Wall clock time and date at job start Fri Apr 10 2020 18:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99859 * 2 1 4 4 H 1.48502 * 109.46903 * 269.99862 * 3 2 1 5 5 H 1.48500 * 109.47480 * 29.99631 * 3 2 1 6 6 H 1.48503 * 109.47380 * 150.00087 * 3 2 1 7 7 C 1.37879 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00088 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47043 * 179.97438 * 9 7 2 11 11 C 1.48654 * 111.00128 * 290.12549 * 10 9 7 12 12 C 1.54634 * 104.63377 * 201.48872 * 11 10 9 13 13 C 1.53259 * 104.67532 * 23.69240 * 12 11 10 14 14 C 1.53620 * 111.06020 * 238.99656 * 13 12 11 15 15 C 1.54882 * 101.42915 * 214.76731 * 14 13 12 16 16 N 1.46886 * 105.43286 * 24.87382 * 15 14 13 17 17 C 1.46495 * 124.37650 * 163.05190 * 16 15 14 18 18 C 1.52999 * 109.46943 * 269.72581 * 17 16 15 19 19 H 1.09000 * 110.28936 * 63.02214 * 18 17 16 20 20 C 1.54481 * 110.24698 * 184.99738 * 18 17 16 21 21 C 1.54625 * 101.79703 * 93.59872 * 20 18 17 22 22 C 1.51287 * 104.19667 * 24.78286 * 21 20 18 23 23 O 1.21279 * 124.93807 * 163.71022 * 22 21 20 24 24 N 1.34414 * 110.11346 * 343.74448 * 22 21 20 25 25 C 1.34758 * 111.25190 * 342.78026 * 16 15 14 26 26 O 1.21277 * 125.13275 * 181.27051 * 25 16 15 27 27 C 1.48805 * 110.99905 * 174.51068 * 10 9 7 28 28 H 0.96993 * 120.00473 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46741 * 59.99589 * 9 7 2 30 30 H 1.08993 * 109.46922 * 299.99816 * 9 7 2 31 31 H 1.09004 * 110.40562 * 82.69643 * 11 10 9 32 32 H 1.09005 * 110.50259 * 320.32946 * 11 10 9 33 33 H 1.08995 * 110.40082 * 264.89232 * 12 11 10 34 34 H 1.08998 * 110.40018 * 142.48683 * 12 11 10 35 35 H 1.09003 * 111.01806 * 333.03946 * 14 13 12 36 36 H 1.08998 * 111.01546 * 96.88813 * 14 13 12 37 37 H 1.08997 * 110.38986 * 265.83446 * 15 14 13 38 38 H 1.08999 * 110.17204 * 143.79502 * 15 14 13 39 39 H 1.08994 * 109.47629 * 149.72319 * 17 16 15 40 40 H 1.09009 * 109.46881 * 29.71788 * 17 16 15 41 41 H 1.09002 * 110.96936 * 335.46284 * 20 18 17 42 42 H 1.09003 * 110.97019 * 211.73907 * 20 18 17 43 43 H 1.09010 * 110.48568 * 143.45878 * 21 20 18 44 44 H 1.09001 * 110.49203 * 266.09928 * 21 20 18 45 45 H 0.96996 * 124.34684 * 179.59158 * 24 22 21 46 46 H 1.08999 * 110.45585 * 39.47253 * 27 10 9 47 47 H 1.09004 * 110.45131 * 276.90758 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9149 -3.7103 -1.3025 12 6 3.4242 -5.1690 -1.3651 13 6 2.4920 -5.9463 -0.4293 14 6 3.2829 -6.6240 0.6998 15 6 2.4768 -7.9317 0.8972 16 7 1.8063 -8.1751 -0.3868 17 6 1.2275 -9.4599 -0.7873 18 6 2.2849 -10.2899 -1.5179 19 1 3.1152 -10.5174 -0.8494 20 6 1.6604 -11.5956 -2.0580 21 6 1.2722 -11.1883 -3.4982 22 6 2.2114 -10.0489 -3.8275 23 8 2.4309 -9.6304 -4.9444 24 7 2.7678 -9.5685 -2.7021 25 6 1.7871 -7.0622 -1.1466 26 8 1.2778 -6.9749 -2.2437 27 6 1.5012 -4.9197 0.1334 28 1 -0.4850 0.8399 0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 3.7527 -3.0136 -1.3307 32 1 2.2287 -3.5117 -2.1259 33 1 4.4533 -5.2276 -1.0107 34 1 3.3492 -5.5544 -2.3819 35 1 4.3063 -6.8341 0.3888 36 1 3.2685 -6.0178 1.6056 37 1 1.7392 -7.8071 1.6900 38 1 3.1496 -8.7560 1.1333 39 1 0.3802 -9.2859 -1.4504 40 1 0.8911 -9.9987 0.0986 41 1 0.7790 -11.8744 -1.4804 42 1 2.3915 -12.4040 -2.0648 43 1 1.4268 -12.0207 -4.1849 44 1 0.2363 -10.8510 -3.5333 45 1 3.4067 -8.8392 -2.6756 46 1 0.5816 -4.9172 -0.4518 47 1 1.2868 -5.1317 1.1809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:59 Heat of formation + Delta-G solvation = -58.346869 kcal Electronic energy + Delta-G solvation = -28208.966133 eV Core-core repulsion = 24391.353002 eV Total energy + Delta-G solvation = -3817.613131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26437 -40.28329 -37.67100 -36.87554 -36.11170 -33.47655 -32.17086 -31.58515 -30.19145 -28.67393 -28.03261 -26.64012 -25.30038 -23.58240 -22.39837 -21.82092 -21.06740 -20.44201 -20.12988 -18.87555 -17.69088 -16.97708 -16.51950 -16.14863 -15.86965 -15.40338 -15.20851 -14.70051 -14.62440 -14.25890 -14.04651 -13.95982 -13.65234 -13.43622 -13.29609 -13.04367 -12.93245 -12.58935 -12.51850 -12.44901 -12.11160 -11.90301 -11.62663 -11.41167 -11.31020 -10.99910 -10.90087 -10.80947 -10.61884 -10.50433 -10.27988 -10.01130 -9.89105 -9.57947 -9.51559 -9.18118 -8.71744 -8.43633 -7.45790 -6.02349 -4.03940 2.47051 2.61653 2.76040 3.16696 3.32800 3.38685 3.42699 4.03954 4.07917 4.24014 4.29810 4.41397 4.44501 4.58730 4.67463 4.74035 4.90650 4.96556 5.04110 5.13271 5.18897 5.25527 5.29736 5.34527 5.38187 5.41519 5.43857 5.54550 5.75057 5.78672 5.89436 6.01434 6.11030 6.16863 6.23624 6.43706 6.58600 6.62709 6.64147 6.88407 6.96750 7.11369 7.30383 7.73811 7.95089 8.11727 8.13994 8.20292 8.47436 9.03433 9.60314 11.08907 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.025021 B = 0.002834 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.769896 B = 9878.440357 C =10282.767691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.182 3.818 10 N -0.502 5.502 11 C 0.048 3.952 12 C -0.104 4.104 13 C -0.098 4.098 14 C -0.115 4.115 15 C 0.102 3.898 16 N -0.627 5.627 17 C 0.113 3.887 18 C 0.113 3.887 19 H 0.091 0.909 20 C -0.124 4.124 21 C -0.157 4.157 22 C 0.522 3.478 23 O -0.534 6.534 24 N -0.718 5.718 25 C 0.530 3.470 26 O -0.512 6.512 27 C 0.056 3.944 28 H 0.261 0.739 29 H -0.005 1.005 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.409 0.591 46 H 0.039 0.961 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.095 -26.606 3.156 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.056 3.944 10 N -0.227 5.227 11 C -0.081 4.081 12 C -0.143 4.143 13 C -0.102 4.102 14 C -0.153 4.153 15 C -0.020 4.020 16 N -0.362 5.362 17 C -0.010 4.010 18 C 0.006 3.994 19 H 0.109 0.891 20 C -0.163 4.163 21 C -0.198 4.198 22 C 0.308 3.692 23 O -0.410 6.410 24 N -0.373 5.373 25 C 0.318 3.682 26 O -0.386 6.386 27 C -0.073 4.073 28 H 0.071 0.929 29 H 0.013 0.987 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.247 0.753 46 H 0.058 0.942 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.010 -26.254 2.393 26.834 hybrid contribution -0.086 1.159 -0.443 1.244 sum 4.924 -25.095 1.951 25.648 Atomic orbital electron populations 1.69957 1.06092 1.26815 1.50958 1.24999 0.94869 0.99371 0.95418 0.86487 0.79769 0.83038 0.78063 1.20722 1.21262 1.19749 1.21101 0.93480 0.89787 1.50129 0.91869 1.19892 0.90340 0.87802 0.96330 1.65617 1.26208 1.01250 1.29599 1.22960 0.98999 0.94118 0.91997 1.22265 0.97917 0.95900 0.98209 1.21437 0.97517 0.94628 0.96610 1.22686 0.98254 0.94691 0.99678 1.22232 0.96062 0.98498 0.85254 1.48363 1.59058 1.10180 1.18561 1.21837 0.95799 0.83550 0.99843 1.22131 0.97674 0.91618 0.87975 0.89119 1.22586 1.02058 0.96135 0.95504 1.22355 1.00905 0.98531 0.97986 1.20810 0.80518 0.83772 0.84124 1.90764 1.63658 1.63634 1.22929 1.46159 1.46466 1.37691 1.06961 1.20654 0.78983 0.83897 0.84714 1.90748 1.45535 1.83025 1.19250 1.22820 0.94410 0.90174 0.99918 0.92900 0.98749 0.95143 0.90129 0.94117 0.90731 0.91313 0.90090 0.88207 0.90945 0.90654 0.89661 0.89055 0.88844 0.89520 0.88067 0.87733 0.75275 0.94234 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -14.36 8.82 -34.44 -0.30 -14.66 16 8 H 0.06 1.76 7.62 -52.49 -0.40 1.36 16 9 C 0.18 4.82 4.57 -4.98 -0.02 4.79 16 10 N -0.50 -10.79 5.36 -231.59 -1.24 -12.03 16 11 C 0.05 0.95 5.99 -1.99 -0.01 0.93 16 12 C -0.10 -1.62 6.27 -25.74 -0.16 -1.78 16 13 C -0.10 -1.40 0.83 -155.24 -0.13 -1.53 16 14 C -0.12 -1.14 6.09 -25.42 -0.15 -1.29 16 15 C 0.10 0.77 7.37 -2.84 -0.02 0.75 16 16 N -0.63 -6.19 2.86 -172.42 -0.49 -6.68 16 17 C 0.11 0.82 5.57 -4.04 -0.02 0.80 16 18 C 0.11 0.70 3.80 -66.98 -0.25 0.44 16 19 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 20 C -0.12 -0.52 6.70 -25.10 -0.17 -0.69 16 21 C -0.16 -1.16 6.86 -26.74 -0.18 -1.34 16 22 C 0.52 6.50 8.43 -10.86 -0.09 6.41 16 23 O -0.53 -9.42 18.03 5.56 0.10 -9.32 16 24 N -0.72 -7.38 5.08 -52.72 -0.27 -7.65 16 25 C 0.53 7.68 5.98 -11.23 -0.07 7.61 16 26 O -0.51 -9.61 16.97 5.56 0.09 -9.52 16 27 C 0.06 1.00 5.55 -2.57 -0.01 0.98 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H -0.01 -0.15 7.88 -51.93 -0.41 -0.56 16 30 H 0.03 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.08 1.60 7.96 -51.93 -0.41 1.19 16 32 H 0.04 0.89 7.82 -51.93 -0.41 0.49 16 33 H 0.07 0.99 7.44 -51.93 -0.39 0.60 16 34 H 0.07 1.11 7.47 -51.93 -0.39 0.72 16 35 H 0.08 0.69 7.61 -51.93 -0.40 0.30 16 36 H 0.10 1.02 7.70 -51.93 -0.40 0.62 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.80 7.93 -51.93 -0.41 0.39 16 40 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.09 0.20 7.89 -51.93 -0.41 -0.21 16 42 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.41 4.67 8.79 -40.82 -0.36 4.31 16 46 H 0.04 0.80 7.77 -51.93 -0.40 0.40 16 47 H 0.08 1.26 7.68 -51.93 -0.40 0.87 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -36.95 375.73 -9.83 -46.78 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.70 Total: -0.61 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.70 Total: 2.91 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -1.27 Total: -52.71 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.19 Total: -18.84 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.95 -9.83 -46.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.569 kcal (2) G-P(sol) polarization free energy of solvation -36.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds