Wall clock time and date at job start Fri Apr 10 2020 18:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86800 * 119.99547 * 2 1 4 4 H 1.48496 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47457 * 299.99915 * 3 2 1 6 6 H 1.48501 * 109.47104 * 59.99987 * 3 2 1 7 7 C 1.38941 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.46921 * 179.97438 * 12 10 9 14 14 C 1.47484 * 110.99773 * 74.03073 * 13 12 10 15 15 C 1.53516 * 87.93162 * 138.70049 * 14 13 12 16 16 C 1.52999 * 114.17147 * 220.32406 * 15 14 13 17 17 N 1.46493 * 109.47321 * 268.84237 * 16 15 14 18 18 C 1.34778 * 120.00049 * 179.97438 * 17 16 15 19 19 O 1.21283 * 119.99942 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.99924 * 180.02562 * 18 17 16 21 21 H 1.08998 * 115.55575 * 34.41867 * 20 18 17 22 22 C 1.53001 * 117.49684 * 248.74359 * 20 18 17 23 23 C 1.53005 * 117.49615 * 180.08924 * 20 18 17 24 24 H 1.09001 * 117.50208 * 359.97438 * 23 20 18 25 25 C 1.52999 * 117.49577 * 215.00051 * 23 20 18 26 26 C 1.53003 * 117.49691 * 128.62219 * 25 23 20 27 27 C 1.52995 * 59.99994 * 252.50908 * 26 25 23 28 28 C 1.47482 * 110.99764 * 169.99672 * 13 12 10 29 29 H 0.97000 * 119.99884 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 32 32 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 33 33 H 1.09002 * 113.46980 * 253.46672 * 14 13 12 34 34 H 1.08997 * 113.47937 * 23.93233 * 14 13 12 35 35 H 1.09000 * 114.34380 * 87.63201 * 15 14 13 36 36 H 1.09011 * 109.46740 * 28.84227 * 16 15 14 37 37 H 1.08998 * 109.46933 * 148.83709 * 16 15 14 38 38 H 0.96999 * 120.00445 * 0.02562 * 17 16 15 39 39 H 1.09000 * 117.49876 * 0.02562 * 22 20 18 40 40 H 1.08998 * 117.49560 * 145.02208 * 22 20 18 41 41 H 1.09005 * 115.55306 * 274.32904 * 25 23 20 42 42 H 1.08993 * 117.50011 * 359.97438 * 26 25 23 43 43 H 1.09007 * 117.49635 * 145.01812 * 26 25 23 44 44 H 1.09000 * 117.49946 * 252.50961 * 27 26 25 45 45 H 1.09002 * 117.52117 * 107.48161 * 27 26 25 46 46 H 1.08999 * 113.47954 * 336.06479 * 28 13 12 47 47 H 1.09004 * 113.47420 * 106.52893 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2104 -3.5578 -0.0010 12 6 1.2439 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.8300 -6.1355 1.3221 15 6 2.6793 -7.6538 1.1532 16 6 2.2571 -8.3872 2.4279 17 7 3.4498 -8.8152 3.1629 18 6 3.3207 -9.4844 4.3257 19 8 2.2171 -9.7327 4.7632 20 6 4.5477 -9.9242 5.0821 21 1 5.4031 -9.2513 5.0225 22 6 4.8334 -11.4256 5.1530 23 6 4.3348 -10.6817 6.3943 24 1 3.3074 -10.8615 6.7107 25 6 5.3390 -10.4366 7.5223 26 6 4.7799 -10.0713 8.8989 27 6 5.4752 -9.0064 8.0485 28 6 1.5115 -7.2624 0.2370 29 1 -0.4850 0.8401 -0.0004 30 1 0.3535 -2.3906 0.0002 31 1 0.6170 -4.9209 0.8886 32 1 0.6176 -4.9205 -0.8913 33 1 3.8675 -5.8025 1.3501 34 1 2.2336 -5.7281 2.1384 35 1 3.5108 -8.1331 0.6363 36 1 1.6656 -7.7180 3.0530 37 1 1.6601 -9.2601 2.1640 38 1 4.3324 -8.6163 2.8132 39 1 4.1342 -12.0952 4.6521 40 1 5.8769 -11.7404 5.1403 41 1 6.2400 -11.0493 7.4911 42 1 3.6967 -10.0052 9.0008 43 1 5.3130 -10.4440 9.7737 44 1 6.4657 -8.6783 8.3638 45 1 4.8498 -8.2400 7.5908 46 1 0.5632 -7.1558 0.7638 47 1 1.4315 -7.8845 -0.6545 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494603954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:53 Heat of formation + Delta-G solvation = -13.141829 kcal Electronic energy + Delta-G solvation = -25870.379399 eV Core-core repulsion = 22054.726506 eV Total energy + Delta-G solvation = -3815.652893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62942 -40.94749 -39.63464 -38.82755 -36.12130 -35.89852 -35.67929 -33.35063 -32.20554 -29.03232 -27.00100 -26.86390 -25.59452 -24.36627 -23.54614 -23.20366 -21.62757 -21.05798 -20.86763 -20.36060 -19.91330 -18.32936 -17.85895 -17.42098 -16.72190 -16.68796 -16.52480 -16.36654 -16.31068 -15.75611 -15.67366 -15.35853 -15.01354 -14.76467 -14.33455 -14.01231 -13.70067 -13.54919 -13.45623 -13.35367 -13.08912 -12.88569 -12.53347 -12.45416 -12.38215 -12.31579 -12.13696 -11.92632 -11.85258 -11.79061 -11.58076 -11.48885 -11.06215 -10.87942 -10.55597 -10.36878 -10.13608 -10.04607 -9.79353 -8.49445 -5.98476 1.34516 1.39742 1.45153 1.54129 2.01320 2.07944 2.26824 2.67631 2.84497 3.04579 3.16536 3.23403 3.41678 3.60277 3.70878 3.74651 3.83986 4.04768 4.13797 4.15346 4.17599 4.26378 4.27781 4.35053 4.37844 4.46728 4.49468 4.52307 4.60435 4.68124 4.80103 4.80137 4.83815 4.86368 5.00243 5.03345 5.18516 5.21115 5.26688 5.33305 5.34766 5.38755 5.44941 5.88165 6.05920 6.52082 6.56862 7.09648 7.21001 7.52448 8.07968 8.68229 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015305 B = 0.002039 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.043866 B =13730.785023 C =14955.319149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.618 6.618 12 C 0.021 3.979 13 N -0.473 5.473 14 C 0.011 3.989 15 C -0.103 4.103 16 C 0.137 3.863 17 N -0.713 5.713 18 C 0.536 3.464 19 O -0.589 6.589 20 C -0.190 4.190 21 H 0.144 0.856 22 C -0.124 4.124 23 C -0.100 4.100 24 H 0.093 0.907 25 C -0.123 4.123 26 C -0.180 4.180 27 C -0.181 4.181 28 C 0.010 3.990 29 H 0.278 0.722 30 H 0.396 0.604 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.124 0.876 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.416 0.584 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.128 0.872 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.083 0.917 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 -23.756 11.028 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.227 3.773 11 O -0.504 6.504 12 C -0.111 4.111 13 N -0.195 5.195 14 C -0.118 4.118 15 C -0.122 4.122 16 C 0.012 3.988 17 N -0.364 5.364 18 C 0.324 3.676 19 O -0.470 6.470 20 C -0.211 4.211 21 H 0.162 0.838 22 C -0.161 4.161 23 C -0.119 4.119 24 H 0.112 0.888 25 C -0.141 4.141 26 C -0.217 4.217 27 C -0.218 4.218 28 C -0.119 4.119 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.094 0.906 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.142 0.858 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.253 0.747 39 H 0.114 0.886 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.103 0.897 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.892 -23.605 10.681 27.084 hybrid contribution -0.711 1.504 0.413 1.714 sum 7.181 -22.101 11.094 25.751 Atomic orbital electron populations 1.69681 1.06840 1.29271 1.50363 1.26072 0.96591 1.02496 0.96283 0.84855 0.78007 0.76999 0.78381 1.19775 1.19515 1.19546 1.19687 0.92657 0.83986 1.49880 0.90364 1.41963 1.09313 1.04768 1.65179 1.20743 0.88278 0.85944 0.82291 1.90483 1.15690 1.87928 1.56341 1.22388 0.94908 0.89938 1.03834 1.68826 1.20246 1.01145 1.29277 1.23788 1.01125 0.95932 0.90992 1.22874 1.00354 0.93577 0.95383 1.21256 0.87581 0.98732 0.91192 1.45878 1.10802 1.57081 1.22684 1.20207 0.90015 0.76683 0.80662 1.90679 1.29275 1.57962 1.69073 1.22337 0.98232 0.98729 1.01819 0.83842 1.23163 1.04103 0.90036 0.98813 1.21780 0.99393 1.02714 0.88018 0.88840 1.21829 1.00036 0.99014 0.93185 1.23058 1.00467 1.03589 0.94571 1.23006 1.02700 0.91930 1.04203 1.23938 0.96526 0.91207 1.00215 0.91273 0.77038 0.90643 0.87182 0.91473 0.92301 0.85758 0.92766 0.90380 0.74704 0.88647 0.84935 0.85407 0.89741 0.87190 0.87365 0.90116 0.89840 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.18 13.05 21.66 0.28 -49.90 16 2 C -0.01 -0.80 5.50 84.92 0.47 -0.33 16 3 Si 0.99 43.33 29.55 68.60 2.03 45.35 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.33 -19.15 9.68 84.04 0.81 -18.34 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -30.04 5.29 -306.98 -1.62 -31.66 16 10 C 0.44 21.36 7.62 87.66 0.67 22.03 16 11 O -0.62 -34.75 15.34 -3.07 -0.05 -34.80 16 12 C 0.02 0.73 5.31 85.56 0.45 1.19 16 13 N -0.47 -14.92 6.06 -932.44 -5.65 -20.57 16 14 C 0.01 0.31 6.28 83.57 0.53 0.84 16 15 C -0.10 -2.00 4.09 -10.45 -0.04 -2.04 16 16 C 0.14 2.62 5.58 86.38 0.48 3.10 16 17 N -0.71 -12.54 5.56 -463.06 -2.57 -15.11 16 18 C 0.54 11.54 7.61 87.66 0.67 12.21 16 19 O -0.59 -17.82 16.26 -3.04 -0.05 -17.87 16 20 C -0.19 -2.83 5.83 -11.54 -0.07 -2.90 16 21 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 22 C -0.12 -1.40 9.96 30.62 0.30 -1.10 16 23 C -0.10 -1.54 5.38 -10.77 -0.06 -1.60 16 24 H 0.09 1.93 7.67 -2.39 -0.02 1.92 16 25 C -0.12 -1.48 5.87 -10.79 -0.06 -1.55 16 26 C -0.18 -2.32 10.25 30.59 0.31 -2.00 16 27 C -0.18 -2.40 10.18 30.59 0.31 -2.09 16 28 C 0.01 0.21 7.29 83.57 0.61 0.82 16 29 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 31 H 0.08 2.33 7.56 -2.39 -0.02 2.31 16 32 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 33 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 34 H 0.06 1.79 7.43 -2.39 -0.02 1.77 16 35 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.05 1.24 7.81 -2.38 -0.02 1.22 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.42 5.24 8.47 -92.71 -0.79 4.46 16 39 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 44 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.08 1.57 7.73 -2.39 -0.02 1.55 16 47 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -75.37 394.74 -2.78 -78.16 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -0.53 Total: 38.17 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 5.39 Total: 8.24 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -9.57 Total: -117.25 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.10 Total: -52.66 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -75.37 -2.78 -78.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494603954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.013 kcal (2) G-P(sol) polarization free energy of solvation -75.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds