Wall clock time and date at job start Fri Apr 10 2020 18:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 119.99902 * 2 1 4 4 H 1.48510 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47588 * 300.00409 * 3 2 1 6 6 H 1.48502 * 109.47132 * 60.01033 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00164 * 164.46954 * 7 2 1 9 9 N 1.36940 * 119.99874 * 344.47015 * 7 2 1 10 10 C 1.47102 * 121.51360 * 336.18990 * 9 7 2 11 11 C 1.50323 * 109.11127 * 223.15765 * 10 9 7 12 12 C 1.29454 * 123.64590 * 348.54347 * 11 10 9 13 13 C 1.50712 * 117.69203 * 181.13493 * 12 11 10 14 14 C 1.52997 * 109.46805 * 95.00070 * 13 12 11 15 15 N 1.46498 * 109.47047 * 180.02562 * 14 13 12 16 16 C 1.34776 * 120.00238 * 180.02562 * 15 14 13 17 17 O 1.21348 * 119.99973 * 359.97438 * 16 15 14 18 18 C 1.49451 * 120.00260 * 179.97438 * 16 15 14 19 19 O 1.21348 * 119.99767 * 359.97438 * 18 16 15 20 20 N 1.34775 * 120.00209 * 179.97438 * 18 16 15 21 21 C 1.46495 * 119.99754 * 179.97438 * 20 18 16 22 22 C 1.53005 * 109.47045 * 180.02562 * 21 20 18 23 23 C 1.53000 * 117.49977 * 243.62427 * 22 21 20 24 24 C 1.52993 * 117.50224 * 174.99999 * 22 21 20 25 25 C 1.49973 * 124.61570 * 1.15603 * 12 11 10 26 26 C 1.47346 * 121.37425 * 155.99561 * 9 7 2 27 27 H 0.97000 * 119.99856 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.71963 * 103.17316 * 10 9 7 29 29 H 1.08999 * 109.38663 * 342.94970 * 10 9 7 30 30 H 1.07997 * 118.17984 * 168.81447 * 11 10 9 31 31 H 1.08996 * 109.46609 * 214.99616 * 13 12 11 32 32 H 1.08994 * 109.47059 * 334.99790 * 13 12 11 33 33 H 1.09003 * 109.47055 * 300.00087 * 14 13 12 34 34 H 1.08994 * 109.47540 * 60.00015 * 14 13 12 35 35 H 0.97000 * 119.99647 * 359.97438 * 15 14 13 36 36 H 0.97001 * 119.99825 * 0.02562 * 20 18 16 37 37 H 1.08998 * 109.47387 * 299.99545 * 21 20 18 38 38 H 1.09002 * 109.47385 * 60.00249 * 21 20 18 39 39 H 1.09002 * 115.54668 * 29.32907 * 22 21 20 40 40 H 1.09001 * 117.49521 * 359.97438 * 23 22 21 41 41 H 1.08998 * 117.49848 * 145.01653 * 23 22 21 42 42 H 1.09002 * 117.50100 * 214.97828 * 24 22 21 43 43 H 1.09002 * 117.49899 * 359.97438 * 24 22 21 44 44 H 1.09000 * 109.31396 * 101.26707 * 25 12 11 45 45 H 1.08999 * 109.31466 * 220.69797 * 25 12 11 46 46 H 1.08999 * 109.77792 * 358.61675 * 26 9 7 47 47 H 1.08997 * 109.77697 * 237.81310 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0607 -1.2191 -0.2510 9 7 1.3630 -2.3666 0.3165 10 6 0.1415 -2.3687 1.1361 11 6 0.2255 -3.4830 2.1416 12 6 1.1209 -4.4172 2.1038 13 6 1.0646 -5.4846 3.1663 14 6 0.2871 -6.6911 2.6365 15 7 0.2318 -7.7284 3.6694 16 6 -0.4067 -8.8898 3.4247 17 8 -0.9363 -9.0761 2.3489 18 6 -0.4626 -9.9483 4.4783 19 8 0.0674 -9.7622 5.5540 20 7 -1.1016 -11.1095 4.2338 21 6 -1.1558 -12.1472 5.2664 22 6 -1.9330 -13.3539 4.7365 23 6 -3.2406 -13.7177 5.4428 24 6 -2.0016 -14.5964 5.6266 25 6 2.2104 -4.5120 1.0777 26 6 1.8588 -3.6722 -0.1532 27 1 -0.4850 0.8401 0.0004 28 1 -0.7294 -2.5189 0.4980 29 1 0.0530 -1.4148 1.6561 30 1 -0.5043 -3.5080 2.9373 31 1 2.0775 -5.7912 3.4272 32 1 0.5650 -5.0904 4.0512 33 1 -0.7259 -6.3844 2.3755 34 1 0.7866 -7.0852 1.7516 35 1 0.6555 -7.5796 4.5292 36 1 -1.5249 -11.2583 3.3738 37 1 -0.1428 -12.4539 5.5269 38 1 -1.6551 -11.7532 6.1517 39 1 -1.8827 -13.5090 3.6587 40 1 -3.5468 -13.0975 6.2853 41 1 -4.0509 -14.1121 4.8297 42 1 -1.9969 -15.5690 5.1344 43 1 -1.4927 -14.5544 6.5896 44 1 3.1435 -4.1481 1.5079 45 1 2.3357 -5.5531 0.7800 46 1 2.7472 -3.5297 -0.7685 47 1 1.0843 -4.1739 -0.7331 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161579459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:09 Heat of formation + Delta-G solvation = -12.706479 kcal Electronic energy + Delta-G solvation = -25790.901769 eV Core-core repulsion = 21975.267754 eV Total energy + Delta-G solvation = -3815.634015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86775 -39.02310 -37.99517 -37.84252 -35.76349 -34.60132 -33.52800 -31.41409 -29.88856 -29.01209 -28.13681 -25.69952 -24.07014 -22.95074 -22.83314 -22.30845 -21.58075 -21.00933 -20.40411 -18.70133 -17.61281 -17.26589 -16.56487 -16.31930 -15.96780 -15.51512 -15.28418 -15.05376 -14.84064 -14.54766 -14.10984 -14.03369 -13.90670 -13.59230 -13.43387 -13.20201 -12.64944 -12.24538 -12.08368 -12.07346 -12.02342 -11.90278 -11.60496 -11.42902 -11.05683 -11.02735 -10.90627 -10.79589 -10.73367 -10.28139 -10.26670 -9.86491 -9.79751 -9.61485 -9.53465 -9.34160 -8.65176 -7.92911 -6.72034 -5.77845 -3.16380 1.18386 2.06009 2.89966 2.98115 3.16199 3.38432 3.45089 3.46013 3.48182 4.04061 4.21485 4.32898 4.42146 4.50734 4.64002 5.03860 5.06730 5.08641 5.11231 5.16279 5.25340 5.34427 5.40688 5.53922 5.54291 5.56080 5.61276 5.74737 5.83312 5.96444 5.97640 6.10460 6.17324 6.22143 6.39911 6.56180 6.67267 6.79465 6.91243 7.10810 7.23608 7.33199 7.40750 7.48113 7.76363 7.76756 7.88589 8.40050 9.21532 9.84429 10.43204 11.32604 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.044471 B = 0.001711 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.465835 B =16356.180636 C =16410.818544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.195 3.805 11 C -0.144 4.144 12 C -0.143 4.143 13 C -0.093 4.093 14 C 0.121 3.879 15 N -0.696 5.696 16 C 0.504 3.496 17 O -0.520 6.520 18 C 0.508 3.492 19 O -0.521 6.521 20 N -0.700 5.700 21 C 0.149 3.851 22 C -0.175 4.175 23 C -0.176 4.176 24 C -0.168 4.168 25 C -0.091 4.091 26 C 0.142 3.858 27 H 0.253 0.747 28 H 0.039 0.961 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.412 0.588 36 H 0.414 0.586 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.536 -26.333 11.416 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.319 5.319 10 C 0.070 3.930 11 C -0.164 4.164 12 C -0.144 4.144 13 C -0.131 4.131 14 C -0.001 4.001 15 N -0.349 5.349 16 C 0.284 3.716 17 O -0.396 6.396 18 C 0.289 3.711 19 O -0.397 6.397 20 N -0.353 5.353 21 C 0.026 3.974 22 C -0.193 4.193 23 C -0.213 4.213 24 C -0.206 4.206 25 C -0.130 4.130 26 C 0.016 3.984 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.621 -26.155 11.401 28.760 hybrid contribution 0.304 0.830 0.088 0.888 sum -3.317 -25.325 11.489 28.006 Atomic orbital electron populations 1.70026 1.05171 1.25336 1.54966 1.24986 0.95391 0.98271 1.01364 0.86187 0.79238 0.83922 0.77231 1.20323 1.21776 1.21630 1.19234 0.92247 0.84366 1.41499 0.91323 1.44170 1.29069 1.01146 1.57471 1.19733 0.88584 0.94876 0.89766 1.23139 0.96609 0.97298 0.99355 1.20211 0.99445 0.96576 0.98191 1.20926 1.00174 0.93916 0.98054 1.21632 1.01823 0.86468 0.90176 1.45921 1.54232 1.15372 1.19361 1.20010 0.80353 0.83579 0.87708 1.90786 1.44689 1.79391 1.24772 1.20241 0.79545 0.83431 0.87906 1.90770 1.44553 1.79428 1.24922 1.45739 1.55147 1.15345 1.19111 1.21017 1.00715 0.85457 0.90247 1.22459 1.01157 0.96331 0.99361 1.23119 0.91546 1.03535 1.03063 1.22970 1.01768 0.94637 1.01218 1.20764 0.96635 0.98994 0.96641 1.20958 0.97352 0.87258 0.92853 0.93695 0.94367 0.89083 0.89009 0.91181 0.91260 0.90609 0.90592 0.75229 0.74895 0.90423 0.90670 0.86829 0.88373 0.88395 0.88259 0.88305 0.91887 0.92878 0.92538 0.95859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.39 11.07 55.49 0.61 -25.77 16 2 C 0.00 -0.07 5.01 -17.43 -0.09 -0.15 16 3 Si 0.90 21.79 29.58 -169.99 -5.03 16.76 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.73 9.71 -15.06 -0.15 -6.87 16 8 H 0.07 1.85 7.88 -52.48 -0.41 1.44 16 9 N -0.60 -15.03 3.01 -173.59 -0.52 -15.56 16 10 C 0.20 4.69 5.25 -5.05 -0.03 4.66 16 11 C -0.14 -2.76 9.47 -35.78 -0.34 -3.10 16 12 C -0.14 -2.43 5.11 -100.98 -0.52 -2.95 16 13 C -0.09 -1.19 5.32 -27.88 -0.15 -1.34 16 14 C 0.12 1.51 5.66 -4.04 -0.02 1.49 16 15 N -0.70 -7.79 5.55 -60.73 -0.34 -8.13 16 16 C 0.50 6.07 7.89 -11.58 -0.09 5.98 16 17 O -0.52 -7.44 16.48 5.50 0.09 -7.35 16 18 C 0.51 5.50 7.89 -11.59 -0.09 5.41 16 19 O -0.52 -6.61 16.48 5.50 0.09 -6.52 16 20 N -0.70 -5.73 5.55 -60.73 -0.34 -6.07 16 21 C 0.15 0.98 5.96 -4.04 -0.02 0.95 16 22 C -0.17 -0.85 5.85 -90.62 -0.53 -1.38 16 23 C -0.18 -0.78 10.18 -26.73 -0.27 -1.05 16 24 C -0.17 -0.68 10.25 -26.74 -0.27 -0.96 16 25 C -0.09 -1.59 5.95 -28.18 -0.17 -1.76 16 26 C 0.14 2.99 6.57 -3.53 -0.02 2.97 16 27 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 28 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 29 H 0.09 2.43 6.40 -51.93 -0.33 2.09 16 30 H 0.09 1.55 7.73 -52.49 -0.41 1.15 16 31 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 32 H 0.07 0.84 7.78 -51.93 -0.40 0.43 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 35 H 0.41 4.01 7.94 -40.82 -0.32 3.69 16 36 H 0.41 2.99 7.87 -40.82 -0.32 2.66 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 39 H 0.11 0.50 8.04 -51.93 -0.42 0.08 16 40 H 0.10 0.43 8.03 -51.93 -0.42 0.01 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 46 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -31.97 390.33 -9.94 -41.91 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.64 Total: 2.95 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.76 Total: 1.90 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.58 Total: -55.53 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.18 Total: -13.87 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.97 -9.94 -41.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161579459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.203 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds