Wall clock time and date at job start Fri Apr 10 2020 18:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99659 * 3 2 1 5 5 H 1.48496 * 109.47530 * 30.00096 * 3 2 1 6 6 H 1.48501 * 109.47312 * 150.00340 * 3 2 1 7 7 C 1.38945 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 0.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 179.72366 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99955 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.09000 * 110.88872 * 308.87929 * 15 14 13 17 17 C 1.55151 * 111.00417 * 72.80738 * 15 14 13 18 18 C 1.54327 * 102.94416 * 153.57597 * 17 15 14 19 19 N 1.47019 * 107.26721 * 337.80251 * 18 17 15 20 20 C 1.34775 * 125.64760 * 178.90364 * 19 18 17 21 21 O 1.21285 * 120.00278 * 180.02562 * 20 19 18 22 22 C 1.50703 * 120.00033 * 0.04968 * 20 19 18 23 23 H 1.09002 * 115.55064 * 34.27013 * 22 20 19 24 24 C 1.52999 * 117.49599 * 248.60537 * 22 20 19 25 25 C 1.52988 * 59.99806 * 252.50909 * 24 22 20 26 26 C 1.52997 * 138.58745 * 130.89327 * 25 24 22 27 27 C 1.52994 * 138.58920 * 229.10738 * 25 24 22 28 28 C 1.47421 * 108.70601 * 358.94323 * 19 18 17 29 29 H 0.97004 * 120.00486 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 31 31 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 32 32 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 33 33 H 1.00895 * 111.00101 * 303.95589 * 13 12 10 34 34 H 1.08999 * 109.46830 * 300.00217 * 14 13 12 35 35 H 1.08991 * 109.46772 * 60.00099 * 14 13 12 36 36 H 1.09000 * 110.71956 * 271.93445 * 17 15 14 37 37 H 1.09002 * 110.72353 * 35.20870 * 17 15 14 38 38 H 1.09006 * 109.87902 * 218.38727 * 18 17 15 39 39 H 1.08996 * 110.01099 * 97.29310 * 18 17 15 40 40 H 1.09002 * 117.50083 * 359.97438 * 24 22 20 41 41 H 1.09002 * 117.50417 * 144.99430 * 24 22 20 42 42 H 1.09001 * 117.49690 * 238.37974 * 26 25 24 43 43 H 1.09003 * 117.50279 * 23.40578 * 26 25 24 44 44 H 1.09004 * 117.49660 * 336.59864 * 27 25 24 45 45 H 1.08995 * 117.50339 * 121.59362 * 27 25 24 46 46 H 1.08997 * 110.36891 * 265.29109 * 28 19 18 47 47 H 1.08999 * 110.46397 * 143.01240 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 -0.0052 10 6 4.0538 -2.3704 -0.0103 11 8 3.4473 -3.4208 -0.0104 12 6 5.5608 -2.3704 -0.0161 13 7 6.0504 -3.7553 -0.0204 14 6 7.5189 -3.7945 -0.0266 15 6 7.9902 -5.2501 -0.0316 16 1 7.5051 -5.8184 0.7620 17 6 7.7484 -5.9082 -1.4157 18 6 8.8270 -7.0107 -1.4675 19 7 9.8878 -6.6280 -0.5242 20 6 11.0006 -7.3417 -0.2618 21 8 11.8118 -6.9278 0.5392 22 6 11.2372 -8.6540 -0.9641 23 1 10.8761 -8.7094 -1.9911 24 6 11.1678 -9.9289 -0.1211 25 6 12.5190 -9.4165 -0.6233 26 6 13.9142 -9.1249 -0.0673 27 6 13.7569 -9.9583 -1.3408 28 6 9.5324 -5.3348 0.0877 29 1 -0.4851 0.8400 -0.0004 30 1 3.8648 -0.3632 -0.0056 31 1 5.9206 -1.8546 -0.9063 32 1 5.9274 -1.8585 0.8736 33 1 5.6779 -4.2730 0.7614 34 1 7.8920 -3.2891 -0.9174 35 1 7.8995 -3.2921 0.8625 36 1 6.7501 -6.3428 -1.4670 37 1 7.8971 -5.1852 -2.2178 38 1 9.2355 -7.0826 -2.4756 39 1 8.3966 -7.9678 -1.1729 40 1 10.9514 -9.8185 0.9415 41 1 10.7610 -10.8231 -0.5934 42 1 14.2965 -8.1097 -0.1743 43 1 14.2129 -9.6466 0.8420 44 1 13.9520 -11.0283 -1.2693 45 1 14.0356 -9.4917 -2.2856 46 1 10.0006 -4.5155 -0.4578 47 1 9.8335 -5.3133 1.1351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491837249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:44 Heat of formation + Delta-G solvation = -1.927251 kcal Electronic energy + Delta-G solvation = -25863.303658 eV Core-core repulsion = 22048.137065 eV Total energy + Delta-G solvation = -3815.166592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.54982 -38.86509 -38.37751 -37.28377 -35.47425 -33.93593 -33.10585 -31.91809 -31.61652 -29.71029 -27.63439 -25.51285 -24.10467 -22.87380 -22.82067 -22.75558 -20.73217 -20.24856 -19.37307 -18.85044 -18.33264 -17.50417 -16.68192 -15.95261 -15.79692 -15.60022 -15.37582 -15.19251 -14.91282 -14.70728 -14.26662 -13.98948 -13.77637 -13.50991 -13.23665 -13.03883 -12.83839 -12.61095 -12.46700 -12.11237 -12.05222 -11.89790 -11.84522 -11.77145 -11.26390 -11.21142 -11.02239 -10.85607 -10.61564 -10.60955 -10.51334 -10.38803 -10.00280 -9.98567 -9.58815 -8.91985 -8.61610 -8.21527 -8.16583 -6.32560 -3.84130 2.18263 2.55571 3.01297 3.05743 3.14055 3.31451 3.37946 3.72238 3.86941 3.92591 4.08863 4.20861 4.36755 4.37864 4.50164 4.61151 4.74340 4.91863 4.94893 5.01787 5.09451 5.14336 5.17876 5.22542 5.24107 5.26377 5.28834 5.36127 5.42803 5.49522 5.52603 5.56600 5.58841 5.66979 5.74563 5.78774 5.80207 5.91381 5.92925 6.02501 6.12611 7.03749 7.22327 7.52492 7.56785 7.90414 8.12934 8.58154 8.93433 9.40927 9.80990 10.80521 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.044384 B = 0.001728 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.700721 B =16199.910444 C =16551.019273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.048 3.952 13 N -0.667 5.667 14 C 0.070 3.930 15 C -0.097 4.097 16 H 0.087 0.913 17 C -0.116 4.116 18 C 0.097 3.903 19 N -0.616 5.616 20 C 0.556 3.444 21 O -0.536 6.536 22 C -0.138 4.138 23 H 0.123 0.877 24 C -0.099 4.099 25 C -0.203 4.203 26 C -0.113 4.113 27 C -0.129 4.129 28 C 0.112 3.888 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.351 0.649 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.069 0.931 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.986 -15.243 -3.009 30.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.447 6.447 12 C -0.085 4.085 13 N -0.299 5.299 14 C -0.060 4.060 15 C -0.116 4.116 16 H 0.105 0.895 17 C -0.153 4.153 18 C -0.026 4.026 19 N -0.350 5.350 20 C 0.345 3.655 21 O -0.413 6.413 22 C -0.159 4.159 23 H 0.141 0.859 24 C -0.136 4.136 25 C -0.204 4.204 26 C -0.150 4.150 27 C -0.166 4.166 28 C -0.011 4.011 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.170 0.830 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.087 0.913 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 25.806 -15.721 -3.247 30.391 hybrid contribution 0.571 1.816 0.756 2.048 sum 26.377 -13.904 -2.491 29.921 Atomic orbital electron populations 1.69619 1.05649 1.27510 1.49321 1.25036 0.95490 0.97976 0.97624 0.86669 0.79751 0.84038 0.78901 1.19601 1.20184 1.19536 1.19434 0.79252 0.96637 1.48129 0.86280 1.42210 1.07541 1.06178 1.67070 1.19706 0.88198 0.84557 0.83998 1.90563 1.69440 1.30935 1.53741 1.21699 0.95026 0.90423 1.01314 1.60027 1.05812 1.12636 1.51439 1.21870 0.88747 0.94580 1.00814 1.22332 0.93688 0.96908 0.98717 0.89491 1.22612 0.98724 0.96908 0.97091 1.22183 0.88293 0.99302 0.92796 1.48417 1.20966 1.22178 1.43410 1.19348 0.79903 0.84473 0.81799 1.90701 1.44467 1.70762 1.35396 1.21928 1.01818 0.91338 1.00796 0.85874 1.22661 0.96063 0.95056 0.99802 1.21176 0.85754 1.05190 1.08250 1.22602 0.94265 1.01085 0.97044 1.22770 0.96898 0.99955 0.96962 1.22218 0.94606 0.85145 0.99131 0.91603 0.79691 0.89461 0.93750 0.82964 0.90660 0.95069 0.88924 0.90243 0.91448 0.91138 0.88056 0.87442 0.88220 0.88482 0.88253 0.88519 0.91252 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.20 27.73 -169.99 -4.71 14.48 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 7 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.87 5.09 -10.96 -0.06 -13.92 16 10 C 0.45 9.97 7.82 -10.98 -0.09 9.88 16 11 O -0.56 -14.85 15.78 5.55 0.09 -14.76 16 12 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 13 N -0.67 -9.45 6.07 -115.06 -0.70 -10.15 16 14 C 0.07 0.73 5.14 -3.82 -0.02 0.71 16 15 C -0.10 -0.90 3.19 -88.47 -0.28 -1.18 16 16 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 17 C -0.12 -0.99 6.37 -24.90 -0.16 -1.15 16 18 C 0.10 0.74 6.28 -3.06 -0.02 0.72 16 19 N -0.62 -6.06 3.33 -170.52 -0.57 -6.63 16 20 C 0.56 6.32 7.63 -10.98 -0.08 6.24 16 21 O -0.54 -7.95 16.50 5.55 0.09 -7.86 16 22 C -0.14 -1.18 5.54 -91.78 -0.51 -1.68 16 23 H 0.12 0.82 7.74 -51.93 -0.40 0.42 16 24 C -0.10 -0.72 10.23 -26.74 -0.27 -0.99 16 25 C -0.20 -1.71 5.05 -154.52 -0.78 -2.49 16 26 C -0.11 -0.93 10.16 -26.73 -0.27 -1.20 16 27 C -0.13 -0.83 10.53 -26.73 -0.28 -1.11 16 28 C 0.11 1.08 6.37 -2.53 -0.02 1.06 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.37 7.62 5.77 -40.82 -0.24 7.38 16 31 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.35 5.23 8.43 -39.29 -0.33 4.89 16 34 H 0.07 0.74 7.97 -51.93 -0.41 0.33 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.69 7.91 -51.93 -0.41 0.27 16 38 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 47 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -34.39 390.70 -9.93 -44.32 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -7.67 Total: 11.63 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -3.06 Total: 1.82 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.55 Total: -55.52 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.18 Total: -22.62 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.39 -9.93 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491837249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.392 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds