.892 27 C -0.120 4.120 28 C -0.119 4.119 29 C -0.066 4.066 30 H 0.118 0.882 31 C -0.131 4.131 32 H 0.278 0.722 33 H 0.398 0.602 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.345 0.655 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.419 0.581 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.726 -32.597 -2.051 33.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.095 0.905 9 N -0.208 5.208 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.064 4.064 13 N -0.320 5.320 14 C -0.069 4.069 15 C 0.003 3.997 16 N -0.360 5.360 17 C 0.325 3.675 18 O -0.470 6.470 19 C -0.183 4.183 20 H 0.171 0.829 21 C -0.151 4.151 22 H 0.119 0.881 23 C -0.160 4.160 24 H 0.113 0.887 25 C -0.090 4.090 26 H 0.126 0.874 27 C -0.157 4.157 28 C -0.157 4.157 29 C -0.084 4.084 30 H 0.136 0.864 31 C -0.168 4.168 32 H 0.088 0.912 33 H 0.232 0.768 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.164 0.836 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.257 0.743 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.101 0.899 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.125 -32.386 -1.387 32.989 hybrid contribution -0.151 1.338 -0.906 1.623 sum -6.277 -31.048 -2.292 31.759 Atomic orbital electron populations 1.69657 1.06745 1.29394 1.50078 1.26013 0.96555 1.02320 0.96157 0.85001 0.77789 0.76719 0.78890 1.19768 1.19332 1.19852 1.19638 0.92725 0.84145 1.50241 0.90452 1.41904 1.09364 1.04628 1.64944 1.20937 0.88269 0.86314 0.82298 1.90503 1.16053 1.87991 1.56735 1.21527 0.93722 0.87480 1.03653 1.59898 1.19389 1.00907 1.51806 1.22058 0.95146 0.86716 1.02979 1.21058 0.95065 0.81939 1.01677 1.45646 1.11242 1.04550 1.74551 1.20204 0.86816 0.85883 0.74630 1.90702 1.16331 1.88307 1.51681 1.22321 1.02776 0.88100 1.05073 0.82896 1.23670 1.02035 0.98537 0.90833 0.88103 1.23617 0.97542 0.92679 1.02147 0.88695 1.23253 0.95008 0.91677 0.99063 0.87352 1.22561 0.99750 0.98653 0.94748 1.22554 0.98762 0.97062 0.97297 1.23255 0.95700 0.91999 0.97465 0.86421 1.23760 0.95570 1.02462 0.94983 0.91238 0.76821 0.90861 0.87225 0.83609 0.92394 0.88679 0.92507 0.92813 0.74318 0.90125 0.92682 0.89953 0.92408 0.89890 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 3 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.34 -19.28 9.68 84.04 0.81 -18.46 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -29.15 5.29 -306.99 -1.62 -30.77 16 10 C 0.43 20.60 7.82 87.66 0.69 21.28 16 11 O -0.63 -35.21 15.78 -3.06 -0.05 -35.26 16 12 C 0.07 2.23 6.17 85.56 0.53 2.76 16 13 N -0.69 -21.11 6.13 -517.94 -3.17 -24.28 16 14 C 0.06 1.23 5.80 86.30 0.50 1.74 16 15 C 0.13 2.92 5.93 86.38 0.51 3.43 16 16 N -0.71 -12.64 5.56 -463.05 -2.57 -15.21 16 17 C 0.54 12.19 7.61 87.66 0.67 12.86 16 18 O -0.59 -19.49 16.35 -3.03 -0.05 -19.54 16 19 C -0.16 -2.45 5.40 -11.54 -0.06 -2.52 16 20 H 0.15 1.43 6.00 -2.39 -0.01 1.41 16 21 C -0.13 -1.85 6.20 -9.26 -0.06 -1.91 16 22 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 23 C -0.14 -2.30 5.93 -9.26 -0.05 -2.35 16 24 H 0.09 2.09 7.82 -2.39 -0.02 2.07 16 25 C -0.07 -0.75 5.18 -7.38 -0.04 -0.79 16 26 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 27 C -0.12 -1.15 6.21 32.15 0.20 -0.95 16 28 C -0.12 -1.04 6.21 32.13 0.20 -0.84 16 29 C -0.07 -0.56 5.17 -7.40 -0.04 -0.60 16 30 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 31 C -0.13 -0.93 6.23 33.37 0.21 -0.72 16 32 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 33 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 34 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.35 11.41 8.43 -89.69 -0.76 10.65 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 41 H 0.42 4.31 8.47 -92.71 -0.79 3.53 16 42 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.05 0.66 8.04 -2.39 -0.02 0.64 16 44 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.06 0.61 8.04 -2.39 -0.02 0.59 16 46 H 0.08 0.50 5.92 -2.38 -0.01 0.49 16 47 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -75.44 381.85 -1.89 -77.33 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -1.26 Total: 38.73 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 4.53 Total: 12.84 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -7.09 Total: -119.09 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.10 Total: -54.80 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -75.44 -1.89 -77.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152977715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.160 kcal (2) G-P(sol) polarization free energy of solvation -75.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds