Wall clock time and date at job start Fri Apr 10 2020 18:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48498 * 109.47162 * 89.99531 * 3 2 1 5 5 H 1.48491 * 109.47070 * 209.99709 * 3 2 1 6 6 H 1.48499 * 109.46933 * 329.99980 * 3 2 1 7 7 C 1.38950 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99915 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99992 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00142 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99844 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47286 * 186.13259 * 12 10 9 14 14 C 1.47893 * 111.00398 * 176.64056 * 13 12 10 15 15 C 1.54004 * 107.06144 * 214.16044 * 14 13 12 16 16 C 1.54589 * 105.13670 * 1.22406 * 15 14 13 17 17 H 1.09005 * 110.72510 * 263.42122 * 16 15 14 18 18 N 1.46502 * 110.72397 * 140.31748 * 16 15 14 19 19 C 1.34777 * 120.00160 * 86.45115 * 18 16 15 20 20 O 1.21280 * 119.99954 * 0.02562 * 19 18 16 21 21 C 1.50697 * 119.99919 * 180.02562 * 19 18 16 22 22 C 1.53001 * 119.29568 * 250.95004 * 21 19 18 23 23 C 1.53874 * 121.32778 * 179.11984 * 21 19 18 24 24 H 1.08997 * 121.33678 * 359.42784 * 23 21 19 25 25 C 1.54271 * 106.59621 * 221.93433 * 23 21 19 26 26 C 1.54893 * 104.19499 * 23.60827 * 25 23 21 27 27 C 1.54263 * 117.41281 * 45.29028 * 21 19 18 28 28 C 1.48540 * 110.99469 * 59.24357 * 13 12 10 29 29 H 0.96996 * 120.00239 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99943 * 0.02562 * 9 7 2 31 31 H 1.08991 * 109.47700 * 306.13578 * 12 10 9 32 32 H 1.09002 * 109.46859 * 66.14292 * 12 10 9 33 33 H 1.08997 * 109.91938 * 333.51194 * 14 13 12 34 34 H 1.09004 * 109.92170 * 94.80624 * 14 13 12 35 35 H 1.08995 * 110.30812 * 120.13988 * 15 14 13 36 36 H 1.08995 * 110.30468 * 242.20756 * 15 14 13 37 37 H 0.97003 * 119.99459 * 266.45474 * 18 16 15 38 38 H 1.08997 * 117.46375 * 356.29540 * 22 21 19 39 39 H 1.09003 * 117.46156 * 141.09631 * 22 21 19 40 40 H 1.08999 * 110.48486 * 264.93034 * 25 23 21 41 41 H 1.08995 * 110.60153 * 142.34087 * 25 23 21 42 42 H 1.09003 * 110.75253 * 203.74319 * 26 25 23 43 43 H 1.08994 * 110.91156 * 80.44745 * 26 25 23 44 44 H 1.08999 * 110.48791 * 235.04314 * 27 21 19 45 45 H 1.08997 * 110.49134 * 357.56052 * 27 21 19 46 46 H 1.08990 * 110.67087 * 278.15619 * 28 13 12 47 47 H 1.08997 * 110.66411 * 41.29088 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 1.4001 5 1 3.5456 1.4401 -0.6999 6 1 1.4456 2.6526 -0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0001 12 6 5.5607 -2.3705 0.0011 13 7 6.0504 -3.7475 -0.1469 14 6 7.5266 -3.7789 -0.2316 15 6 7.9001 -4.9298 -1.1844 16 6 6.5504 -5.5203 -1.6527 17 1 6.2810 -6.3899 -1.0531 18 7 6.6027 -5.8695 -3.0746 19 6 7.0670 -7.0761 -3.4555 20 8 7.4411 -7.8729 -2.6213 21 6 7.1214 -7.4350 -4.9181 22 6 6.1452 -8.4757 -5.4704 23 6 7.6644 -8.7958 -5.3883 24 1 8.0336 -9.5350 -4.6775 25 6 8.5387 -8.5167 -6.6284 26 6 8.9604 -7.0347 -6.4700 27 6 7.6845 -6.3765 -5.8887 28 6 5.5592 -4.3542 -1.4107 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 0.0014 31 1 5.9241 -1.7646 -0.8288 32 1 5.9240 -1.9549 0.9410 33 1 7.8959 -2.8335 -0.6288 34 1 7.9515 -3.9614 0.7555 35 1 8.4621 -4.5480 -2.0367 36 1 8.4821 -5.6847 -0.6558 37 1 6.3032 -5.2323 -3.7418 38 1 5.4803 -8.9677 -4.7605 39 1 5.7252 -8.2956 -6.4599 40 1 7.9597 -8.6531 -7.5418 41 1 9.4153 -9.1644 -6.6332 42 1 9.2133 -6.5997 -7.4370 43 1 9.7948 -6.9399 -5.7753 44 1 6.9677 -6.1672 -6.6828 45 1 7.9356 -5.4617 -5.3519 46 1 4.5442 -4.7314 -1.2873 47 1 5.6064 -3.6335 -2.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490550947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:37 Heat of formation + Delta-G solvation = -32.971981 kcal Electronic energy + Delta-G solvation = -27071.931291 eV Core-core repulsion = 23255.418498 eV Total energy + Delta-G solvation = -3816.512793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77013 -39.46967 -38.33559 -37.40455 -34.52353 -33.92685 -31.95372 -31.74781 -31.11776 -29.09941 -28.15372 -26.71697 -24.21580 -23.64985 -22.50289 -21.31062 -20.91998 -20.38191 -19.46807 -19.29152 -18.29811 -17.42445 -16.58408 -16.18581 -15.66273 -15.40809 -15.20861 -14.91054 -14.52787 -14.40041 -14.04463 -13.72636 -13.65856 -13.44488 -13.29964 -13.02716 -12.88327 -12.53266 -12.38199 -12.15178 -11.84424 -11.76368 -11.53607 -11.48788 -11.40253 -11.33005 -11.29165 -10.99942 -10.70379 -10.65904 -10.62240 -10.05360 -10.00534 -9.79152 -9.58455 -9.14223 -8.59176 -8.23178 -8.12437 -6.34037 -3.85596 2.38601 2.91865 2.99181 3.04308 3.12528 3.29240 3.69482 3.99854 4.06180 4.08169 4.24283 4.37983 4.48947 4.64134 4.72203 4.82424 4.88068 4.96300 5.03296 5.06423 5.18478 5.18742 5.28567 5.30987 5.36888 5.41107 5.45362 5.51661 5.54993 5.65687 5.67169 5.71490 5.72268 5.82848 5.83670 5.89326 5.99610 6.01473 6.06976 6.36101 6.42884 7.01722 7.06766 7.40616 7.55061 8.11128 8.13116 8.56686 8.92010 9.39025 9.79309 10.78985 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.002480 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.428415 B =11286.933096 C =11752.050338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.450 3.550 11 O -0.560 6.560 12 C 0.035 3.965 13 N -0.490 5.490 14 C 0.035 3.965 15 C -0.139 4.139 16 C 0.140 3.860 17 H 0.103 0.897 18 N -0.716 5.716 19 C 0.558 3.442 20 O -0.539 6.539 21 C -0.178 4.178 22 C -0.122 4.122 23 C -0.129 4.129 24 H 0.120 0.880 25 C -0.097 4.097 26 C -0.123 4.123 27 C -0.088 4.088 28 C 0.036 3.964 29 H 0.274 0.726 30 H 0.370 0.630 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.401 0.599 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.115 0.885 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.632 -9.436 -13.302 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.433 4.433 8 H 0.138 0.862 9 N -0.229 5.229 10 C 0.236 3.764 11 O -0.441 6.441 12 C -0.097 4.097 13 N -0.214 5.214 14 C -0.094 4.094 15 C -0.178 4.178 16 C 0.035 3.965 17 H 0.121 0.879 18 N -0.366 5.366 19 C 0.344 3.656 20 O -0.416 6.416 21 C -0.181 4.181 22 C -0.159 4.159 23 C -0.148 4.148 24 H 0.138 0.862 25 C -0.134 4.134 26 C -0.160 4.160 27 C -0.125 4.125 28 C -0.092 4.092 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.235 0.765 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.133 0.867 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 19.094 -10.860 -12.212 25.133 hybrid contribution 0.715 2.472 -0.844 2.708 sum 19.810 -8.388 -13.056 25.164 Atomic orbital electron populations 1.69618 1.05636 1.27522 1.49253 1.25042 0.95493 0.97978 0.97643 0.86674 0.79704 0.84066 0.78943 1.19562 1.19584 1.20181 1.19426 0.79168 0.96636 1.48110 0.86237 1.42211 1.07566 1.06109 1.67050 1.19604 0.88008 0.84603 0.84199 1.90537 1.69354 1.30723 1.53518 1.22135 0.95645 0.89812 1.02091 1.64485 1.05369 1.17193 1.34369 1.22923 0.89103 0.97306 1.00040 1.22791 0.97771 0.98063 0.99182 1.21948 0.94808 0.98789 0.80949 0.87930 1.45929 1.65406 1.16898 1.08410 1.19334 0.76359 0.81284 0.88645 1.90697 1.47844 1.49717 1.53314 1.22425 1.08710 0.93996 0.92993 1.23498 0.91729 0.98458 1.02216 1.23751 0.94575 0.97064 0.99382 0.86204 1.21997 0.98759 0.96376 0.96309 1.22673 0.97522 0.94887 1.00937 1.21953 0.97024 0.96430 0.97126 1.23550 1.00862 0.94454 0.90375 0.91586 0.79719 0.93318 0.88734 0.93747 0.90025 0.91394 0.90516 0.76478 0.87702 0.87894 0.91017 0.90865 0.90956 0.91185 0.90480 0.90973 0.86732 0.93947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.96 55.50 0.77 -24.69 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.08 27.74 -169.99 -4.71 14.37 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.27 -5.31 6.52 56.52 0.37 -4.95 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 9 N -0.59 -13.79 5.09 -10.97 -0.06 -13.85 16 10 C 0.45 10.01 7.42 -10.99 -0.08 9.93 16 11 O -0.56 -14.60 13.87 5.55 0.08 -14.52 16 12 C 0.04 0.58 5.30 -4.98 -0.03 0.55 16 13 N -0.49 -7.80 5.11 -231.89 -1.18 -8.99 16 14 C 0.03 0.42 6.70 -2.75 -0.02 0.41 16 15 C -0.14 -1.64 6.67 -25.37 -0.17 -1.81 16 16 C 0.14 1.88 3.35 -66.07 -0.22 1.66 16 17 H 0.10 1.61 7.69 -51.93 -0.40 1.21 16 18 N -0.72 -8.22 4.97 -52.00 -0.26 -8.48 16 19 C 0.56 7.03 7.41 -10.99 -0.08 6.94 16 20 O -0.54 -8.79 16.51 5.56 0.09 -8.70 16 21 C -0.18 -1.68 2.60 -154.54 -0.40 -2.08 16 22 C -0.12 -1.01 10.00 -25.42 -0.25 -1.27 16 23 C -0.13 -1.12 6.64 -88.19 -0.59 -1.71 16 24 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 25 C -0.10 -0.63 6.64 -25.07 -0.17 -0.80 16 26 C -0.12 -0.79 6.91 -24.73 -0.17 -0.96 16 27 C -0.09 -0.63 6.18 -25.07 -0.16 -0.78 16 28 C 0.04 0.55 5.19 -1.89 -0.01 0.54 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 31 H 0.05 0.70 7.98 -51.93 -0.41 0.28 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.04 0.48 7.68 -51.93 -0.40 0.08 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.72 8.05 -51.93 -0.42 0.31 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.40 3.78 8.04 -40.82 -0.33 3.45 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.51 7.60 -51.93 -0.39 0.11 16 46 H 0.11 2.18 6.43 -51.93 -0.33 1.84 16 47 H 0.04 0.61 7.88 -51.93 -0.41 0.20 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -33.58 377.02 -9.72 -43.30 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -7.54 Total: 12.88 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.59 Total: 3.01 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.72 Total: -56.01 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.17 Total: -23.22 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.37 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.58 -9.72 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490550947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.328 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds