Wall clock time and date at job start Fri Apr 10 2020 18:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00029 * 2 1 4 4 H 1.48498 * 109.47387 * 269.99784 * 3 2 1 5 5 H 1.48503 * 109.47177 * 30.00338 * 3 2 1 6 6 H 1.48507 * 109.47160 * 149.99859 * 3 2 1 7 7 C 1.37883 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99520 * 172.36433 * 7 2 1 9 9 C 1.50702 * 119.99931 * 352.36492 * 7 2 1 10 10 C 1.53002 * 115.54735 * 294.72409 * 9 7 2 11 11 N 1.46503 * 109.46957 * 275.65104 * 10 9 7 12 12 C 1.34774 * 119.99966 * 185.00701 * 11 10 9 13 13 O 1.21350 * 120.00112 * 4.84202 * 12 11 10 14 14 C 1.49456 * 119.99945 * 184.56799 * 12 11 10 15 15 O 1.21349 * 119.99943 * 355.63092 * 14 12 11 16 16 N 1.34780 * 119.99943 * 175.62494 * 14 12 11 17 17 C 1.47083 * 125.43132 * 180.02562 * 16 14 12 18 18 C 1.53425 * 106.98866 * 179.56224 * 17 16 14 19 19 H 1.08994 * 108.00046 * 265.21900 * 18 17 16 20 20 C 1.50060 * 112.64387 * 145.78056 * 18 17 16 21 21 C 1.49843 * 115.87269 * 277.21122 * 20 18 17 22 22 N 1.46470 * 110.71224 * 313.57265 * 21 20 18 23 23 C 1.46725 * 110.30766 * 61.30832 * 22 21 20 24 24 C 1.52901 * 109.62587 * 293.43349 * 23 22 21 25 25 H 1.08999 * 111.41847 * 289.83827 * 24 23 22 26 26 C 1.47041 * 125.43094 * 359.69488 * 16 14 12 27 27 C 1.52999 * 117.52012 * 80.42327 * 9 7 2 28 28 C 1.52997 * 117.49538 * 149.05406 * 9 7 2 29 29 H 0.96993 * 119.99620 * 5.00890 * 1 2 3 30 30 H 1.09002 * 109.46705 * 155.65549 * 10 9 7 31 31 H 1.08999 * 109.47630 * 35.64787 * 10 9 7 32 32 H 0.97002 * 120.00317 * 5.00648 * 11 10 9 33 33 H 1.08998 * 109.92615 * 298.89228 * 17 16 14 34 34 H 1.08998 * 109.93002 * 60.22763 * 17 16 14 35 35 H 1.09000 * 108.41664 * 38.14399 * 20 18 17 36 36 H 1.09001 * 108.41359 * 155.37815 * 20 18 17 37 37 H 1.08999 * 109.45648 * 193.17603 * 21 20 18 38 38 H 1.09002 * 109.12665 * 73.76049 * 21 20 18 39 39 H 1.00904 * 110.99945 * 184.76818 * 22 21 20 40 40 H 1.08999 * 109.44332 * 173.38862 * 23 22 21 41 41 H 1.08994 * 109.44538 * 53.48431 * 23 22 21 42 42 H 1.08994 * 110.16332 * 279.67932 * 26 16 14 43 43 H 1.09003 * 110.16214 * 41.45230 * 26 16 14 44 44 H 1.08995 * 117.50041 * 214.96843 * 27 9 7 45 45 H 1.08999 * 117.49517 * 359.97438 * 27 9 7 46 46 H 1.08995 * 117.50200 * 359.97438 * 28 9 7 47 47 H 1.09007 * 117.49634 * 144.97484 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0773 -1.1983 -0.1237 9 6 1.2610 -2.4933 0.1745 10 6 0.5819 -2.6884 1.5317 11 7 1.5534 -3.2176 2.4922 12 6 1.1547 -3.5647 3.7319 13 8 -0.0221 -3.5222 4.0250 14 6 2.1613 -4.0078 4.7439 15 8 3.3262 -4.1312 4.4272 16 7 1.7752 -4.2702 6.0083 17 6 2.6613 -4.7113 7.0963 18 6 1.7885 -4.8725 8.3477 19 1 1.8465 -3.9470 8.9204 20 6 2.2443 -5.9984 9.2288 21 6 1.7712 -7.3659 8.8398 22 7 0.3381 -7.3517 8.5373 23 6 0.0650 -6.4561 7.4077 24 6 0.3604 -5.0120 7.8142 25 1 -0.3723 -4.6427 8.5318 26 6 0.4022 -4.1546 6.5217 27 6 0.5636 -3.0789 -1.0550 28 6 1.8357 -3.7336 -0.5127 29 1 -0.4849 0.8368 -0.0733 30 1 -0.2448 -3.3909 1.4266 31 1 0.2023 -1.7311 1.8890 32 1 2.4835 -3.3182 2.2359 33 1 3.1201 -5.6656 6.8379 34 1 3.4319 -3.9615 7.2749 35 1 3.3342 -6.0161 9.2289 36 1 1.9072 -5.7979 10.2458 37 1 1.9574 -8.0611 9.6585 38 1 2.3200 -7.6963 7.9579 39 1 -0.0012 -8.2834 8.3504 40 1 -0.9824 -6.5449 7.1193 41 1 0.6978 -6.7324 6.5643 42 1 0.1730 -3.1138 6.7504 43 1 -0.3064 -4.5439 5.7906 44 1 -0.3788 -3.6031 -0.8970 45 1 0.6422 -2.5242 -1.9900 46 1 2.7513 -3.6098 -1.0909 47 1 1.7304 -4.6886 0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335174480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:20 Heat of formation + Delta-G solvation = -59.082079 kcal Electronic energy + Delta-G solvation = -27780.544455 eV Core-core repulsion = 23962.899443 eV Total energy + Delta-G solvation = -3817.645012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.10997 -40.74218 -39.40384 -38.51739 -36.96095 -35.03325 -34.08042 -33.43636 -32.43281 -29.26952 -28.58703 -27.50019 -26.51695 -24.66362 -23.46928 -23.00539 -22.79230 -21.34167 -20.81185 -19.86577 -18.83069 -18.03302 -17.91748 -17.67453 -17.33379 -16.71756 -16.58618 -16.32621 -15.93452 -15.80499 -15.46109 -15.00924 -14.86824 -14.45084 -14.39051 -14.28365 -13.98512 -13.68748 -13.62579 -13.47345 -13.25620 -12.98537 -12.95198 -12.81917 -12.62058 -12.39167 -12.23163 -12.08104 -11.67009 -11.48135 -11.41614 -11.21357 -11.01816 -10.67400 -10.55124 -10.14119 -10.06848 -9.87213 -9.42210 -8.14321 -6.25250 0.31301 1.22143 1.39562 1.43280 1.51626 2.09826 2.39916 2.47564 3.09724 3.14482 3.25743 3.47784 3.55433 3.60639 3.70465 4.05233 4.15490 4.15727 4.29861 4.36619 4.45638 4.48198 4.56321 4.58564 4.59811 4.64885 4.69734 4.73617 4.87045 4.91136 4.95835 4.98905 5.01765 5.08210 5.16968 5.21939 5.28747 5.33493 5.38518 5.51428 5.58623 5.77322 5.96644 6.02358 6.26016 6.33519 6.47019 6.64566 6.79463 6.95627 7.42270 8.92959 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021430 B = 0.002887 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.280203 B = 9697.119753 C =10056.690764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.029 3.971 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.005 3.995 10 C 0.179 3.821 11 N -0.674 5.674 12 C 0.498 3.502 13 O -0.545 6.545 14 C 0.520 3.480 15 O -0.546 6.546 16 N -0.585 5.585 17 C 0.106 3.894 18 C -0.082 4.082 19 H 0.093 0.907 20 C -0.103 4.103 21 C 0.056 3.944 22 N -0.684 5.684 23 C 0.063 3.937 24 C -0.079 4.079 25 H 0.120 0.880 26 C 0.097 3.903 27 C -0.166 4.166 28 C -0.178 4.178 29 H 0.262 0.738 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.413 0.587 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.017 0.983 39 H 0.352 0.648 40 H 0.082 0.918 41 H 0.014 0.986 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.850 -13.611 19.490 23.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.173 4.173 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.005 3.995 10 C 0.056 3.944 11 N -0.324 5.324 12 C 0.278 3.722 13 O -0.424 6.424 14 C 0.303 3.697 15 O -0.424 6.424 16 N -0.318 5.318 17 C -0.015 4.015 18 C -0.102 4.102 19 H 0.112 0.888 20 C -0.141 4.141 21 C -0.074 4.074 22 N -0.316 5.316 23 C -0.067 4.067 24 C -0.098 4.098 25 H 0.138 0.862 26 C -0.026 4.026 27 C -0.204 4.204 28 C -0.216 4.216 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.249 0.751 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.035 0.965 39 H 0.170 0.830 40 H 0.100 0.900 41 H 0.033 0.967 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.104 0.896 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.352 -13.008 20.000 23.896 hybrid contribution 0.977 0.661 -1.523 1.926 sum 2.329 -12.347 18.478 22.345 Atomic orbital electron populations 1.70055 1.07003 1.27585 1.49332 1.25638 0.95519 1.01852 0.94254 0.85725 0.78850 0.79895 0.78262 1.20019 1.21170 1.19472 1.20733 0.93291 0.90077 1.50844 0.92455 1.19061 0.99348 0.92314 0.88823 1.20785 0.89140 0.96423 0.88051 1.45922 1.14367 1.60875 1.11273 1.20198 0.88596 0.79583 0.83813 1.90664 1.18244 1.54044 1.79422 1.19799 0.87821 0.79164 0.82886 1.90731 1.19108 1.53076 1.79513 1.48214 1.12118 1.63601 1.07865 1.22254 0.93468 1.00108 0.85670 1.20974 0.93485 1.01411 0.94281 0.88831 1.20214 1.01462 0.92561 0.99822 1.21346 0.87775 0.97987 1.00256 1.60392 1.16193 1.14552 1.40429 1.21875 1.01052 0.92544 0.91190 1.22044 0.97866 0.94700 0.95179 0.86164 1.22768 0.82034 1.01209 0.96548 1.22678 0.94784 1.03701 0.99245 1.22903 0.97204 0.96352 1.05098 0.92884 0.93447 0.93099 0.75099 0.91489 0.90563 0.90306 0.89781 0.88805 0.96492 0.82965 0.89961 0.96734 0.90734 0.89488 0.90549 0.91231 0.89575 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.46 12.59 21.45 0.27 -50.19 16 2 C 0.03 1.53 5.23 84.66 0.44 1.97 16 3 Si 0.95 42.82 29.55 68.60 2.03 44.85 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.51 -26.97 8.83 25.60 0.23 -26.74 16 8 H 0.06 3.00 7.82 -2.91 -0.02 2.98 16 9 C 0.01 0.25 1.32 -52.93 -0.07 0.18 16 10 C 0.18 8.27 5.53 86.38 0.48 8.75 16 11 N -0.67 -27.62 5.45 -464.40 -2.53 -30.15 16 12 C 0.50 19.28 7.84 87.27 0.68 19.97 16 13 O -0.54 -22.25 13.80 -3.25 -0.04 -22.29 16 14 C 0.52 18.03 7.91 87.27 0.69 18.72 16 15 O -0.55 -20.87 16.80 -3.24 -0.05 -20.93 16 16 N -0.58 -15.94 3.32 -815.44 -2.70 -18.64 16 17 C 0.11 2.20 6.24 86.41 0.54 2.74 16 18 C -0.08 -1.20 2.69 -11.57 -0.03 -1.23 16 19 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 20 C -0.10 -1.14 5.19 28.63 0.15 -0.99 16 21 C 0.06 0.66 6.48 85.37 0.55 1.21 16 22 N -0.68 -9.12 6.87 -521.03 -3.58 -12.70 16 23 C 0.06 1.05 5.55 86.30 0.48 1.52 16 24 C -0.08 -1.28 3.54 -10.06 -0.04 -1.32 16 25 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 26 C 0.10 2.26 5.32 87.02 0.46 2.73 16 27 C -0.17 -7.35 9.88 30.59 0.30 -7.05 16 28 C -0.18 -7.16 9.78 30.59 0.30 -6.86 16 29 H 0.26 14.07 8.32 -92.71 -0.77 13.30 16 30 H 0.05 2.16 7.87 -2.39 -0.02 2.14 16 31 H 0.05 2.71 7.26 -2.39 -0.02 2.70 16 32 H 0.41 16.45 7.89 -92.71 -0.73 15.72 16 33 H 0.07 1.43 7.93 -2.39 -0.02 1.41 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 0.74 7.97 -2.39 -0.02 0.72 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.02 0.24 8.09 -2.39 -0.02 0.22 16 39 H 0.35 3.77 8.89 -89.69 -0.80 2.97 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.01 0.30 7.89 -2.39 -0.02 0.28 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.09 2.37 6.02 -2.39 -0.01 2.35 16 44 H 0.08 3.19 8.06 -2.39 -0.02 3.17 16 45 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 46 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 47 H 0.09 3.19 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -62.72 376.44 -2.00 -64.72 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.54 Total: 31.74 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 5.17 Total: 13.60 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -8.55 Total: -111.68 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.10 Total: -43.22 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -62.72 -2.00 -64.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335174480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.637 kcal (2) G-P(sol) polarization free energy of solvation -62.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds