Wall clock time and date at job start Fri Apr 10 2020 18:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99859 * 2 1 4 4 H 1.48502 * 109.46903 * 269.99862 * 3 2 1 5 5 H 1.48500 * 109.47480 * 29.99631 * 3 2 1 6 6 H 1.48503 * 109.47380 * 150.00087 * 3 2 1 7 7 C 1.37879 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99997 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00088 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47043 * 179.97438 * 9 7 2 11 11 C 1.48654 * 111.00128 * 290.12549 * 10 9 7 12 12 C 1.54634 * 104.63377 * 201.48872 * 11 10 9 13 13 C 1.53259 * 104.67532 * 23.69240 * 12 11 10 14 14 C 1.53620 * 111.06020 * 238.99656 * 13 12 11 15 15 C 1.54882 * 101.42915 * 214.76731 * 14 13 12 16 16 N 1.46886 * 105.43286 * 24.87382 * 15 14 13 17 17 C 1.46495 * 124.37650 * 163.05190 * 16 15 14 18 18 C 1.52999 * 109.46943 * 269.72581 * 17 16 15 19 19 H 1.09000 * 110.28936 * 63.02214 * 18 17 16 20 20 C 1.54481 * 110.24698 * 184.99738 * 18 17 16 21 21 C 1.54625 * 101.79703 * 93.59872 * 20 18 17 22 22 C 1.51287 * 104.19667 * 24.78286 * 21 20 18 23 23 O 1.21279 * 124.93807 * 163.71022 * 22 21 20 24 24 N 1.34414 * 110.11346 * 343.74448 * 22 21 20 25 25 C 1.34758 * 111.25190 * 342.78026 * 16 15 14 26 26 O 1.21277 * 125.13275 * 181.27051 * 25 16 15 27 27 C 1.48805 * 110.99905 * 174.51068 * 10 9 7 28 28 H 0.96993 * 120.00473 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46741 * 59.99589 * 9 7 2 30 30 H 1.08993 * 109.46922 * 299.99816 * 9 7 2 31 31 H 1.09004 * 110.40562 * 82.69643 * 11 10 9 32 32 H 1.09005 * 110.50259 * 320.32946 * 11 10 9 33 33 H 1.08995 * 110.40082 * 264.89232 * 12 11 10 34 34 H 1.08998 * 110.40018 * 142.48683 * 12 11 10 35 35 H 1.09003 * 111.01806 * 333.03946 * 14 13 12 36 36 H 1.08998 * 111.01546 * 96.88813 * 14 13 12 37 37 H 1.08997 * 110.38986 * 265.83446 * 15 14 13 38 38 H 1.08999 * 110.17204 * 143.79502 * 15 14 13 39 39 H 1.08994 * 109.47629 * 149.72319 * 17 16 15 40 40 H 1.09009 * 109.46881 * 29.71788 * 17 16 15 41 41 H 1.09002 * 110.96936 * 335.46284 * 20 18 17 42 42 H 1.09003 * 110.97019 * 211.73907 * 20 18 17 43 43 H 1.09010 * 110.48568 * 143.45878 * 21 20 18 44 44 H 1.09001 * 110.49203 * 266.09928 * 21 20 18 45 45 H 0.96996 * 124.34684 * 179.59158 * 24 22 21 46 46 H 1.08999 * 110.45585 * 39.47253 * 27 10 9 47 47 H 1.09004 * 110.45131 * 276.90758 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9149 -3.7103 -1.3025 12 6 3.4242 -5.1690 -1.3651 13 6 2.4920 -5.9463 -0.4293 14 6 3.2829 -6.6240 0.6998 15 6 2.4768 -7.9317 0.8972 16 7 1.8063 -8.1751 -0.3868 17 6 1.2275 -9.4599 -0.7873 18 6 2.2849 -10.2899 -1.5179 19 1 3.1152 -10.5174 -0.8494 20 6 1.6604 -11.5956 -2.0580 21 6 1.2722 -11.1883 -3.4982 22 6 2.2114 -10.0489 -3.8275 23 8 2.4309 -9.6304 -4.9444 24 7 2.7678 -9.5685 -2.7021 25 6 1.7871 -7.0622 -1.1466 26 8 1.2778 -6.9749 -2.2437 27 6 1.5012 -4.9197 0.1334 28 1 -0.4850 0.8399 0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8903 31 1 3.7527 -3.0136 -1.3307 32 1 2.2287 -3.5117 -2.1259 33 1 4.4533 -5.2276 -1.0107 34 1 3.3492 -5.5544 -2.3819 35 1 4.3063 -6.8341 0.3888 36 1 3.2685 -6.0178 1.6056 37 1 1.7392 -7.8071 1.6900 38 1 3.1496 -8.7560 1.1333 39 1 0.3802 -9.2859 -1.4504 40 1 0.8911 -9.9987 0.0986 41 1 0.7790 -11.8744 -1.4804 42 1 2.3915 -12.4040 -2.0648 43 1 1.4268 -12.0207 -4.1849 44 1 0.2363 -10.8510 -3.5333 45 1 3.4067 -8.8392 -2.6756 46 1 0.5816 -4.9172 -0.4518 47 1 1.2868 -5.1317 1.1809 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:58 Heat of formation + Delta-G solvation = -88.257553 kcal Electronic energy + Delta-G solvation = -28210.263157 eV Core-core repulsion = 24391.353002 eV Total energy + Delta-G solvation = -3818.910155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.25376 -41.16449 -39.06806 -37.89738 -37.17569 -35.26952 -33.70796 -32.19633 -31.51519 -29.74527 -29.21842 -28.35501 -26.08145 -25.04675 -23.92802 -22.50093 -22.04898 -21.75320 -21.20913 -19.98445 -18.56966 -18.45733 -17.83042 -17.34130 -17.01395 -16.47648 -16.34759 -16.12916 -15.89725 -15.48733 -15.34889 -14.94158 -14.69219 -14.62543 -14.38577 -14.21431 -14.05232 -13.71873 -13.54189 -13.49287 -13.22903 -13.02579 -12.92528 -12.67969 -12.65862 -12.34980 -12.23189 -12.12719 -11.95697 -11.86057 -11.83900 -11.61768 -11.27392 -10.96675 -10.70196 -10.65728 -10.41683 -9.49890 -9.35389 -8.25204 -6.36377 1.38834 1.40898 1.44420 1.52769 1.61434 1.97507 2.37616 2.45260 3.07056 3.12013 3.43806 3.45585 3.55038 3.58162 3.63070 3.86198 3.97816 4.04398 4.13424 4.24017 4.25995 4.41900 4.44414 4.53832 4.59432 4.61363 4.73998 4.78098 4.80845 4.83899 4.91664 4.93937 4.97448 5.08376 5.09372 5.16522 5.17254 5.21005 5.27892 5.57578 5.65738 5.84391 5.89099 6.05812 6.07534 6.10875 6.38398 6.78810 7.16825 7.22178 7.33740 8.86949 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.025021 B = 0.002834 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.769896 B = 9878.440357 C =10282.767691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.524 4.524 8 H 0.067 0.933 9 C 0.198 3.802 10 N -0.499 5.499 11 C 0.044 3.956 12 C -0.092 4.092 13 C -0.098 4.098 14 C -0.109 4.109 15 C 0.103 3.897 16 N -0.612 5.612 17 C 0.106 3.894 18 C 0.111 3.889 19 H 0.126 0.874 20 C -0.108 4.108 21 C -0.154 4.154 22 C 0.501 3.499 23 O -0.605 6.605 24 N -0.718 5.718 25 C 0.522 3.478 26 O -0.570 6.570 27 C 0.057 3.943 28 H 0.265 0.735 29 H -0.048 1.048 30 H 0.008 0.992 31 H 0.079 0.921 32 H 0.003 0.997 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.057 0.943 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.104 0.896 45 H 0.399 0.601 46 H 0.002 0.998 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.199 -29.458 6.322 30.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.798 3.202 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.562 4.562 8 H 0.085 0.915 9 C 0.071 3.929 10 N -0.223 5.223 11 C -0.084 4.084 12 C -0.131 4.131 13 C -0.102 4.102 14 C -0.146 4.146 15 C -0.018 4.018 16 N -0.345 5.345 17 C -0.016 4.016 18 C 0.005 3.995 19 H 0.144 0.856 20 C -0.145 4.145 21 C -0.194 4.194 22 C 0.289 3.711 23 O -0.487 6.487 24 N -0.370 5.370 25 C 0.310 3.690 26 O -0.449 6.449 27 C -0.072 4.072 28 H 0.074 0.926 29 H -0.031 1.031 30 H 0.026 0.974 31 H 0.097 0.903 32 H 0.021 0.979 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.076 0.924 40 H 0.158 0.842 41 H 0.143 0.857 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.122 0.878 45 H 0.236 0.764 46 H 0.020 0.980 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.129 -29.183 5.662 30.571 hybrid contribution -0.795 2.024 -1.394 2.583 sum 6.334 -27.160 4.269 28.213 Atomic orbital electron populations 1.70100 1.07954 1.28059 1.51654 1.26010 0.95789 1.03559 0.94605 0.85307 0.78729 0.77791 0.78348 1.20160 1.20500 1.18249 1.21420 0.93748 0.90758 1.50280 0.91509 1.19528 0.90377 0.89796 0.93188 1.65521 1.25064 1.01521 1.30204 1.22976 0.97920 0.97551 0.89983 1.22190 0.99887 0.92527 0.98465 1.21412 0.96768 0.94018 0.98015 1.22731 0.99088 0.95355 0.97445 1.22521 0.96730 0.98710 0.83855 1.48430 1.57737 1.09787 1.18514 1.22172 0.95278 0.82589 1.01546 1.22493 0.98485 0.91678 0.86805 0.85649 1.22677 1.03742 0.95388 0.92728 1.22405 0.99379 0.96744 1.00890 1.21827 0.80847 0.84761 0.83619 1.90705 1.66161 1.66080 1.25715 1.46423 1.45415 1.37085 1.08042 1.20674 0.78717 0.85332 0.84295 1.90726 1.48092 1.84132 1.21917 1.22871 0.93840 0.89694 1.00799 0.92608 1.03075 0.97373 0.90254 0.97885 0.87336 0.92459 0.87750 0.87960 0.89564 0.85926 0.92413 0.84249 0.85715 0.87261 0.86984 0.87789 0.76449 0.97967 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.49 13.29 21.45 0.28 -58.20 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 3 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.52 -30.73 8.82 25.60 0.23 -30.50 16 8 H 0.07 3.79 7.62 -2.91 -0.02 3.76 16 9 C 0.20 11.17 4.57 85.56 0.39 11.57 16 10 N -0.50 -22.37 5.36 -886.62 -4.75 -27.13 16 11 C 0.04 1.85 5.99 86.52 0.52 2.37 16 12 C -0.09 -2.89 6.27 31.24 0.20 -2.69 16 13 C -0.10 -2.74 0.83 -52.66 -0.04 -2.79 16 14 C -0.11 -1.72 6.09 31.45 0.19 -1.52 16 15 C 0.10 0.99 7.37 86.95 0.64 1.63 16 16 N -0.61 -10.20 2.86 -817.81 -2.34 -12.54 16 17 C 0.11 1.14 5.57 86.38 0.48 1.63 16 18 C 0.11 0.91 3.80 45.43 0.17 1.09 16 19 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 20 C -0.11 -0.40 6.70 31.65 0.21 -0.19 16 21 C -0.15 -2.05 6.86 30.59 0.21 -1.84 16 22 C 0.50 12.84 8.43 87.90 0.74 13.58 16 23 O -0.60 -23.06 18.03 -3.03 -0.05 -23.11 16 24 N -0.72 -14.10 5.08 -439.32 -2.23 -16.33 16 25 C 0.52 15.07 5.98 87.51 0.52 15.59 16 26 O -0.57 -22.77 16.97 -3.02 -0.05 -22.82 16 27 C 0.06 2.10 5.55 86.06 0.48 2.58 16 28 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 29 H -0.05 -3.08 7.88 -2.39 -0.02 -3.10 16 30 H 0.01 0.49 8.13 -2.39 -0.02 0.47 16 31 H 0.08 3.28 7.96 -2.38 -0.02 3.26 16 32 H 0.00 0.13 7.82 -2.38 -0.02 0.11 16 33 H 0.11 2.65 7.44 -2.39 -0.02 2.63 16 34 H 0.06 1.94 7.47 -2.39 -0.02 1.92 16 35 H 0.10 1.23 7.61 -2.39 -0.02 1.22 16 36 H 0.10 1.65 7.70 -2.39 -0.02 1.64 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.06 1.00 7.93 -2.39 -0.02 0.98 16 40 H 0.14 0.25 8.14 -2.38 -0.02 0.23 16 41 H 0.12 -0.21 7.89 -2.39 -0.02 -0.23 16 42 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.40 9.05 8.79 -92.71 -0.81 8.24 16 46 H 0.00 0.08 7.77 -2.39 -0.02 0.07 16 47 H 0.10 3.19 7.68 -2.38 -0.02 3.17 16 Total: -1.00 -91.98 375.73 -1.57 -93.54 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.15 Total: 8.43 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 5.40 Total: 10.85 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -9.04 Total: -114.21 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -0.11 Total: -45.93 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -91.98 -1.57 -93.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.287 kcal (2) G-P(sol) polarization free energy of solvation -91.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds