Wall clock time and date at job start Fri Apr 10 2020 18:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00077 * 2 1 4 4 H 1.48498 * 109.47162 * 89.99531 * 3 2 1 5 5 H 1.48491 * 109.47070 * 209.99709 * 3 2 1 6 6 H 1.48499 * 109.46933 * 329.99980 * 3 2 1 7 7 C 1.38950 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99915 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00059 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99992 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00142 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99844 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47286 * 186.13259 * 12 10 9 14 14 C 1.47893 * 111.00398 * 176.64056 * 13 12 10 15 15 C 1.54004 * 107.06144 * 214.16044 * 14 13 12 16 16 C 1.54589 * 105.13670 * 1.22406 * 15 14 13 17 17 H 1.09005 * 110.72510 * 263.42122 * 16 15 14 18 18 N 1.46502 * 110.72397 * 140.31748 * 16 15 14 19 19 C 1.34777 * 120.00160 * 86.45115 * 18 16 15 20 20 O 1.21280 * 119.99954 * 0.02562 * 19 18 16 21 21 C 1.50697 * 119.99919 * 180.02562 * 19 18 16 22 22 C 1.53001 * 119.29568 * 250.95004 * 21 19 18 23 23 C 1.53874 * 121.32778 * 179.11984 * 21 19 18 24 24 H 1.08997 * 121.33678 * 359.42784 * 23 21 19 25 25 C 1.54271 * 106.59621 * 221.93433 * 23 21 19 26 26 C 1.54893 * 104.19499 * 23.60827 * 25 23 21 27 27 C 1.54263 * 117.41281 * 45.29028 * 21 19 18 28 28 C 1.48540 * 110.99469 * 59.24357 * 13 12 10 29 29 H 0.96996 * 120.00239 * 0.02562 * 1 2 3 30 30 H 0.96997 * 119.99943 * 0.02562 * 9 7 2 31 31 H 1.08991 * 109.47700 * 306.13578 * 12 10 9 32 32 H 1.09002 * 109.46859 * 66.14292 * 12 10 9 33 33 H 1.08997 * 109.91938 * 333.51194 * 14 13 12 34 34 H 1.09004 * 109.92170 * 94.80624 * 14 13 12 35 35 H 1.08995 * 110.30812 * 120.13988 * 15 14 13 36 36 H 1.08995 * 110.30468 * 242.20756 * 15 14 13 37 37 H 0.97003 * 119.99459 * 266.45474 * 18 16 15 38 38 H 1.08997 * 117.46375 * 356.29540 * 22 21 19 39 39 H 1.09003 * 117.46156 * 141.09631 * 22 21 19 40 40 H 1.08999 * 110.48486 * 264.93034 * 25 23 21 41 41 H 1.08995 * 110.60153 * 142.34087 * 25 23 21 42 42 H 1.09003 * 110.75253 * 203.74319 * 26 25 23 43 43 H 1.08994 * 110.91156 * 80.44745 * 26 25 23 44 44 H 1.08999 * 110.48791 * 235.04314 * 27 21 19 45 45 H 1.08997 * 110.49134 * 357.56052 * 27 21 19 46 46 H 1.08990 * 110.67087 * 278.15619 * 28 13 12 47 47 H 1.08997 * 110.66411 * 41.29088 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 1.4001 5 1 3.5456 1.4401 -0.6999 6 1 1.4456 2.6526 -0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2033 0.0011 10 6 4.0537 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0001 12 6 5.5607 -2.3705 0.0011 13 7 6.0504 -3.7475 -0.1469 14 6 7.5266 -3.7789 -0.2316 15 6 7.9001 -4.9298 -1.1844 16 6 6.5504 -5.5203 -1.6527 17 1 6.2810 -6.3899 -1.0531 18 7 6.6027 -5.8695 -3.0746 19 6 7.0670 -7.0761 -3.4555 20 8 7.4411 -7.8729 -2.6213 21 6 7.1214 -7.4350 -4.9181 22 6 6.1452 -8.4757 -5.4704 23 6 7.6644 -8.7958 -5.3883 24 1 8.0336 -9.5350 -4.6775 25 6 8.5387 -8.5167 -6.6284 26 6 8.9604 -7.0347 -6.4700 27 6 7.6845 -6.3765 -5.8887 28 6 5.5592 -4.3542 -1.4107 29 1 -0.4850 0.8400 -0.0004 30 1 3.8648 -0.3633 0.0014 31 1 5.9241 -1.7646 -0.8288 32 1 5.9240 -1.9549 0.9410 33 1 7.8959 -2.8335 -0.6288 34 1 7.9515 -3.9614 0.7555 35 1 8.4621 -4.5480 -2.0367 36 1 8.4821 -5.6847 -0.6558 37 1 6.3032 -5.2323 -3.7418 38 1 5.4803 -8.9677 -4.7605 39 1 5.7252 -8.2956 -6.4599 40 1 7.9597 -8.6531 -7.5418 41 1 9.4153 -9.1644 -6.6332 42 1 9.2133 -6.5997 -7.4370 43 1 9.7948 -6.9399 -5.7753 44 1 6.9677 -6.1672 -6.6828 45 1 7.9356 -5.4617 -5.3519 46 1 4.5442 -4.7314 -1.2873 47 1 5.6064 -3.6335 -2.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490550947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:36 Heat of formation + Delta-G solvation = -58.749759 kcal Electronic energy + Delta-G solvation = -27073.049099 eV Core-core repulsion = 23255.418498 eV Total energy + Delta-G solvation = -3817.630601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65948 -40.76704 -39.61514 -38.63123 -36.06283 -35.50070 -33.76654 -32.57109 -32.28338 -29.95884 -29.09494 -28.18704 -25.87150 -24.56714 -23.21083 -22.50724 -21.73488 -21.29344 -21.17690 -20.35642 -20.07106 -18.24126 -17.84869 -17.58408 -16.78365 -16.73506 -16.41316 -16.22905 -15.81481 -15.42733 -15.34131 -14.86663 -14.79057 -14.42435 -14.28502 -14.23189 -14.04750 -13.98603 -13.86577 -13.27194 -13.02049 -12.92387 -12.74603 -12.51982 -12.41786 -12.32607 -12.06273 -12.02268 -11.97598 -11.86633 -11.73805 -11.48466 -11.35396 -10.75684 -10.69017 -10.37860 -10.25033 -10.16325 -9.37390 -8.40961 -6.01979 1.30141 1.36312 1.43011 1.44943 1.94502 1.95846 2.23378 2.56805 2.68380 3.15071 3.23962 3.43352 3.46657 3.59316 3.69300 3.76239 3.89092 4.00851 4.16038 4.22004 4.24352 4.32212 4.37135 4.40140 4.48444 4.52131 4.64180 4.66487 4.72207 4.79338 4.85638 4.90874 4.96010 5.00300 5.05198 5.13905 5.15321 5.19435 5.25807 5.37374 5.45974 5.52544 5.81713 5.90813 6.02321 6.46111 6.59724 6.88593 7.15684 7.39522 7.96772 8.76663 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.002480 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.428415 B =11286.933096 C =11752.050338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.229 1.229 6 H -0.276 1.276 7 C -0.327 4.327 8 H 0.054 0.946 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.607 6.607 12 C 0.047 3.953 13 N -0.518 5.518 14 C 0.040 3.960 15 C -0.128 4.128 16 C 0.146 3.854 17 H 0.069 0.931 18 N -0.705 5.705 19 C 0.552 3.448 20 O -0.584 6.584 21 C -0.187 4.187 22 C -0.117 4.117 23 C -0.134 4.134 24 H 0.099 0.901 25 C -0.092 4.092 26 C -0.121 4.121 27 C -0.083 4.083 28 C 0.043 3.957 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.413 0.587 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.249 -6.712 -15.148 28.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.785 3.215 4 H -0.183 1.183 5 H -0.152 1.152 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.237 3.763 11 O -0.491 6.491 12 C -0.084 4.084 13 N -0.243 5.243 14 C -0.087 4.087 15 C -0.167 4.167 16 C 0.040 3.960 17 H 0.088 0.912 18 N -0.356 5.356 19 C 0.340 3.660 20 O -0.464 6.464 21 C -0.190 4.190 22 C -0.154 4.154 23 C -0.152 4.152 24 H 0.117 0.883 25 C -0.129 4.129 26 C -0.158 4.158 27 C -0.121 4.121 28 C -0.085 4.085 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.104 0.896 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.250 0.750 38 H 0.107 0.893 39 H 0.146 0.854 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.086 0.914 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 22.740 -8.128 -14.076 27.952 hybrid contribution -0.500 1.432 -0.216 1.532 sum 22.240 -6.696 -14.293 27.271 Atomic orbital electron populations 1.69806 1.08190 1.29247 1.50321 1.26131 0.96465 1.02771 0.96096 0.85358 0.79533 0.76662 0.79914 1.18287 1.15216 1.20096 1.18978 0.81455 0.94859 1.50287 0.92763 1.42021 1.05802 1.07540 1.67842 1.20853 0.90766 0.83371 0.81356 1.90541 1.71305 1.32576 1.54693 1.22091 0.90296 0.90956 1.05082 1.64404 1.07992 1.17150 1.34780 1.22976 0.86316 0.98563 1.00864 1.22719 0.96369 0.97874 0.99784 1.21671 0.95648 0.96925 0.81739 0.91236 1.45830 1.64860 1.17049 1.07895 1.19958 0.75340 0.80768 0.89893 1.90671 1.49923 1.50952 1.54903 1.22500 1.09857 0.95363 0.91290 1.23577 0.91453 0.97491 1.02913 1.23839 0.95196 0.96093 1.00118 0.88311 1.22021 0.98640 0.96655 0.95570 1.22681 0.96756 0.94673 1.01681 1.22011 0.97596 0.95604 0.96874 1.23288 0.98872 0.95355 0.91029 0.91165 0.77458 0.89626 0.85826 0.90869 0.89088 0.89413 0.90951 0.75020 0.89265 0.85354 0.89369 0.90356 0.88891 0.92147 0.88746 0.90747 0.91435 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.96 21.66 0.30 -55.76 16 2 C -0.02 -0.88 5.50 84.93 0.47 -0.42 16 3 Si 0.97 37.99 27.74 68.60 1.90 39.90 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.23 -7.43 6.52 99.48 0.65 -6.78 16 6 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.33 -18.91 10.16 84.04 0.85 -18.06 16 8 H 0.05 3.77 7.39 -2.91 -0.02 3.75 16 9 N -0.59 -27.23 5.09 -306.99 -1.56 -28.80 16 10 C 0.45 19.87 7.42 87.65 0.65 20.52 16 11 O -0.61 -33.26 13.87 -3.07 -0.04 -33.31 16 12 C 0.05 1.40 5.30 85.56 0.45 1.85 16 13 N -0.52 -15.64 5.11 -887.57 -4.54 -20.17 16 14 C 0.04 0.84 6.70 86.45 0.58 1.42 16 15 C -0.13 -2.77 6.67 31.47 0.21 -2.56 16 16 C 0.15 3.95 3.35 46.20 0.15 4.11 16 17 H 0.07 2.34 7.69 -2.38 -0.02 2.32 16 18 N -0.71 -16.04 4.97 -436.83 -2.17 -18.21 16 19 C 0.55 14.13 7.41 87.66 0.65 14.78 16 20 O -0.58 -19.99 16.51 -3.03 -0.05 -20.04 16 21 C -0.19 -3.38 2.60 -52.21 -0.14 -3.51 16 22 C -0.12 -1.88 10.00 31.44 0.31 -1.56 16 23 C -0.13 -2.26 6.64 -9.22 -0.06 -2.32 16 24 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 25 C -0.09 -0.99 6.64 31.67 0.21 -0.78 16 26 C -0.12 -1.23 6.91 31.89 0.22 -1.01 16 27 C -0.08 -0.98 6.18 31.67 0.20 -0.79 16 28 C 0.04 1.33 5.19 86.65 0.45 1.78 16 29 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.39 14.71 5.76 -92.71 -0.53 14.18 16 31 H 0.09 1.98 7.98 -2.39 -0.02 1.97 16 32 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.07 1.18 7.68 -2.39 -0.02 1.16 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.41 7.31 8.04 -92.71 -0.75 6.57 16 38 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.07 0.85 7.60 -2.39 -0.02 0.83 16 46 H 0.07 2.74 6.43 -2.39 -0.02 2.72 16 47 H 0.06 1.57 7.88 -2.39 -0.02 1.56 16 Total: -1.00 -81.40 377.02 -1.30 -82.69 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -0.35 Total: 40.25 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.21 Total: 13.44 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -7.97 Total: -122.94 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -0.09 Total: -53.35 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.90 Total: 39.90 kcal Total: -81.40 -1.30 -82.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490550947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.945 kcal (2) G-P(sol) polarization free energy of solvation -81.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds