Wall clock time and date at job start Fri Apr 10 2020 18:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 119.99868 * 2 1 4 4 H 1.48498 * 109.47235 * 240.00240 * 3 2 1 5 5 H 1.48497 * 109.47315 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46941 * 120.00594 * 3 2 1 7 7 C 1.38950 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99453 * 179.97438 * 7 2 1 9 9 N 1.37086 * 120.00235 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00435 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99556 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00546 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47160 * 180.02562 * 12 10 9 14 14 C 1.46904 * 110.99704 * 180.02562 * 13 12 10 15 15 H 1.08996 * 112.85297 * 23.80174 * 14 13 12 16 16 C 1.53781 * 113.61321 * 155.00207 * 14 13 12 17 17 C 1.53786 * 87.17350 * 139.93872 * 16 14 13 18 18 H 1.08993 * 113.61491 * 89.15923 * 17 16 14 19 19 C 1.52999 * 113.61361 * 220.06273 * 17 16 14 20 20 N 1.46494 * 109.47391 * 184.99937 * 19 17 16 21 21 C 1.34772 * 120.00463 * 180.02562 * 20 19 17 22 22 O 1.21281 * 119.99889 * 359.97438 * 21 20 19 23 23 C 1.50699 * 120.00326 * 180.02562 * 21 20 19 24 24 H 1.08998 * 115.55046 * 34.32306 * 23 21 20 25 25 C 1.53002 * 117.49749 * 248.62004 * 23 21 20 26 26 C 1.52995 * 59.99856 * 252.50828 * 25 23 21 27 27 C 1.52988 * 138.59203 * 130.89251 * 26 25 23 28 28 C 1.52997 * 60.00219 * 130.89620 * 27 26 25 29 29 C 1.53782 * 113.61210 * 252.49938 * 14 13 12 30 30 H 0.96998 * 120.00171 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00199 * 0.02562 * 9 7 2 32 32 H 1.09009 * 109.47134 * 60.00245 * 12 10 9 33 33 H 1.08999 * 109.47622 * 300.00716 * 12 10 9 34 34 H 1.00898 * 110.99931 * 303.95392 * 13 12 10 35 35 H 1.09002 * 113.61445 * 254.52871 * 16 14 13 36 36 H 1.09002 * 113.61408 * 25.34602 * 16 14 13 37 37 H 1.09002 * 109.47053 * 305.00261 * 19 17 16 38 38 H 1.09004 * 109.47121 * 64.99898 * 19 17 16 39 39 H 0.97000 * 119.99680 * 359.97438 * 20 19 17 40 40 H 1.09004 * 117.50174 * 359.97438 * 25 23 21 41 41 H 1.09000 * 117.50119 * 145.02037 * 25 23 21 42 42 H 1.09008 * 117.50079 * 238.38487 * 27 26 25 43 43 H 1.08998 * 117.50290 * 23.40448 * 27 26 25 44 44 H 1.09000 * 117.50051 * 252.51309 * 28 27 26 45 45 H 1.08998 * 117.52141 * 107.47941 * 28 27 26 46 46 H 1.08997 * 113.61668 * 334.56534 * 29 14 13 47 47 H 1.08998 * 113.61674 * 105.39043 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0010 13 7 2.1984 -5.9795 -0.0017 14 6 1.4980 -7.2708 -0.0018 15 1 0.4882 -7.2047 -0.4067 16 6 2.3267 -8.4209 -0.5979 17 6 1.7649 -9.3071 0.5264 18 1 0.8277 -9.7996 0.2671 19 6 2.7962 -10.2662 1.1241 20 7 2.1407 -11.1441 2.0966 21 6 2.8584 -12.0763 2.7540 22 8 4.0469 -12.1889 2.5401 23 6 2.1839 -12.9798 3.7540 24 1 1.1576 -13.2600 3.5170 25 6 2.5430 -12.7929 5.2295 26 6 3.0529 -14.0175 4.4672 27 6 4.3704 -14.7614 4.2408 28 6 3.1143 -15.5359 4.6445 29 6 1.5774 -8.0147 1.3418 30 1 -0.4850 0.8400 0.0004 31 1 0.3534 -2.3906 -0.0005 32 1 0.6161 -4.9205 -0.8904 33 1 0.6180 -4.9209 0.8896 34 1 2.8326 -5.9124 -0.7836 35 1 2.0027 -8.7218 -1.5942 36 1 3.4032 -8.2629 -0.5327 37 1 3.2356 -10.8687 0.3290 38 1 3.5794 -9.6939 1.6213 39 1 1.1902 -11.0539 2.2679 40 1 3.2673 -12.0168 5.4769 41 1 1.7528 -12.9502 5.9636 42 1 4.7185 -14.8673 3.2132 43 1 5.1513 -14.6422 4.9918 44 1 3.0686 -15.9262 5.6612 45 1 2.6354 -16.1513 3.8828 46 1 2.4491 -7.7463 1.9386 47 1 0.6490 -7.9864 1.9121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488775425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:34 Heat of formation + Delta-G solvation = 4.496382 kcal Electronic energy + Delta-G solvation = -25379.672537 eV Core-core repulsion = 21564.784494 eV Total energy + Delta-G solvation = -3814.888043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.36941 -39.39777 -38.10987 -37.70254 -35.03519 -34.03596 -33.27221 -32.88332 -31.19693 -28.51130 -26.45632 -25.75805 -24.40569 -23.69607 -22.75090 -21.55859 -20.90591 -19.84031 -19.38773 -19.02587 -17.86769 -17.37723 -16.57625 -16.01388 -15.77951 -15.45437 -15.31517 -15.24776 -14.92536 -14.60128 -14.36888 -14.30289 -13.82307 -13.53972 -13.37578 -12.86405 -12.53411 -12.42186 -12.27236 -12.06805 -11.84157 -11.62683 -11.52869 -11.49594 -11.03323 -10.94457 -10.75043 -10.60932 -10.51417 -10.43806 -10.38225 -10.35298 -10.20212 -9.93030 -9.49477 -9.28250 -8.43465 -8.06003 -7.95197 -6.41149 -3.81940 2.22476 2.74520 3.20736 3.26211 3.30866 3.33008 3.44725 3.88996 3.91859 4.10903 4.28662 4.33721 4.40211 4.42653 4.56444 4.68369 4.75773 4.75919 5.00906 5.06460 5.14901 5.21265 5.24484 5.25215 5.27478 5.29051 5.29834 5.50685 5.54550 5.58302 5.63280 5.68452 5.78158 5.81318 5.81913 5.93358 5.96119 6.10527 6.20555 6.25510 6.39095 7.24443 7.30147 7.55562 7.68124 7.99540 8.06903 8.62115 9.18489 9.55025 10.06748 10.76533 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.030293 B = 0.001596 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.071560 B =17538.201518 C =17774.216683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.656 5.656 14 C 0.059 3.941 15 H 0.071 0.929 16 C -0.132 4.132 17 C -0.125 4.125 18 H 0.094 0.906 19 C 0.132 3.868 20 N -0.725 5.725 21 C 0.538 3.462 22 O -0.534 6.534 23 C -0.143 4.143 24 H 0.123 0.877 25 C -0.100 4.100 26 C -0.203 4.203 27 C -0.113 4.113 28 C -0.130 4.130 29 C -0.120 4.120 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.350 0.650 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.401 0.599 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -28.450 5.952 29.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.289 5.289 14 C -0.051 4.051 15 H 0.089 0.911 16 C -0.170 4.170 17 C -0.144 4.144 18 H 0.112 0.888 19 C 0.009 3.991 20 N -0.376 5.376 21 C 0.324 3.676 22 O -0.411 6.411 23 C -0.164 4.164 24 H 0.141 0.859 25 C -0.137 4.137 26 C -0.203 4.203 27 C -0.150 4.150 28 C -0.167 4.167 29 C -0.159 4.159 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.171 0.829 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.235 0.765 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.962 -28.310 6.445 29.051 hybrid contribution -1.275 1.005 -0.910 1.861 sum -2.237 -27.305 5.534 27.950 Atomic orbital electron populations 1.69602 1.05934 1.28241 1.50599 1.25255 0.95631 0.99703 0.97307 0.85914 0.78756 0.80444 0.79082 1.19922 1.20981 1.19887 1.19663 0.93367 0.82285 1.47682 0.87980 1.41857 1.09175 1.04608 1.64408 1.19843 0.88405 0.84760 0.84442 1.90524 1.13779 1.87083 1.55379 1.21730 0.94430 0.91072 1.01029 1.60239 1.18353 0.99475 1.50790 1.22978 0.96598 0.88512 0.97058 0.91115 1.23193 1.01258 0.95212 0.97348 1.22675 0.98794 0.94698 0.98281 0.88825 1.21387 0.95211 0.91377 0.91150 1.45952 1.12799 1.35940 1.42913 1.19691 0.86823 0.80246 0.80835 1.90711 1.15217 1.70120 1.65015 1.21973 0.99774 1.00178 0.94473 0.85886 1.22674 1.02218 0.97436 0.91354 1.21156 1.03020 0.91400 1.04751 1.22601 0.89916 0.99618 1.02839 1.22769 1.01376 0.89957 1.02576 1.23222 1.02668 0.93285 0.96681 0.91843 0.77482 0.93930 0.89704 0.82916 0.91302 0.88820 0.91537 0.90934 0.76510 0.87947 0.87500 0.88200 0.88466 0.88296 0.88558 0.88895 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.45 9.68 -14.94 -0.14 -8.59 16 8 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.56 -14.38 5.29 -10.97 -0.06 -14.44 16 10 C 0.44 10.46 7.82 -10.99 -0.09 10.38 16 11 O -0.58 -16.01 15.78 5.54 0.09 -15.92 16 12 C 0.05 0.88 6.01 -4.98 -0.03 0.85 16 13 N -0.66 -10.44 6.18 -107.13 -0.66 -11.10 16 14 C 0.06 0.69 4.14 -66.90 -0.28 0.41 16 15 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 16 C -0.13 -1.26 7.21 -25.92 -0.19 -1.44 16 17 C -0.13 -1.02 3.76 -89.71 -0.34 -1.36 16 18 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 19 C 0.13 1.22 5.51 -4.05 -0.02 1.20 16 20 N -0.72 -5.94 5.56 -60.30 -0.33 -6.28 16 21 C 0.54 5.58 7.61 -10.99 -0.08 5.50 16 22 O -0.53 -7.71 16.24 5.56 0.09 -7.62 16 23 C -0.14 -1.10 6.19 -91.77 -0.57 -1.66 16 24 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 25 C -0.10 -0.70 10.23 -26.73 -0.27 -0.97 16 26 C -0.20 -1.65 5.05 -154.52 -0.78 -2.43 16 27 C -0.11 -0.92 10.16 -26.74 -0.27 -1.19 16 28 C -0.13 -0.81 10.53 -26.73 -0.28 -1.09 16 29 C -0.12 -1.24 7.44 -25.82 -0.19 -1.44 16 30 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 32 H 0.04 0.67 8.13 -51.92 -0.42 0.25 16 33 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.35 5.78 8.24 -39.29 -0.32 5.46 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 39 H 0.40 2.21 8.47 -40.82 -0.35 1.87 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 1.15 7.90 -51.93 -0.41 0.74 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 397.46 15.07 5.99 5.99 Total: -1.00 -33.88 397.46 -10.46 -44.35 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -7.64 Total: 14.10 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -3.63 Total: -1.33 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.33 Total: -55.68 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.18 Total: -23.55 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.88 -10.46 -44.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488775425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.843 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds