Wall clock time and date at job start Fri Apr 10 2020 18:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 119.99929 * 2 1 4 4 H 1.48505 * 109.46872 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47068 * 299.99840 * 3 2 1 6 6 H 1.48494 * 109.47018 * 59.99965 * 3 2 1 7 7 C 1.38952 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00303 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00081 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00062 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00079 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47348 * 180.02562 * 12 10 9 14 14 C 1.46893 * 111.00201 * 179.97438 * 13 12 10 15 15 H 1.09005 * 110.64050 * 31.85929 * 14 13 12 16 16 C 1.55439 * 110.71186 * 268.54677 * 14 13 12 17 17 C 1.54910 * 101.45527 * 206.14762 * 16 14 13 18 18 N 1.47429 * 104.92784 * 36.99788 * 17 16 14 19 19 C 1.34776 * 125.64602 * 155.83876 * 18 17 16 20 20 O 1.21283 * 119.99871 * 353.09163 * 19 18 17 21 21 C 1.50695 * 119.99997 * 173.08541 * 19 18 17 22 22 C 1.53005 * 115.55049 * 179.89078 * 21 19 18 23 23 C 1.53000 * 117.49745 * 34.33483 * 22 21 19 24 24 C 1.52997 * 117.50014 * 325.67445 * 22 21 19 25 25 C 1.53002 * 117.49751 * 34.18561 * 21 19 18 26 26 C 1.52999 * 117.49771 * 325.56196 * 21 19 18 27 27 C 1.47015 * 108.70437 * 335.82422 * 18 17 16 28 28 H 0.97006 * 119.99784 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99582 * 0.02562 * 9 7 2 30 30 H 1.08991 * 109.47234 * 59.99739 * 12 10 9 31 31 H 1.09005 * 109.46826 * 299.99420 * 12 10 9 32 32 H 1.00901 * 110.99840 * 56.03686 * 13 12 10 33 33 H 1.08998 * 111.12045 * 88.08846 * 16 14 13 34 34 H 1.09001 * 111.01116 * 324.15240 * 16 14 13 35 35 H 1.09001 * 110.36081 * 278.11146 * 17 16 14 36 36 H 1.09001 * 110.37101 * 155.89599 * 17 16 14 37 37 H 1.09007 * 115.54638 * 179.97438 * 22 21 19 38 38 H 1.08997 * 117.49825 * 359.97438 * 23 22 21 39 39 H 1.08995 * 117.50035 * 145.02311 * 23 22 21 40 40 H 1.08993 * 117.49620 * 214.98378 * 24 22 21 41 41 H 1.09003 * 117.49462 * 359.97438 * 24 22 21 42 42 H 1.09002 * 117.49960 * 359.97438 * 25 21 19 43 43 H 1.09002 * 117.49973 * 145.02151 * 25 21 19 44 44 H 1.09003 * 117.49907 * 214.97751 * 26 21 19 45 45 H 1.09002 * 117.50062 * 359.97438 * 26 21 19 46 46 H 1.08993 * 109.88643 * 120.47613 * 27 18 17 47 47 H 1.09008 * 109.88055 * 241.64210 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0026 11 8 3.2101 -3.5579 0.0031 12 6 1.2436 -4.8630 0.0032 13 7 2.1982 -5.9796 0.0050 14 6 1.4979 -7.2708 0.0062 15 1 0.5533 -7.1962 -0.5327 16 6 1.2676 -7.7699 1.4601 17 6 1.1917 -9.3029 1.2508 18 7 2.1815 -9.5918 0.1970 19 6 2.7951 -10.7753 -0.0011 20 8 2.6434 -11.6777 0.7948 21 6 3.6697 -10.9772 -1.2116 22 6 4.3180 -12.3577 -1.3345 23 6 3.5177 -13.5612 -0.8324 24 6 4.7291 -13.0628 -0.0404 25 6 4.4692 -9.7735 -1.7143 26 6 3.2585 -10.2722 -2.5057 27 6 2.3878 -8.3752 -0.6022 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3906 0.0016 30 1 0.6173 -4.9213 -0.8869 31 1 0.6167 -4.9201 0.8931 32 1 2.8325 -5.9117 0.7867 33 1 0.3318 -7.3840 1.8643 34 1 2.1075 -7.5044 2.1021 35 1 0.1932 -9.5920 0.9229 36 1 1.4540 -9.8250 2.1710 37 1 4.9502 -12.5038 -2.2103 38 1 2.5296 -13.3694 -0.4143 39 1 3.6241 -14.4991 -1.3774 40 1 5.6319 -13.6729 -0.0647 41 1 4.5380 -12.5430 0.8985 42 1 4.3624 -8.8354 -1.1696 43 1 5.4575 -9.9648 -2.1325 44 1 3.4502 -10.7916 -3.4447 45 1 2.3552 -9.6626 -2.4817 46 1 3.4346 -8.0748 -0.5566 47 1 2.0970 -8.5576 -1.6368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183488179.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:58 Heat of formation + Delta-G solvation = 15.401611 kcal Electronic energy + Delta-G solvation = -27060.211855 eV Core-core repulsion = 23245.796699 eV Total energy + Delta-G solvation = -3814.415157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.12211 -38.83903 -38.03035 -37.20185 -35.79385 -34.48670 -33.78393 -31.29852 -30.62412 -29.06692 -26.43363 -25.28938 -23.90263 -23.33085 -23.10880 -22.22700 -21.44288 -21.05366 -19.38442 -19.29575 -17.97648 -16.96101 -16.54269 -16.25170 -15.61413 -15.40852 -15.32049 -14.82565 -14.56813 -14.48949 -14.12291 -13.94785 -13.85137 -13.60079 -13.33419 -12.89619 -12.63892 -12.56379 -12.28457 -12.10684 -11.72005 -11.65160 -11.58945 -11.47294 -11.31980 -11.26002 -11.08889 -11.05747 -10.81211 -10.37698 -10.29932 -10.26676 -9.71764 -9.64292 -9.56755 -8.77054 -8.55491 -8.17559 -8.01343 -6.46451 -3.87345 2.22155 2.68660 3.13214 3.24356 3.31336 3.40538 3.83567 3.88055 3.99281 4.08480 4.16149 4.24010 4.34912 4.49237 4.67407 4.70425 4.85017 4.90342 4.92936 5.01491 5.07385 5.11661 5.13132 5.21685 5.30262 5.35423 5.49650 5.54168 5.58633 5.62559 5.64607 5.70677 5.75649 5.82224 5.85795 5.89931 5.92354 6.10182 6.12186 6.20219 6.23939 7.05600 7.28725 7.48615 7.51204 7.96546 8.01351 8.55587 9.13168 9.48844 9.99676 10.71190 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.002173 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.272231 B =12884.569501 C =13351.792936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.583 6.583 12 C 0.051 3.949 13 N -0.658 5.658 14 C 0.077 3.923 15 H 0.095 0.905 16 C -0.167 4.167 17 C 0.110 3.890 18 N -0.618 5.618 19 C 0.568 3.432 20 O -0.534 6.534 21 C -0.125 4.125 22 C -0.115 4.115 23 C -0.169 4.169 24 C -0.168 4.168 25 C -0.171 4.171 26 C -0.162 4.162 27 C 0.085 3.915 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.354 0.646 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -21.638 -2.392 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.468 6.468 12 C -0.081 4.081 13 N -0.289 5.289 14 C -0.034 4.034 15 H 0.113 0.887 16 C -0.207 4.207 17 C -0.013 4.013 18 N -0.352 5.352 19 C 0.357 3.643 20 O -0.411 6.411 21 C -0.128 4.128 22 C -0.133 4.133 23 C -0.206 4.206 24 C -0.205 4.205 25 C -0.207 4.207 26 C -0.199 4.199 27 C -0.037 4.037 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.175 0.825 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.140 0.860 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.130 0.870 46 H 0.111 0.889 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.152 -21.994 -2.660 22.259 hybrid contribution -0.635 0.887 0.849 1.382 sum 1.518 -21.108 -1.811 21.240 Atomic orbital electron populations 1.69619 1.05948 1.28117 1.50541 1.25276 0.95650 0.99782 0.97269 0.85795 0.79726 0.81081 0.77728 1.19189 1.20711 1.20766 1.19751 0.93405 0.82176 1.47538 0.87833 1.41867 1.09220 1.04629 1.64198 1.19771 0.88385 0.84689 0.84688 1.90532 1.13720 1.87037 1.55480 1.21704 0.94279 0.90751 1.01368 1.59988 1.18438 0.99116 1.51402 1.22702 0.96827 0.89529 0.94375 0.88724 1.23643 1.03573 0.94867 0.98619 1.22144 0.91954 0.95503 0.91659 1.48396 1.43100 1.10689 1.33055 1.19169 0.78883 0.80559 0.85664 1.90639 1.63040 1.41141 1.46294 1.20873 1.03057 0.94579 0.94342 1.21375 1.03492 0.89455 0.98992 1.23044 0.98021 0.96212 1.03286 1.23040 0.98114 1.03184 0.96166 1.23698 0.96817 0.97481 1.02701 1.23407 1.00009 1.02509 0.93966 1.22834 1.01748 0.83603 0.95535 0.91885 0.77453 0.89412 0.93608 0.82545 0.89529 0.90142 0.91328 0.90329 0.87269 0.87542 0.89619 0.89580 0.87528 0.85965 0.87668 0.87707 0.86988 0.88861 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.97 13.05 55.50 0.72 -23.25 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -13.71 5.29 -10.96 -0.06 -13.77 16 10 C 0.44 9.81 7.82 -10.99 -0.09 9.72 16 11 O -0.58 -15.15 15.78 5.55 0.09 -15.07 16 12 C 0.05 0.81 6.03 -4.97 -0.03 0.78 16 13 N -0.66 -9.18 5.93 -105.89 -0.63 -9.81 16 14 C 0.08 0.80 3.28 -65.72 -0.22 0.58 16 15 H 0.09 0.90 7.82 -51.93 -0.41 0.49 16 16 C -0.17 -1.56 6.69 -24.43 -0.16 -1.72 16 17 C 0.11 1.08 6.93 -2.53 -0.02 1.06 16 18 N -0.62 -6.57 3.32 -170.52 -0.57 -7.14 16 19 C 0.57 6.88 7.32 -10.99 -0.08 6.80 16 20 O -0.53 -7.79 12.06 5.55 0.07 -7.72 16 21 C -0.13 -1.25 2.47 -155.66 -0.38 -1.64 16 22 C -0.11 -1.11 5.85 -90.62 -0.53 -1.64 16 23 C -0.17 -1.74 9.66 -26.69 -0.26 -2.00 16 24 C -0.17 -1.77 9.66 -26.70 -0.26 -2.02 16 25 C -0.17 -1.47 9.34 -26.73 -0.25 -1.72 16 26 C -0.16 -1.31 9.30 -26.73 -0.25 -1.56 16 27 C 0.09 0.83 4.85 -3.06 -0.01 0.81 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.39 9.11 7.90 -40.82 -0.32 8.79 16 30 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.35 5.25 7.91 -39.29 -0.31 4.94 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.81 7.77 -51.93 -0.40 0.40 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.83 7.97 -51.93 -0.41 0.42 16 37 H 0.11 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.11 1.31 6.27 -51.93 -0.33 0.98 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.11 1.35 6.28 -51.93 -0.33 1.02 16 42 H 0.12 1.12 4.34 -51.93 -0.23 0.89 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.11 0.88 5.04 -51.93 -0.26 0.62 16 46 H 0.09 0.97 5.12 -51.93 -0.27 0.70 16 47 H 0.09 0.75 4.88 -51.92 -0.25 0.50 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -31.37 370.68 -9.42 -40.79 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -6.83 Total: 15.10 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.78 Total: -0.34 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.53 Total: -53.96 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.15 Total: -22.79 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.37 -9.42 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183488179.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.191 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds