Wall clock time and date at job start Fri Apr 10 2020 18:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86801 * 120.00151 * 2 1 4 4 H 1.48499 * 109.46833 * 269.99628 * 3 2 1 5 5 H 1.48498 * 109.47165 * 29.99750 * 3 2 1 6 6 H 1.48503 * 109.47050 * 150.00004 * 3 2 1 7 7 C 1.38953 * 119.99520 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99827 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99780 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99852 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99932 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99990 * 179.32030 * 13 12 10 15 15 C 1.50699 * 109.46952 * 57.20336 * 14 13 12 16 16 N 1.34777 * 120.00077 * 41.29718 * 15 14 13 17 17 O 1.21283 * 119.99942 * 221.29184 * 15 14 13 18 18 C 1.52999 * 109.47338 * 297.20008 * 14 13 12 19 19 C 1.52997 * 109.47427 * 179.97438 * 18 14 13 20 20 C 1.53003 * 109.47374 * 60.00016 * 19 18 14 21 21 C 1.53003 * 109.46873 * 59.99868 * 20 19 18 22 22 C 1.52998 * 109.47133 * 300.00771 * 21 20 19 23 23 C 1.52993 * 109.47491 * 59.99796 * 22 21 20 24 24 C 1.52999 * 109.46861 * 299.99441 * 22 21 20 25 25 C 1.52999 * 109.47257 * 60.00553 * 24 22 21 26 26 C 1.52997 * 109.46830 * 300.00075 * 25 24 22 27 27 H 0.97002 * 119.99422 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00039 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.47322 * 59.98742 * 12 10 9 30 30 H 1.09002 * 109.46255 * 299.99095 * 12 10 9 31 31 H 1.00897 * 111.00020 * 303.27703 * 13 12 10 32 32 H 0.97001 * 119.99624 * 354.98856 * 16 15 14 33 33 H 0.96999 * 120.00257 * 174.98840 * 16 15 14 34 34 H 1.09005 * 109.46947 * 59.99894 * 18 14 13 35 35 H 1.09006 * 109.47336 * 300.00326 * 19 18 14 36 36 H 1.08996 * 109.47510 * 180.02562 * 19 18 14 37 37 H 1.08992 * 109.47362 * 180.02562 * 20 19 18 38 38 H 1.08992 * 109.47131 * 179.97438 * 21 20 19 39 39 H 1.09006 * 109.46545 * 60.00383 * 21 20 19 40 40 H 1.09003 * 109.46570 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47392 * 60.00201 * 23 22 21 42 42 H 1.09008 * 109.47032 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.47346 * 300.00024 * 24 22 21 44 44 H 1.09008 * 109.47096 * 180.02562 * 24 22 21 45 45 H 1.08996 * 109.47008 * 179.97438 * 25 24 22 46 46 H 1.09006 * 109.47336 * 179.97438 * 26 25 24 47 47 H 1.09005 * 109.47131 * 299.99594 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3233 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0011 12 6 1.2436 -4.8630 -0.0034 13 7 2.1981 -5.9795 -0.0036 14 6 1.4978 -7.2708 0.0110 15 6 0.5720 -7.3535 -1.1752 16 7 0.9767 -6.9015 -2.3788 17 8 -0.5372 -7.8269 -1.0469 18 6 0.6857 -7.3960 1.3015 19 6 -0.0442 -8.7406 1.3164 20 6 0.9781 -9.8767 1.2450 21 6 1.9182 -9.7933 2.4493 22 6 2.6479 -8.4487 2.4344 23 6 1.6256 -7.3127 2.5059 24 6 3.4601 -8.3235 1.1439 25 6 2.5202 -8.4068 -0.0604 26 6 1.7903 -9.7514 -0.0455 27 1 -0.4849 0.8401 -0.0004 28 1 0.3533 -2.3906 -0.0016 29 1 0.6178 -4.9200 -0.8939 30 1 0.6160 -4.9212 0.8860 31 1 2.8265 -5.9178 -0.7906 32 1 1.8345 -6.4573 -2.4665 33 1 0.4102 -7.0204 -3.1571 34 1 -0.0430 -6.5869 1.3522 35 1 -0.7140 -8.8000 0.4585 36 1 -0.6232 -8.8296 2.2356 37 1 0.4581 -10.8345 1.2551 38 1 2.6461 -10.6029 2.3986 39 1 1.3395 -9.8825 3.3687 40 1 3.3180 -8.3895 3.2921 41 1 1.0470 -7.4018 3.4253 42 1 2.1456 -6.3547 2.4948 43 1 4.1886 -9.1328 1.0930 44 1 3.9805 -7.3657 1.1335 45 1 3.0988 -8.3172 -0.9798 46 1 1.1202 -9.8107 -0.9033 47 1 2.5187 -10.5608 -0.0965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307830853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:16 Heat of formation + Delta-G solvation = -83.899487 kcal Electronic energy + Delta-G solvation = -29516.441203 eV Core-core repulsion = 25697.720028 eV Total energy + Delta-G solvation = -3818.721175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.11367 -38.86647 -38.19296 -35.60802 -33.94147 -33.54220 -32.56475 -32.34903 -31.31673 -30.84644 -27.22502 -25.75270 -25.30843 -23.87097 -22.37688 -21.70774 -21.11707 -20.13434 -19.16295 -18.15511 -17.89803 -17.07262 -16.74447 -15.93468 -15.27273 -15.14559 -14.91002 -14.51550 -14.40385 -14.23635 -14.08461 -13.79896 -13.56706 -13.49977 -13.18601 -12.77456 -12.65730 -12.54661 -12.41926 -12.24115 -11.61722 -11.52575 -11.24283 -11.21671 -11.07798 -10.79455 -10.77226 -10.67992 -10.41730 -10.36523 -10.24647 -9.74698 -9.65500 -9.61179 -9.53914 -9.25402 -8.49386 -8.12338 -7.99591 -6.44417 -3.85644 2.56766 3.15540 3.24809 3.30335 3.40217 3.85626 3.96830 4.23112 4.43136 4.53048 4.67992 4.89239 5.01071 5.06464 5.13569 5.18691 5.21719 5.32068 5.35896 5.37570 5.43744 5.50874 5.61479 5.73331 5.76303 5.77597 5.82934 5.89439 5.94430 6.03460 6.07506 6.14128 6.19544 6.21119 6.28103 6.40402 6.47254 6.52217 6.55810 6.67684 6.86729 6.97450 7.26551 7.46599 7.52345 8.02294 8.22535 8.57001 9.14343 9.50463 10.01013 10.73094 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.003523 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.970724 B = 7946.305978 C = 8315.860454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.442 3.558 11 O -0.582 6.582 12 C 0.041 3.959 13 N -0.641 5.641 14 C 0.114 3.886 15 C 0.497 3.503 16 N -0.857 5.857 17 O -0.535 6.535 18 C -0.054 4.054 19 C -0.133 4.133 20 C -0.082 4.082 21 C -0.109 4.109 22 C -0.082 4.082 23 C -0.103 4.103 24 C -0.099 4.099 25 C -0.066 4.066 26 C -0.109 4.109 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.347 0.653 32 H 0.400 0.600 33 H 0.399 0.601 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 -19.023 -0.029 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.227 3.773 11 O -0.467 6.467 12 C -0.092 4.092 13 N -0.274 5.274 14 C 0.019 3.981 15 C 0.280 3.720 16 N -0.421 5.421 17 O -0.410 6.410 18 C -0.074 4.074 19 C -0.170 4.170 20 C -0.101 4.101 21 C -0.147 4.147 22 C -0.100 4.100 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.085 4.085 26 C -0.147 4.147 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.168 0.832 32 H 0.229 0.771 33 H 0.230 0.770 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.664 -19.152 0.927 19.246 hybrid contribution -0.454 1.119 -1.420 1.865 sum 1.210 -18.033 -0.494 18.080 Atomic orbital electron populations 1.69620 1.05965 1.28225 1.50298 1.25274 0.95616 0.99755 0.97221 0.85859 0.79274 0.80803 0.78366 1.20434 1.20903 1.19360 1.19696 0.93354 0.82170 1.47780 0.87861 1.41857 1.09224 1.04600 1.64061 1.19666 0.88300 0.84514 0.84795 1.90525 1.13551 1.86994 1.55617 1.21855 0.94564 0.90977 1.01765 1.60153 1.18372 0.98707 1.50196 1.21275 0.92659 0.91387 0.92733 1.21944 0.88497 0.76141 0.85405 1.44036 1.24713 1.62674 1.10685 1.90548 1.21464 1.44907 1.84111 1.20828 0.96023 0.98282 0.92237 1.22088 0.98124 0.92893 1.03922 1.21003 0.96014 0.98644 0.94418 1.21587 0.98142 0.97135 0.97788 1.20992 0.96721 0.94642 0.97692 1.21475 0.96694 0.99568 0.96281 1.21443 0.96598 1.02671 0.92977 1.20988 0.95129 0.92790 0.99630 1.21571 0.98751 0.96286 0.98096 0.91819 0.77483 0.93735 0.89028 0.83216 0.77131 0.76999 0.91079 0.87632 0.92546 0.91718 0.92527 0.92283 0.91437 0.92502 0.90027 0.92438 0.89834 0.91234 0.92178 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 2 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 3 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 10 C 0.44 9.97 7.82 -10.98 -0.09 9.88 16 11 O -0.58 -14.90 15.79 5.55 0.09 -14.81 16 12 C 0.04 0.70 5.47 -4.98 -0.03 0.67 16 13 N -0.64 -9.32 4.04 -102.40 -0.41 -9.73 16 14 C 0.11 1.45 0.25 -132.75 -0.03 1.42 16 15 C 0.50 6.59 4.33 -10.99 -0.05 6.54 16 16 N -0.86 -9.04 8.22 31.22 0.26 -8.79 16 17 O -0.53 -8.50 13.81 5.55 0.08 -8.42 16 18 C -0.05 -0.73 1.77 -90.62 -0.16 -0.89 16 19 C -0.13 -1.66 4.90 -26.73 -0.13 -1.80 16 20 C -0.08 -0.89 3.20 -90.62 -0.29 -1.18 16 21 C -0.11 -1.09 5.19 -26.73 -0.14 -1.23 16 22 C -0.08 -0.91 3.19 -90.62 -0.29 -1.20 16 23 C -0.10 -1.31 5.04 -26.74 -0.13 -1.44 16 24 C -0.10 -1.10 5.03 -26.73 -0.13 -1.23 16 25 C -0.07 -0.73 2.33 -90.62 -0.21 -0.94 16 26 C -0.11 -1.15 4.97 -26.73 -0.13 -1.28 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 29 H 0.04 0.73 6.62 -51.93 -0.34 0.39 16 30 H 0.09 1.56 6.34 -51.93 -0.33 1.23 16 31 H 0.35 4.92 7.21 -39.29 -0.28 4.64 16 32 H 0.40 3.77 7.52 -40.82 -0.31 3.46 16 33 H 0.40 3.70 8.93 -40.82 -0.36 3.33 16 34 H 0.07 1.06 6.45 -51.93 -0.33 0.72 16 35 H 0.11 1.53 4.95 -51.96 -0.26 1.27 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.21 7.60 -51.92 -0.39 0.82 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 1.06 7.61 -51.92 -0.39 0.67 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.70 7.04 -51.93 -0.37 0.33 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 346.66 15.07 5.22 5.22 Total: -1.00 -30.75 346.66 -8.20 -38.94 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -7.01 Total: 19.92 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.06 Total: -0.50 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.51 Total: -56.11 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.16 Total: -23.24 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.75 -8.20 -38.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307830853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.956 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds