Wall clock time and date at job start Fri Apr 10 2020 18:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99659 * 3 2 1 5 5 H 1.48496 * 109.47530 * 30.00096 * 3 2 1 6 6 H 1.48501 * 109.47312 * 150.00340 * 3 2 1 7 7 C 1.38945 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00273 * 0.02562 * 7 2 1 9 9 N 1.37104 * 120.00001 * 179.72366 * 7 2 1 10 10 C 1.34777 * 120.00173 * 180.27893 * 9 7 2 11 11 O 1.21293 * 119.99643 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00075 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.46942 * 179.97438 * 12 10 9 14 14 C 1.46903 * 110.99955 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.09000 * 110.88872 * 308.87929 * 15 14 13 17 17 C 1.55151 * 111.00417 * 72.80738 * 15 14 13 18 18 C 1.54327 * 102.94416 * 153.57597 * 17 15 14 19 19 N 1.47019 * 107.26721 * 337.80251 * 18 17 15 20 20 C 1.34775 * 125.64760 * 178.90364 * 19 18 17 21 21 O 1.21285 * 120.00278 * 180.02562 * 20 19 18 22 22 C 1.50703 * 120.00033 * 0.04968 * 20 19 18 23 23 H 1.09002 * 115.55064 * 34.27013 * 22 20 19 24 24 C 1.52999 * 117.49599 * 248.60537 * 22 20 19 25 25 C 1.52988 * 59.99806 * 252.50909 * 24 22 20 26 26 C 1.52997 * 138.58745 * 130.89327 * 25 24 22 27 27 C 1.52994 * 138.58920 * 229.10738 * 25 24 22 28 28 C 1.47421 * 108.70601 * 358.94323 * 19 18 17 29 29 H 0.97004 * 120.00486 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99687 * 0.27579 * 9 7 2 31 31 H 1.08994 * 109.46850 * 299.99690 * 12 10 9 32 32 H 1.08998 * 109.47115 * 59.99614 * 12 10 9 33 33 H 1.00895 * 111.00101 * 303.95589 * 13 12 10 34 34 H 1.08999 * 109.46830 * 300.00217 * 14 13 12 35 35 H 1.08991 * 109.46772 * 60.00099 * 14 13 12 36 36 H 1.09000 * 110.71956 * 271.93445 * 17 15 14 37 37 H 1.09002 * 110.72353 * 35.20870 * 17 15 14 38 38 H 1.09006 * 109.87902 * 218.38727 * 18 17 15 39 39 H 1.08996 * 110.01099 * 97.29310 * 18 17 15 40 40 H 1.09002 * 117.50083 * 359.97438 * 24 22 20 41 41 H 1.09002 * 117.50417 * 144.99430 * 24 22 20 42 42 H 1.09001 * 117.49690 * 238.37974 * 26 25 24 43 43 H 1.09003 * 117.50279 * 23.40578 * 26 25 24 44 44 H 1.09004 * 117.49660 * 336.59864 * 27 25 24 45 45 H 1.08995 * 117.50339 * 121.59362 * 27 25 24 46 46 H 1.08997 * 110.36891 * 265.29109 * 28 19 18 47 47 H 1.08999 * 110.46397 * 143.01240 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0088 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 -0.0052 10 6 4.0538 -2.3704 -0.0103 11 8 3.4473 -3.4208 -0.0104 12 6 5.5608 -2.3704 -0.0161 13 7 6.0504 -3.7553 -0.0204 14 6 7.5189 -3.7945 -0.0266 15 6 7.9902 -5.2501 -0.0316 16 1 7.5051 -5.8184 0.7620 17 6 7.7484 -5.9082 -1.4157 18 6 8.8270 -7.0107 -1.4675 19 7 9.8878 -6.6280 -0.5242 20 6 11.0006 -7.3417 -0.2618 21 8 11.8118 -6.9278 0.5392 22 6 11.2372 -8.6540 -0.9641 23 1 10.8761 -8.7094 -1.9911 24 6 11.1678 -9.9289 -0.1211 25 6 12.5190 -9.4165 -0.6233 26 6 13.9142 -9.1249 -0.0673 27 6 13.7569 -9.9583 -1.3408 28 6 9.5324 -5.3348 0.0877 29 1 -0.4851 0.8400 -0.0004 30 1 3.8648 -0.3632 -0.0056 31 1 5.9206 -1.8546 -0.9063 32 1 5.9274 -1.8585 0.8736 33 1 5.6779 -4.2730 0.7614 34 1 7.8920 -3.2891 -0.9174 35 1 7.8995 -3.2921 0.8625 36 1 6.7501 -6.3428 -1.4670 37 1 7.8971 -5.1852 -2.2178 38 1 9.2355 -7.0826 -2.4756 39 1 8.3966 -7.9678 -1.1729 40 1 10.9514 -9.8185 0.9415 41 1 10.7610 -10.8231 -0.5934 42 1 14.2965 -8.1097 -0.1743 43 1 14.2129 -9.6466 0.8420 44 1 13.9520 -11.0283 -1.2693 45 1 14.0356 -9.4917 -2.2856 46 1 10.0006 -4.5155 -0.4578 47 1 9.8335 -5.3133 1.1351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491837249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:44 Heat of formation + Delta-G solvation = -26.773047 kcal Electronic energy + Delta-G solvation = -25864.381052 eV Core-core repulsion = 22048.137065 eV Total energy + Delta-G solvation = -3816.243987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32629 -40.29708 -39.41238 -38.08492 -36.63690 -35.84196 -33.80679 -33.70457 -32.72009 -30.47034 -28.90387 -26.82421 -25.38024 -23.90578 -23.51005 -23.30135 -21.58551 -21.19110 -20.89092 -20.20823 -19.53020 -18.29416 -17.84690 -17.17515 -16.99918 -16.60819 -16.56643 -15.92126 -15.84241 -15.80532 -15.41294 -15.22401 -14.91508 -14.67264 -14.37385 -14.29318 -14.14512 -13.64978 -13.53384 -13.31978 -13.23808 -12.86920 -12.68890 -12.65008 -12.40498 -12.37940 -12.07198 -11.96306 -11.82958 -11.59079 -11.50024 -11.21965 -11.11819 -10.96742 -10.79418 -10.42008 -10.23654 -9.70135 -9.29647 -8.40505 -6.01384 1.31084 1.36472 1.39009 1.45226 1.82667 1.97491 2.23740 2.70324 2.72803 2.79059 3.16062 3.29125 3.31198 3.56622 3.65736 3.79904 3.83172 3.94660 4.06872 4.18313 4.31017 4.35677 4.40643 4.45231 4.50801 4.54353 4.59282 4.60259 4.72117 4.73869 4.74903 4.76978 4.79136 4.91836 4.96793 4.99954 5.03955 5.19393 5.25264 5.29751 5.39810 5.53455 5.91294 6.05297 6.38520 6.45847 6.60788 6.89250 7.08083 7.41200 7.97863 8.77098 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.044384 B = 0.001728 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.700721 B =16199.910444 C =16551.019273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.329 4.329 8 H 0.055 0.945 9 N -0.592 5.592 10 C 0.448 3.552 11 O -0.614 6.614 12 C 0.062 3.938 13 N -0.681 5.681 14 C 0.075 3.925 15 C -0.090 4.090 16 H 0.079 0.921 17 C -0.112 4.112 18 C 0.099 3.901 19 N -0.616 5.616 20 C 0.548 3.452 21 O -0.582 6.582 22 C -0.143 4.143 23 H 0.146 0.854 24 C -0.088 4.088 25 C -0.228 4.228 26 C -0.132 4.132 27 C -0.105 4.105 28 C 0.113 3.887 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.344 0.656 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.134 0.866 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.670 -14.484 -4.108 32.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.154 1.154 7 C -0.459 4.459 8 H 0.073 0.927 9 N -0.234 5.234 10 C 0.236 3.764 11 O -0.498 6.498 12 C -0.070 4.070 13 N -0.313 5.313 14 C -0.054 4.054 15 C -0.109 4.109 16 H 0.098 0.902 17 C -0.150 4.150 18 C -0.023 4.023 19 N -0.349 5.349 20 C 0.338 3.662 21 O -0.462 6.462 22 C -0.163 4.163 23 H 0.163 0.837 24 C -0.125 4.125 25 C -0.228 4.228 26 C -0.169 4.169 27 C -0.142 4.142 28 C -0.010 4.010 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.134 0.866 32 H 0.093 0.907 33 H 0.162 0.838 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.152 0.848 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.137 0.863 45 H 0.123 0.877 46 H 0.094 0.906 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 28.505 -14.973 -4.365 32.493 hybrid contribution -0.314 1.456 1.113 1.859 sum 28.191 -13.517 -3.252 31.433 Atomic orbital electron populations 1.69803 1.08154 1.29220 1.50354 1.26106 0.96450 1.02697 0.96080 0.85365 0.79475 0.76745 0.79932 1.18145 1.20157 1.15445 1.19018 0.81586 0.94917 1.50344 0.92652 1.42043 1.05779 1.07682 1.67862 1.21020 0.91075 0.83256 0.81001 1.90543 1.71427 1.32761 1.55060 1.21624 0.89370 0.92009 1.04016 1.60030 1.08110 1.11747 1.51443 1.21907 0.86229 0.95349 1.01948 1.22214 0.93204 0.96469 0.99025 0.90217 1.22577 0.98602 0.97218 0.96628 1.22292 0.87426 0.99328 0.93263 1.48524 1.20982 1.22009 1.43356 1.19908 0.79599 0.85309 0.81387 1.90674 1.46038 1.72002 1.37506 1.21986 1.02463 0.90177 1.01697 0.83685 1.22738 0.95232 0.95286 0.99205 1.21451 0.86183 1.05846 1.09338 1.22602 0.94960 1.00774 0.98585 1.22858 0.94470 1.00705 0.96135 1.22181 0.94738 0.85546 0.98547 0.91178 0.77482 0.86622 0.90736 0.83777 0.89364 0.93899 0.89736 0.89865 0.89534 0.90053 0.89285 0.84779 0.90040 0.88142 0.86342 0.87737 0.90592 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 13.96 21.66 0.30 -55.79 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.35 16 3 Si 0.96 38.33 27.73 68.60 1.90 40.24 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 6 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 7 C -0.33 -19.15 10.16 84.04 0.85 -18.29 16 8 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 9 N -0.59 -27.38 5.09 -306.98 -1.56 -28.94 16 10 C 0.45 19.63 7.82 87.66 0.69 20.32 16 11 O -0.61 -33.21 15.78 -3.07 -0.05 -33.26 16 12 C 0.06 1.77 6.17 85.56 0.53 2.29 16 13 N -0.68 -17.95 6.07 -517.95 -3.15 -21.10 16 14 C 0.07 1.35 5.14 86.30 0.44 1.79 16 15 C -0.09 -1.51 3.19 -9.40 -0.03 -1.54 16 16 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 17 C -0.11 -1.71 6.37 31.78 0.20 -1.51 16 18 C 0.10 1.28 6.28 86.73 0.54 1.83 16 19 N -0.62 -11.37 3.33 -811.80 -2.70 -14.07 16 20 C 0.55 12.17 7.63 87.66 0.67 12.84 16 21 O -0.58 -17.65 16.50 -3.05 -0.05 -17.70 16 22 C -0.14 -2.21 5.54 -11.54 -0.06 -2.28 16 23 H 0.15 1.54 7.74 -2.39 -0.02 1.52 16 24 C -0.09 -1.14 10.23 30.59 0.31 -0.82 16 25 C -0.23 -3.56 5.05 -52.19 -0.26 -3.82 16 26 C -0.13 -2.15 10.16 30.59 0.31 -1.84 16 27 C -0.11 -1.15 10.53 30.59 0.32 -0.83 16 28 C 0.11 2.05 6.37 86.86 0.55 2.60 16 29 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.39 14.83 5.77 -92.71 -0.53 14.29 16 31 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.34 9.93 8.43 -89.70 -0.76 9.17 16 34 H 0.09 1.41 7.97 -2.39 -0.02 1.39 16 35 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.22 7.91 -2.39 -0.02 1.21 16 38 H 0.09 0.84 8.06 -2.38 -0.02 0.82 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 1.28 8.04 -2.39 -0.02 1.27 16 47 H 0.06 1.34 8.04 -2.39 -0.02 1.33 16 Total: -1.00 -81.00 390.70 -0.13 -81.14 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: -0.37 Total: 39.10 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 5.54 Total: 10.39 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -7.11 Total: -119.90 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -0.10 Total: -50.96 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.24 kcal Total: -81.00 -0.13 -81.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491837249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.363 kcal (2) G-P(sol) polarization free energy of solvation -81.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds