Wall clock time and date at job start Fri Apr 10 2020 18:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47086 * 300.00297 * 3 2 1 6 6 H 1.48500 * 109.46879 * 60.00354 * 3 2 1 7 7 C 1.38950 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00444 * 179.97438 * 7 2 1 9 9 N 1.37105 * 120.00048 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99873 * 179.72298 * 9 7 2 11 11 O 1.21295 * 120.00056 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00080 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46984 * 180.02562 * 12 10 9 14 14 C 1.48575 * 110.99936 * 288.95738 * 13 12 10 15 15 C 1.55281 * 107.00575 * 233.89157 * 14 13 12 16 16 C 1.53718 * 101.91618 * 337.42089 * 15 14 13 17 17 H 1.08996 * 111.94206 * 280.93390 * 16 15 14 18 18 C 1.52637 * 114.30775 * 152.55619 * 16 15 14 19 19 N 1.47720 * 105.90705 * 189.81081 * 18 16 15 20 20 C 1.34776 * 119.67762 * 232.37289 * 19 18 16 21 21 O 1.21275 * 120.00461 * 359.97438 * 20 19 18 22 22 C 1.50699 * 119.99533 * 179.97438 * 20 19 18 23 23 C 1.53000 * 117.49768 * 248.74449 * 22 20 19 24 24 C 1.53003 * 117.49868 * 180.08468 * 22 20 19 25 25 C 1.46594 * 120.63436 * 52.35214 * 19 18 16 26 26 C 1.53952 * 110.58567 * 312.20803 * 25 19 18 27 27 C 1.45908 * 110.99616 * 170.00336 * 13 12 10 28 28 H 1.09001 * 109.30460 * 34.96462 * 27 13 12 29 29 H 0.96999 * 119.99993 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00209 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.46762 * 300.00389 * 12 10 9 32 32 H 1.09001 * 109.46863 * 60.00488 * 12 10 9 33 33 H 1.08997 * 109.92222 * 353.22516 * 14 13 12 34 34 H 1.09000 * 109.92175 * 114.55418 * 14 13 12 35 35 H 1.09005 * 110.94262 * 219.26898 * 15 14 13 36 36 H 1.09004 * 110.97640 * 95.59297 * 15 14 13 37 37 H 1.09004 * 110.00516 * 70.89029 * 18 16 15 38 38 H 1.08997 * 110.56775 * 309.02613 * 18 16 15 39 39 H 1.09001 * 115.55355 * 34.42074 * 22 20 19 40 40 H 1.08998 * 117.49957 * 359.97438 * 23 22 20 41 41 H 1.09002 * 117.49682 * 145.02612 * 23 22 20 42 42 H 1.09004 * 117.50165 * 214.98107 * 24 22 20 43 43 H 1.08998 * 117.49922 * 359.97438 * 24 22 20 44 44 H 1.09000 * 109.24889 * 191.92655 * 25 19 18 45 45 H 1.08993 * 109.25545 * 72.49691 * 25 19 18 46 46 H 1.08998 * 109.88236 * 291.60718 * 26 25 19 47 47 H 1.08995 * 109.94411 * 170.55730 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3963 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0067 11 8 3.2102 -3.5578 -0.0118 12 6 1.2437 -4.8630 -0.0073 13 7 2.1984 -5.9795 -0.0139 14 6 2.8819 -6.0879 -1.3286 15 6 2.6816 -7.5452 -1.8258 16 6 2.4052 -8.2937 -0.5119 17 1 3.3220 -8.4980 0.0410 18 6 1.5485 -9.5470 -0.6710 19 7 1.2001 -9.9758 0.6990 20 6 1.4371 -11.2463 1.0811 21 8 1.9336 -12.0315 0.3015 22 6 1.0849 -11.6913 2.4772 23 6 2.2393 -12.0170 3.4271 24 6 1.3802 -13.1453 2.8508 25 6 0.5995 -9.0325 1.6469 26 6 1.3816 -7.7065 1.6600 27 6 1.5194 -7.2493 0.2218 28 1 0.5343 -7.2231 -0.2441 29 1 -0.4850 0.8400 0.0004 30 1 0.3534 -2.3907 -0.0005 31 1 0.6207 -4.9233 0.8852 32 1 0.6134 -4.9182 -0.8949 33 1 2.4370 -5.3892 -2.0371 34 1 3.9451 -5.8776 -1.2129 35 1 3.5855 -7.9210 -2.3054 36 1 1.8279 -7.6136 -2.5002 37 1 2.1196 -10.3277 -1.1736 38 1 0.6429 -9.3228 -1.2345 39 1 0.1942 -11.2324 2.9063 40 1 3.2534 -11.9098 3.0421 41 1 2.1078 -11.7727 4.4812 42 1 0.6840 -13.6429 3.5260 43 1 1.8288 -13.7802 2.0867 44 1 0.6145 -9.4684 2.6459 45 1 -0.4326 -8.8383 1.3556 46 1 2.3685 -7.8624 2.0955 47 1 0.8362 -6.9589 2.2360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667675249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:57 Heat of formation + Delta-G solvation = -29.247600 kcal Electronic energy + Delta-G solvation = -27494.514432 eV Core-core repulsion = 23678.163140 eV Total energy + Delta-G solvation = -3816.351292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.92016 -39.54235 -37.95514 -36.52517 -35.89746 -33.90773 -32.71469 -31.61323 -31.17089 -29.23016 -26.87796 -25.59855 -24.29395 -23.13932 -22.99015 -22.74969 -20.89791 -20.35480 -19.03346 -18.95789 -17.85879 -17.68478 -16.25828 -16.03838 -15.81069 -15.48795 -15.28206 -14.94763 -14.57957 -14.37128 -14.05605 -13.95036 -13.70007 -13.45775 -13.17286 -13.00236 -12.65606 -12.61303 -12.19843 -12.06410 -11.90311 -11.61383 -11.42695 -11.33475 -11.19448 -11.15224 -10.95124 -10.92450 -10.80084 -10.62695 -10.34639 -10.28636 -10.20500 -9.96826 -9.50104 -8.92599 -8.45271 -7.96139 -7.90478 -6.41171 -3.81719 2.23078 2.64775 3.16323 3.26751 3.34030 3.52122 3.86726 3.93516 4.12858 4.20984 4.40584 4.41728 4.52265 4.56292 4.69689 4.75837 4.88604 4.92483 5.10743 5.16538 5.20347 5.25752 5.26532 5.34045 5.37685 5.40812 5.52025 5.56157 5.59251 5.62922 5.70724 5.77111 5.78776 5.83662 5.90167 5.97617 6.10515 6.22862 6.28292 6.34141 6.46171 7.11328 7.19861 7.32183 7.55958 7.92922 8.07598 8.63129 9.19465 9.55843 10.08080 10.76832 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.028751 B = 0.002400 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.636890 B =11665.478124 C =12101.223897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.568 5.568 10 C 0.445 3.555 11 O -0.575 6.575 12 C 0.041 3.959 13 N -0.495 5.495 14 C 0.058 3.942 15 C -0.134 4.134 16 C -0.109 4.109 17 H 0.093 0.907 18 C 0.124 3.876 19 N -0.608 5.608 20 C 0.543 3.457 21 O -0.545 6.545 22 C -0.198 4.198 23 C -0.151 4.151 24 C -0.149 4.149 25 C 0.109 3.891 26 C -0.117 4.117 27 C 0.069 3.931 28 H 0.045 0.955 29 H 0.270 0.730 30 H 0.391 0.609 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 -21.834 3.857 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.205 5.205 10 C 0.230 3.770 11 O -0.459 6.459 12 C -0.090 4.090 13 N -0.218 5.218 14 C -0.069 4.069 15 C -0.173 4.173 16 C -0.129 4.129 17 H 0.112 0.888 18 C 0.002 3.998 19 N -0.341 5.341 20 C 0.332 3.668 21 O -0.423 6.423 22 C -0.218 4.218 23 C -0.188 4.188 24 C -0.187 4.187 25 C -0.014 4.014 26 C -0.155 4.155 27 C -0.040 4.040 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.224 0.776 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.143 0.857 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.489 -21.944 3.834 22.326 hybrid contribution -1.095 1.074 -0.559 1.632 sum -2.583 -20.869 3.276 21.282 Atomic orbital electron populations 1.69619 1.05917 1.27974 1.50988 1.25251 0.95634 0.99681 0.97490 0.85814 0.79721 0.81215 0.77680 1.19238 1.20806 1.20773 1.19737 0.93349 0.82206 1.47272 0.87920 1.41875 1.09132 1.04607 1.64873 1.19742 0.88435 0.84481 0.84325 1.90522 1.13642 1.86993 1.54701 1.22079 0.93929 0.91676 1.01350 1.62939 1.27040 1.00835 1.31027 1.23093 1.01201 0.94059 0.88561 1.22674 1.02151 0.96162 0.96319 1.22587 0.98977 0.93902 0.97402 0.88847 1.21710 0.98807 0.96726 0.82520 1.48193 1.62240 1.10043 1.13588 1.19719 0.77411 0.81525 0.88156 1.90675 1.44379 1.52850 1.54352 1.22248 1.02775 1.02108 0.94716 1.22954 0.95424 1.02242 0.98191 1.22970 1.02656 0.89976 1.03052 1.21834 0.96565 0.89814 0.93181 1.21680 1.01735 0.95365 0.96768 1.22087 0.96168 0.89689 0.96080 0.93715 0.91986 0.77585 0.89604 0.93365 0.92682 0.89673 0.90532 0.91372 0.88660 0.91077 0.85706 0.88197 0.87650 0.87934 0.87476 0.89235 0.91495 0.90385 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 2 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.57 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.45 10.42 7.52 -10.98 -0.08 10.34 16 11 O -0.58 -15.52 15.19 5.54 0.08 -15.43 16 12 C 0.04 0.72 5.03 -4.97 -0.03 0.70 16 13 N -0.49 -8.00 4.78 -225.31 -1.08 -9.08 16 14 C 0.06 0.90 5.73 -1.69 -0.01 0.89 16 15 C -0.13 -1.55 6.51 -25.15 -0.16 -1.71 16 16 C -0.11 -1.24 2.87 -89.18 -0.26 -1.50 16 17 H 0.09 1.19 8.08 -51.93 -0.42 0.77 16 18 C 0.12 1.30 5.96 -3.56 -0.02 1.28 16 19 N -0.61 -6.16 2.99 -172.26 -0.52 -6.67 16 20 C 0.54 6.12 7.45 -10.99 -0.08 6.04 16 21 O -0.54 -8.01 15.61 5.56 0.09 -7.93 16 22 C -0.20 -1.59 4.84 -91.77 -0.44 -2.03 16 23 C -0.15 -1.05 10.24 -26.69 -0.27 -1.33 16 24 C -0.15 -1.09 10.05 -26.69 -0.27 -1.36 16 25 C 0.11 0.89 6.14 -3.49 -0.02 0.87 16 26 C -0.12 -1.21 6.05 -26.98 -0.16 -1.37 16 27 C 0.07 0.85 1.74 -67.74 -0.12 0.73 16 28 H 0.04 0.53 7.60 -51.93 -0.39 0.14 16 29 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 30 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 31 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 32 H 0.05 0.78 7.91 -51.93 -0.41 0.37 16 33 H 0.05 0.91 7.40 -51.93 -0.38 0.53 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 37 H 0.10 1.10 7.00 -51.93 -0.36 0.73 16 38 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 39 H 0.13 0.74 6.88 -51.93 -0.36 0.39 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.11 0.95 7.67 -51.93 -0.40 0.55 16 44 H 0.09 0.57 5.68 -51.93 -0.30 0.27 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -33.10 373.99 -9.80 -42.91 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.49 Total: 9.06 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.17 Total: 3.63 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.93 Total: -53.89 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.17 Total: -23.36 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.10 -9.80 -42.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667675249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.661 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds