Wall clock time and date at job start Fri Apr 10 2020 18:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86801 * 120.00151 * 2 1 4 4 H 1.48499 * 109.46833 * 269.99628 * 3 2 1 5 5 H 1.48498 * 109.47165 * 29.99750 * 3 2 1 6 6 H 1.48503 * 109.47050 * 150.00004 * 3 2 1 7 7 C 1.38953 * 119.99520 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99827 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99780 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99852 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99932 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47116 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99990 * 179.32030 * 13 12 10 15 15 C 1.50699 * 109.46952 * 57.20336 * 14 13 12 16 16 N 1.34777 * 120.00077 * 41.29718 * 15 14 13 17 17 O 1.21283 * 119.99942 * 221.29184 * 15 14 13 18 18 C 1.52999 * 109.47338 * 297.20008 * 14 13 12 19 19 C 1.52997 * 109.47427 * 179.97438 * 18 14 13 20 20 C 1.53003 * 109.47374 * 60.00016 * 19 18 14 21 21 C 1.53003 * 109.46873 * 59.99868 * 20 19 18 22 22 C 1.52998 * 109.47133 * 300.00771 * 21 20 19 23 23 C 1.52993 * 109.47491 * 59.99796 * 22 21 20 24 24 C 1.52999 * 109.46861 * 299.99441 * 22 21 20 25 25 C 1.52999 * 109.47257 * 60.00553 * 24 22 21 26 26 C 1.52997 * 109.46830 * 300.00075 * 25 24 22 27 27 H 0.97002 * 119.99422 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00039 * 359.97438 * 9 7 2 29 29 H 1.08994 * 109.47322 * 59.98742 * 12 10 9 30 30 H 1.09002 * 109.46255 * 299.99095 * 12 10 9 31 31 H 1.00897 * 111.00020 * 303.27703 * 13 12 10 32 32 H 0.97001 * 119.99624 * 354.98856 * 16 15 14 33 33 H 0.96999 * 120.00257 * 174.98840 * 16 15 14 34 34 H 1.09005 * 109.46947 * 59.99894 * 18 14 13 35 35 H 1.09006 * 109.47336 * 300.00326 * 19 18 14 36 36 H 1.08996 * 109.47510 * 180.02562 * 19 18 14 37 37 H 1.08992 * 109.47362 * 180.02562 * 20 19 18 38 38 H 1.08992 * 109.47131 * 179.97438 * 21 20 19 39 39 H 1.09006 * 109.46545 * 60.00383 * 21 20 19 40 40 H 1.09003 * 109.46570 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.47392 * 60.00201 * 23 22 21 42 42 H 1.09008 * 109.47032 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.47346 * 300.00024 * 24 22 21 44 44 H 1.09008 * 109.47096 * 180.02562 * 24 22 21 45 45 H 1.08996 * 109.47008 * 179.97438 * 25 24 22 46 46 H 1.09006 * 109.47336 * 179.97438 * 26 25 24 47 47 H 1.09005 * 109.47131 * 299.99594 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0001 9 7 1.3233 -2.3906 -0.0016 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0011 12 6 1.2436 -4.8630 -0.0034 13 7 2.1981 -5.9795 -0.0036 14 6 1.4978 -7.2708 0.0110 15 6 0.5720 -7.3535 -1.1752 16 7 0.9767 -6.9015 -2.3788 17 8 -0.5372 -7.8269 -1.0469 18 6 0.6857 -7.3960 1.3015 19 6 -0.0442 -8.7406 1.3164 20 6 0.9781 -9.8767 1.2450 21 6 1.9182 -9.7933 2.4493 22 6 2.6479 -8.4487 2.4344 23 6 1.6256 -7.3127 2.5059 24 6 3.4601 -8.3235 1.1439 25 6 2.5202 -8.4068 -0.0604 26 6 1.7903 -9.7514 -0.0455 27 1 -0.4849 0.8401 -0.0004 28 1 0.3533 -2.3906 -0.0016 29 1 0.6178 -4.9200 -0.8939 30 1 0.6160 -4.9212 0.8860 31 1 2.8265 -5.9178 -0.7906 32 1 1.8345 -6.4573 -2.4665 33 1 0.4102 -7.0204 -3.1571 34 1 -0.0430 -6.5869 1.3522 35 1 -0.7140 -8.8000 0.4585 36 1 -0.6232 -8.8296 2.2356 37 1 0.4581 -10.8345 1.2551 38 1 2.6461 -10.6029 2.3986 39 1 1.3395 -9.8825 3.3687 40 1 3.3180 -8.3895 3.2921 41 1 1.0470 -7.4018 3.4253 42 1 2.1456 -6.3547 2.4948 43 1 4.1886 -9.1328 1.0930 44 1 3.9805 -7.3657 1.1335 45 1 3.0988 -8.3172 -0.9798 46 1 1.1202 -9.8107 -0.9033 47 1 2.5187 -10.5608 -0.0965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307830853.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:15 Heat of formation + Delta-G solvation = -106.703926 kcal Electronic energy + Delta-G solvation = -29517.430078 eV Core-core repulsion = 25697.720028 eV Total energy + Delta-G solvation = -3819.710050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.11291 -40.15826 -39.77181 -36.89349 -35.87106 -34.58060 -33.49866 -33.30256 -33.24428 -32.03128 -28.62323 -26.79423 -26.68473 -25.40841 -23.31523 -22.73926 -22.04506 -21.27382 -20.80976 -19.88223 -19.13220 -18.33524 -17.79935 -17.31666 -16.79268 -16.37006 -16.15739 -16.00295 -15.87188 -15.43263 -15.18613 -15.08430 -14.91747 -14.48944 -14.17027 -14.15052 -13.75770 -13.67773 -13.57744 -13.47701 -13.32197 -13.00245 -12.80477 -12.42061 -12.22828 -12.16702 -12.11254 -11.78910 -11.68368 -11.59592 -11.50550 -11.34336 -10.74975 -10.56879 -10.55255 -10.36747 -10.24205 -10.02462 -9.36757 -8.47015 -5.96104 1.37821 1.42243 1.50210 1.55093 2.02106 2.26769 2.41448 2.77052 3.19722 3.42577 3.47637 3.59896 3.76710 3.94739 4.14647 4.16692 4.22725 4.24986 4.30744 4.40063 4.41669 4.47451 4.51497 4.54546 4.60868 4.75046 4.85597 4.90585 4.94791 5.07980 5.17060 5.19206 5.25649 5.27108 5.31151 5.40553 5.44208 5.54241 5.57527 5.62003 5.69887 5.80972 5.94310 6.00621 6.20672 6.35272 6.57167 7.11130 7.23385 7.53785 8.07482 8.70422 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021785 B = 0.003523 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.970724 B = 7946.305978 C = 8315.860454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.331 4.331 8 H 0.084 0.916 9 N -0.573 5.573 10 C 0.445 3.555 11 O -0.612 6.612 12 C 0.060 3.940 13 N -0.641 5.641 14 C 0.119 3.881 15 C 0.494 3.506 16 N -0.844 5.844 17 O -0.562 6.562 18 C -0.057 4.057 19 C -0.130 4.130 20 C -0.082 4.082 21 C -0.103 4.103 22 C -0.082 4.082 23 C -0.100 4.100 24 C -0.097 4.097 25 C -0.065 4.065 26 C -0.105 4.105 27 H 0.277 0.723 28 H 0.393 0.607 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.351 0.649 32 H 0.407 0.593 33 H 0.408 0.592 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 -20.388 -0.168 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.101 0.899 9 N -0.210 5.210 10 C 0.232 3.768 11 O -0.498 6.498 12 C -0.072 4.072 13 N -0.274 5.274 14 C 0.024 3.976 15 C 0.277 3.723 16 N -0.409 5.409 17 O -0.440 6.440 18 C -0.076 4.076 19 C -0.167 4.167 20 C -0.100 4.100 21 C -0.140 4.140 22 C -0.100 4.100 23 C -0.138 4.138 24 C -0.134 4.134 25 C -0.084 4.084 26 C -0.143 4.143 27 H 0.086 0.914 28 H 0.226 0.774 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.172 0.828 32 H 0.237 0.763 33 H 0.240 0.760 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.067 0.933 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.443 -20.527 0.763 20.686 hybrid contribution -0.707 1.510 -1.380 2.165 sum 1.736 -19.017 -0.617 19.106 Atomic orbital electron populations 1.69692 1.06988 1.29284 1.50368 1.26063 0.96472 1.02519 0.96250 0.84917 0.77923 0.76792 0.78666 1.19552 1.19842 1.19538 1.19693 0.92800 0.83790 1.49805 0.89850 1.41933 1.09220 1.04837 1.64980 1.20496 0.88157 0.85575 0.82525 1.90498 1.15151 1.87740 1.56385 1.21584 0.94275 0.89008 1.02343 1.60121 1.18015 0.98765 1.50538 1.21296 0.92983 0.90873 0.92406 1.21995 0.88123 0.76040 0.86094 1.43932 1.25017 1.61627 1.10274 1.90557 1.22476 1.46347 1.84624 1.20825 0.95798 0.98145 0.92875 1.22012 0.98396 0.93156 1.03171 1.21025 0.95789 0.98175 0.95042 1.21547 0.98225 0.96741 0.97493 1.21010 0.96367 0.94560 0.98093 1.21422 0.96934 0.99192 0.96208 1.21419 0.96772 1.02439 0.92796 1.21048 0.94709 0.92270 1.00383 1.21556 0.98892 0.96376 0.97467 0.91363 0.77354 0.92660 0.88831 0.82821 0.76289 0.76033 0.93461 0.89475 0.92339 0.90577 0.90591 0.91864 0.90763 0.92152 0.92667 0.90270 0.91824 0.89951 0.93279 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.98 13.05 21.66 0.28 -49.70 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 3 Si 0.99 42.51 29.55 68.60 2.03 44.53 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -29.12 5.29 -306.98 -1.62 -30.75 16 10 C 0.45 20.49 7.82 87.66 0.69 21.18 16 11 O -0.61 -31.90 15.79 -3.05 -0.05 -31.95 16 12 C 0.06 2.09 5.47 85.56 0.47 2.56 16 13 N -0.64 -18.52 4.04 -477.89 -1.93 -20.45 16 14 C 0.12 2.94 0.25 2.78 0.00 2.94 16 15 C 0.49 12.77 4.33 87.66 0.38 13.15 16 16 N -0.84 -16.88 8.22 -173.53 -1.43 -18.30 16 17 O -0.56 -17.75 13.81 -3.04 -0.04 -17.79 16 18 C -0.06 -1.51 1.77 -10.80 -0.02 -1.53 16 19 C -0.13 -3.16 4.90 30.59 0.15 -3.01 16 20 C -0.08 -1.57 3.20 -10.79 -0.03 -1.60 16 21 C -0.10 -1.74 5.19 30.59 0.16 -1.58 16 22 C -0.08 -1.66 3.19 -10.80 -0.03 -1.69 16 23 C -0.10 -2.51 5.04 30.59 0.15 -2.36 16 24 C -0.10 -1.93 5.03 30.59 0.15 -1.77 16 25 C -0.06 -1.30 2.33 -10.79 -0.03 -1.33 16 26 C -0.11 -1.94 4.97 30.59 0.15 -1.78 16 27 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.39 19.50 7.90 -92.71 -0.73 18.77 16 29 H 0.06 1.81 6.62 -2.39 -0.02 1.79 16 30 H 0.09 3.26 6.34 -2.39 -0.02 3.24 16 31 H 0.35 9.74 7.21 -89.70 -0.65 9.10 16 32 H 0.41 7.13 7.52 -92.71 -0.70 6.44 16 33 H 0.41 7.05 8.93 -92.71 -0.83 6.22 16 34 H 0.05 1.45 6.45 -2.38 -0.02 1.43 16 35 H 0.09 2.51 4.95 -2.90 -0.01 2.50 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 1.67 7.60 -2.38 -0.02 1.65 16 43 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.06 1.54 7.61 -2.38 -0.02 1.53 16 45 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.05 1.04 7.04 -2.38 -0.02 1.02 16 47 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -66.51 346.66 -1.15 -67.66 By element: Atomic # 1 Polarization: 53.40 SS G_CDS: -1.86 Total: 51.54 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 3.47 Total: 5.20 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -4.70 Total: -119.20 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -0.09 Total: -49.74 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -66.51 -1.15 -67.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307830853.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.039 kcal (2) G-P(sol) polarization free energy of solvation -66.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds