Wall clock time and date at job start Fri Apr 10 2020 18:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47484 * 110.99773 * 74.03073 * 13 12 10 15 15 C 1.53516 * 87.93162 * 138.70049 * 14 13 12 16 16 C 1.52999 * 114.17147 * 220.32406 * 15 14 13 17 17 N 1.46493 * 109.47321 * 268.84237 * 16 15 14 18 18 C 1.34778 * 120.00049 * 179.97438 * 17 16 15 19 19 O 1.21283 * 119.99942 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.99924 * 180.02562 * 18 17 16 21 21 H 1.08998 * 115.55575 * 34.41867 * 20 18 17 22 22 C 1.53001 * 117.49684 * 248.74359 * 20 18 17 23 23 C 1.53005 * 117.49615 * 180.08924 * 20 18 17 24 24 H 1.09001 * 117.50208 * 359.97438 * 23 20 18 25 25 C 1.52999 * 117.49577 * 215.00051 * 23 20 18 26 26 C 1.53003 * 117.49691 * 128.62219 * 25 23 20 27 27 C 1.52995 * 59.99994 * 252.50908 * 26 25 23 28 28 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.09002 * 113.46980 * 253.46672 * 14 13 12 34 34 H 1.08997 * 113.47937 * 23.93233 * 14 13 12 35 35 H 1.09000 * 114.34380 * 87.63201 * 15 14 13 36 36 H 1.09011 * 109.46740 * 28.84227 * 16 15 14 37 37 H 1.08998 * 109.46933 * 148.83709 * 16 15 14 38 38 H 0.96999 * 120.00445 * 0.02562 * 17 16 15 39 39 H 1.09000 * 117.49876 * 0.02562 * 22 20 18 40 40 H 1.08998 * 117.49560 * 145.02208 * 22 20 18 41 41 H 1.09005 * 115.55306 * 274.32904 * 25 23 20 42 42 H 1.08993 * 117.50011 * 359.97438 * 26 25 23 43 43 H 1.09007 * 117.49635 * 145.01812 * 26 25 23 44 44 H 1.09000 * 117.49946 * 252.50961 * 27 26 25 45 45 H 1.09002 * 117.52117 * 107.48161 * 27 26 25 46 46 H 1.08999 * 113.47954 * 336.06479 * 28 13 12 47 47 H 1.09004 * 113.47420 * 106.52893 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.8300 -6.1355 1.3221 15 6 2.6793 -7.6538 1.1532 16 6 2.2571 -8.3872 2.4279 17 7 3.4498 -8.8152 3.1629 18 6 3.3207 -9.4844 4.3257 19 8 2.2171 -9.7327 4.7632 20 6 4.5477 -9.9242 5.0821 21 1 5.4031 -9.2513 5.0225 22 6 4.8334 -11.4256 5.1530 23 6 4.3348 -10.6817 6.3943 24 1 3.3074 -10.8615 6.7107 25 6 5.3390 -10.4366 7.5223 26 6 4.7799 -10.0713 8.8989 27 6 5.4752 -9.0064 8.0485 28 6 1.5115 -7.2624 0.2370 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 3.8675 -5.8025 1.3501 34 1 2.2336 -5.7281 2.1384 35 1 3.5108 -8.1331 0.6363 36 1 1.6656 -7.7180 3.0530 37 1 1.6601 -9.2601 2.1640 38 1 4.3324 -8.6163 2.8132 39 1 4.1342 -12.0952 4.6521 40 1 5.8769 -11.7404 5.1403 41 1 6.2400 -11.0493 7.4911 42 1 3.6967 -10.0052 9.0008 43 1 5.3130 -10.4440 9.7737 44 1 6.4657 -8.6783 8.3638 45 1 4.8498 -8.2400 7.5908 46 1 0.5632 -7.1558 0.7638 47 1 1.4315 -7.8845 -0.6545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494603954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:54 Heat of formation + Delta-G solvation = 11.929319 kcal Electronic energy + Delta-G solvation = -25869.292232 eV Core-core repulsion = 22054.726506 eV Total energy + Delta-G solvation = -3814.565726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57833 -39.98946 -38.23641 -37.72641 -35.34808 -34.84334 -33.90557 -31.40749 -30.87112 -27.81306 -25.81679 -25.41762 -24.49371 -23.64418 -22.73599 -22.37388 -20.82654 -20.18331 -19.49931 -19.19229 -17.91483 -17.49653 -16.55464 -16.19152 -15.96633 -15.58203 -15.30699 -15.25864 -14.86948 -14.56380 -14.42988 -14.03696 -13.65226 -13.55081 -13.28568 -12.88864 -12.71316 -12.48044 -12.14587 -11.98995 -11.77719 -11.75344 -11.50610 -11.42574 -11.28071 -11.25287 -11.09879 -10.71438 -10.48657 -10.42218 -10.35311 -10.23474 -10.14296 -9.89723 -9.52587 -9.26311 -8.74796 -8.27025 -7.97614 -6.42813 -3.83719 2.26132 2.84396 3.15366 3.25933 3.28924 3.33120 3.61718 3.87992 4.01764 4.14304 4.21994 4.32321 4.37544 4.44345 4.63158 4.68050 4.69850 4.85466 4.90097 4.92915 5.06674 5.10004 5.21580 5.28767 5.32160 5.35147 5.39448 5.51513 5.55311 5.56573 5.59221 5.71157 5.73313 5.75165 5.79644 5.79878 5.91660 6.02402 6.15595 6.24388 6.29896 6.56162 7.18605 7.29291 7.54238 8.02135 8.04669 8.60075 9.16819 9.52888 10.04452 10.75018 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.002039 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.043866 B =13730.785023 C =14955.319149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.579 6.579 12 C 0.009 3.991 13 N -0.444 5.444 14 C 0.019 3.981 15 C -0.134 4.134 16 C 0.131 3.869 17 N -0.722 5.722 18 C 0.541 3.459 19 O -0.544 6.544 20 C -0.187 4.187 21 H 0.126 0.874 22 C -0.144 4.144 23 C -0.089 4.089 24 H 0.119 0.881 25 C -0.130 4.130 26 C -0.174 4.174 27 C -0.177 4.177 28 C 0.004 3.996 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.404 0.596 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.070 0.930 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.875 -22.574 11.113 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.463 6.463 12 C -0.123 4.123 13 N -0.166 5.166 14 C -0.110 4.110 15 C -0.153 4.153 16 C 0.007 3.993 17 N -0.373 5.373 18 C 0.328 3.672 19 O -0.421 6.421 20 C -0.208 4.208 21 H 0.143 0.857 22 C -0.181 4.181 23 C -0.108 4.108 24 H 0.137 0.863 25 C -0.148 4.148 26 C -0.211 4.211 27 C -0.213 4.213 28 C -0.125 4.125 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.238 0.762 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.088 0.912 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.136 -22.414 10.784 25.876 hybrid contribution -0.456 1.170 0.386 1.314 sum 6.680 -21.244 11.170 24.914 Atomic orbital electron populations 1.69623 1.05935 1.28063 1.50684 1.25272 0.95655 0.99750 0.97362 0.85795 0.79691 0.81117 0.77717 1.19226 1.20722 1.20757 1.19743 0.93372 0.82192 1.47464 0.87886 1.41881 1.09192 1.04614 1.64469 1.19667 0.88359 0.84488 0.84555 1.90518 1.13636 1.87026 1.55150 1.22498 0.95114 0.92689 1.02045 1.68830 1.19344 1.00022 1.28357 1.23783 1.02753 0.92817 0.91682 1.23064 1.00270 0.96498 0.95490 1.21381 0.87325 0.98900 0.91699 1.45924 1.10338 1.57911 1.23134 1.19681 0.89703 0.77290 0.80562 1.90701 1.27395 1.56081 1.67939 1.22316 0.99065 0.97283 1.02115 0.85658 1.23059 1.02798 0.91443 1.00815 1.21826 1.00070 1.01666 0.87189 0.86297 1.21780 0.99894 0.99157 0.93937 1.22995 1.00903 1.03455 0.93776 1.22996 1.02322 0.92080 1.03947 1.23844 0.95996 0.93675 0.99019 0.91913 0.77491 0.92654 0.89039 0.89096 0.91512 0.87387 0.91217 0.91130 0.76171 0.88141 0.87663 0.87366 0.88544 0.88697 0.88682 0.88508 0.91180 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.56 -14.45 5.29 -10.96 -0.06 -14.51 16 10 C 0.44 10.59 7.62 -10.98 -0.08 10.51 16 11 O -0.58 -15.80 15.34 5.55 0.09 -15.72 16 12 C 0.01 0.15 5.31 -4.97 -0.03 0.13 16 13 N -0.44 -7.25 6.06 -246.07 -1.49 -8.74 16 14 C 0.02 0.27 6.28 -7.54 -0.05 0.23 16 15 C -0.13 -1.43 4.09 -90.09 -0.37 -1.80 16 16 C 0.13 1.34 5.58 -4.05 -0.02 1.32 16 17 N -0.72 -6.78 5.56 -60.30 -0.33 -7.11 16 18 C 0.54 5.95 7.61 -10.99 -0.08 5.87 16 19 O -0.54 -8.08 16.26 5.55 0.09 -7.99 16 20 C -0.19 -1.50 5.83 -91.77 -0.54 -2.04 16 21 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 22 C -0.14 -0.96 9.96 -26.69 -0.27 -1.22 16 23 C -0.09 -0.71 5.38 -90.58 -0.49 -1.20 16 24 H 0.12 1.17 7.67 -51.93 -0.40 0.77 16 25 C -0.13 -0.88 5.87 -90.62 -0.53 -1.41 16 26 C -0.17 -1.18 10.25 -26.73 -0.27 -1.45 16 27 C -0.18 -1.24 10.18 -26.73 -0.27 -1.51 16 28 C 0.00 0.05 7.29 -7.55 -0.06 0.00 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 31 H 0.06 0.89 7.56 -51.93 -0.39 0.50 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 34 H 0.07 1.00 7.43 -51.93 -0.39 0.62 16 35 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.82 7.81 -51.92 -0.41 0.41 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.40 2.90 8.47 -40.82 -0.35 2.55 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.53 8.14 -51.92 -0.42 0.10 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -33.85 394.74 -11.01 -44.86 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.66 Total: 11.72 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -3.29 Total: -0.63 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -1.16 Total: -54.31 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.18 Total: -23.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.85 -11.01 -44.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494603954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.789 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds