Wall clock time and date at job start Fri Apr 10 2020 18:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 120.00125 * 2 1 4 4 H 1.48502 * 109.47087 * 270.00367 * 3 2 1 5 5 H 1.48495 * 109.46991 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.47095 * 150.00240 * 3 2 1 7 7 C 1.38954 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99710 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99969 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99913 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00325 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47211 * 186.11929 * 12 10 9 14 14 C 1.48280 * 111.00095 * 176.40173 * 13 12 10 15 15 C 1.54545 * 106.74005 * 212.72864 * 14 13 12 16 16 C 1.53954 * 104.20714 * 0.56163 * 15 14 13 17 17 H 1.08992 * 109.14419 * 269.37093 * 16 15 14 18 18 C 1.50116 * 112.91299 * 147.71261 * 16 15 14 19 19 N 1.44003 * 115.95282 * 264.08005 * 18 16 15 20 20 C 1.34780 * 116.31274 * 182.35409 * 19 18 16 21 21 O 1.21281 * 119.99881 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00076 * 180.02562 * 20 19 18 23 23 C 1.52998 * 117.49894 * 248.62414 * 22 20 19 24 24 C 1.52997 * 117.49859 * 179.97438 * 22 20 19 25 25 C 1.44313 * 127.37298 * 2.33493 * 19 18 16 26 26 C 1.51627 * 113.15291 * 6.66584 * 25 19 18 27 27 C 1.49763 * 111.04100 * 60.14450 * 13 12 10 28 28 H 1.08998 * 113.55870 * 284.06624 * 27 13 12 29 29 H 0.97002 * 119.99635 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00411 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.46796 * 66.12022 * 12 10 9 32 32 H 1.09000 * 109.46899 * 306.12380 * 12 10 9 33 33 H 1.08997 * 110.01068 * 93.39111 * 14 13 12 34 34 H 1.09006 * 110.01164 * 332.06023 * 14 13 12 35 35 H 1.09004 * 110.48373 * 119.24537 * 15 14 13 36 36 H 1.09001 * 110.48270 * 241.88195 * 15 14 13 37 37 H 1.08994 * 108.18521 * 25.77171 * 18 16 15 38 38 H 1.08998 * 108.17951 * 142.60622 * 18 16 15 39 39 H 1.08998 * 115.54820 * 34.32460 * 22 20 19 40 40 H 1.09007 * 117.49549 * 359.97438 * 23 22 20 41 41 H 1.09001 * 117.50102 * 145.01818 * 23 22 20 42 42 H 1.08996 * 117.49831 * 214.97526 * 24 22 20 43 43 H 1.08996 * 117.49802 * 359.97438 * 24 22 20 44 44 H 1.08997 * 108.74625 * 127.61224 * 25 19 18 45 45 H 1.08994 * 108.74544 * 245.71485 * 25 19 18 46 46 H 1.09000 * 109.08819 * 81.93595 * 26 25 19 47 47 H 1.09003 * 109.07673 * 200.98588 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1915 -5.9755 0.1476 14 6 1.4785 -7.2724 0.2388 15 6 2.3194 -8.1783 1.1665 16 6 3.5111 -7.2949 1.5785 17 1 4.3243 -7.4372 0.8668 18 6 4.0086 -7.5931 2.9630 19 7 3.4966 -6.7496 4.0119 20 6 3.9758 -6.9790 5.2506 21 8 4.7930 -7.8567 5.4317 22 6 3.4962 -6.1450 6.4105 23 6 4.4988 -5.1831 7.0513 24 6 4.0775 -6.4548 7.7914 25 6 2.5290 -5.6862 3.8871 26 6 1.9199 -5.5940 2.5016 27 6 2.9548 -5.8650 1.4314 28 1 3.7384 -5.1077 1.4085 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 0.0002 31 1 0.7014 -4.9698 -0.9394 32 1 0.5377 -4.8745 0.8304 33 1 1.3974 -7.7238 -0.7500 34 1 0.4856 -7.1232 0.6631 35 1 1.7399 -8.4699 2.0425 36 1 2.6664 -9.0595 0.6269 37 1 3.7530 -8.6255 3.2014 38 1 5.0951 -7.5060 2.9601 39 1 2.4544 -5.8281 6.3627 40 1 5.5054 -5.1540 6.6341 41 1 4.1167 -4.2332 7.4251 42 1 3.4183 -6.3411 8.6520 43 1 4.8064 -7.2622 7.8610 44 1 1.7307 -5.8524 4.6103 45 1 3.0169 -4.7396 4.1190 46 1 1.1163 -6.3254 2.4161 47 1 1.5087 -4.5946 2.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667675251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:59 Heat of formation + Delta-G solvation = -20.211521 kcal Electronic energy + Delta-G solvation = -28353.438249 eV Core-core repulsion = 24537.478791 eV Total energy + Delta-G solvation = -3815.959458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19012 -39.71561 -37.91151 -36.48056 -35.71301 -34.00090 -32.99212 -31.35479 -31.06647 -29.52803 -26.88091 -25.68535 -24.36844 -23.56833 -23.09167 -22.60087 -20.70877 -19.72081 -19.19511 -18.29549 -17.85253 -17.70557 -16.34543 -16.25848 -15.85640 -15.45848 -15.23759 -14.81408 -14.68614 -14.49111 -14.24224 -14.09369 -13.72197 -13.25042 -13.02705 -12.84657 -12.52304 -12.38019 -12.29927 -11.79815 -11.76815 -11.71758 -11.52515 -11.48526 -11.15655 -10.95122 -10.90818 -10.75586 -10.64372 -10.60462 -10.42607 -10.27873 -10.25605 -9.85350 -9.51829 -8.61780 -8.43024 -8.05322 -7.96008 -6.45784 -3.86595 2.37355 2.89938 3.14782 3.24013 3.29258 3.68753 3.85904 3.95963 4.17795 4.31818 4.55834 4.58649 4.59880 4.70400 4.76713 4.84998 4.86771 4.96690 5.13645 5.15450 5.20981 5.32347 5.40118 5.41671 5.50163 5.58688 5.60516 5.66342 5.71690 5.76426 5.77000 5.82656 5.86726 5.89875 5.92825 5.99542 6.14834 6.21391 6.26788 6.56300 6.65804 7.03526 7.20400 7.24866 7.51431 8.02124 8.09611 8.57386 9.14219 9.49927 10.01611 10.71846 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.003774 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.061463 B = 7416.941879 C = 9125.355246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.030 3.970 13 N -0.489 5.489 14 C 0.031 3.969 15 C -0.121 4.121 16 C -0.098 4.098 17 H 0.094 0.906 18 C 0.136 3.864 19 N -0.590 5.590 20 C 0.534 3.466 21 O -0.544 6.544 22 C -0.197 4.197 23 C -0.150 4.150 24 C -0.150 4.150 25 C 0.121 3.879 26 C -0.161 4.161 27 C 0.083 3.917 28 H 0.125 0.875 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.125 0.875 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 -13.353 9.835 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.228 3.772 11 O -0.461 6.461 12 C -0.102 4.102 13 N -0.212 5.212 14 C -0.097 4.097 15 C -0.159 4.159 16 C -0.117 4.117 17 H 0.113 0.887 18 C 0.013 3.987 19 N -0.322 5.322 20 C 0.322 3.678 21 O -0.422 6.422 22 C -0.217 4.217 23 C -0.187 4.187 24 C -0.187 4.187 25 C -0.003 4.003 26 C -0.200 4.200 27 C -0.025 4.025 28 H 0.143 0.857 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.143 0.857 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.487 -13.616 9.344 16.581 hybrid contribution -1.185 1.007 0.453 1.620 sum 0.302 -12.609 9.797 15.971 Atomic orbital electron populations 1.69610 1.05935 1.28170 1.50568 1.25247 0.95605 0.99685 0.97293 0.85880 0.79238 0.80867 0.78453 1.20387 1.20942 1.19417 1.19685 0.93336 0.82179 1.47624 0.87927 1.41871 1.09151 1.04586 1.64420 1.19676 0.88386 0.84478 0.84615 1.90498 1.13640 1.86902 1.55092 1.22146 0.94491 0.91687 1.01858 1.65205 1.21985 1.00107 1.33931 1.23054 0.95866 0.90915 0.99849 1.22473 0.96331 0.98096 0.99029 1.21441 0.99085 0.95915 0.95275 0.88720 1.20065 0.98594 0.93564 0.86452 1.46597 1.42888 1.35038 1.07686 1.19763 0.81050 0.83557 0.83436 1.90666 1.33625 1.33279 1.84602 1.22287 1.00588 1.05011 0.93863 1.22942 0.98969 0.94559 1.02234 1.22948 1.03279 0.99769 0.92749 1.20759 0.91377 0.89952 0.98192 1.21964 0.99794 1.03723 0.94492 1.22625 0.96535 0.96713 0.86660 0.85742 0.91866 0.77543 0.89296 0.92984 0.90326 0.93915 0.91619 0.90806 0.91872 0.91606 0.85710 0.88218 0.87628 0.88017 0.87548 0.91575 0.91335 0.91433 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.86 13.05 55.50 0.72 -23.14 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.58 29.55 -169.99 -5.02 15.55 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.04 9.68 -14.93 -0.14 -8.19 16 8 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 9 N -0.56 -13.66 5.29 -10.97 -0.06 -13.72 16 10 C 0.44 9.92 6.82 -10.99 -0.07 9.85 16 11 O -0.58 -14.86 13.94 5.55 0.08 -14.78 16 12 C 0.03 0.51 4.81 -4.98 -0.02 0.48 16 13 N -0.49 -7.77 5.11 -223.86 -1.14 -8.91 16 14 C 0.03 0.38 5.90 -2.25 -0.01 0.37 16 15 C -0.12 -1.31 5.70 -25.42 -0.14 -1.45 16 16 C -0.10 -1.24 2.94 -90.96 -0.27 -1.51 16 17 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 18 C 0.14 1.74 5.02 -6.80 -0.03 1.70 16 19 N -0.59 -7.57 3.19 -179.93 -0.57 -8.14 16 20 C 0.53 7.20 7.31 -10.98 -0.08 7.12 16 21 O -0.54 -8.94 15.89 5.56 0.09 -8.86 16 22 C -0.20 -2.05 5.10 -91.77 -0.47 -2.52 16 23 C -0.15 -1.40 10.24 -26.71 -0.27 -1.67 16 24 C -0.15 -1.38 10.05 -26.71 -0.27 -1.65 16 25 C 0.12 1.44 5.16 -5.90 -0.03 1.41 16 26 C -0.16 -2.15 3.81 -28.28 -0.11 -2.26 16 27 C 0.08 1.27 2.72 -66.37 -0.18 1.08 16 28 H 0.12 2.40 6.48 -51.93 -0.34 2.06 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.39 9.12 7.90 -40.82 -0.32 8.80 16 31 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.05 0.79 5.98 -51.93 -0.31 0.48 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.48 7.00 -51.93 -0.36 0.12 16 35 H 0.07 0.67 7.79 -51.93 -0.40 0.27 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.79 7.76 -51.93 -0.40 0.38 16 38 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 39 H 0.13 1.09 6.60 -51.93 -0.34 0.74 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.11 1.12 7.67 -51.93 -0.40 0.72 16 44 H 0.07 0.65 6.76 -51.93 -0.35 0.30 16 45 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 46 H 0.07 0.82 5.79 -51.93 -0.30 0.52 16 47 H 0.09 1.36 6.11 -51.93 -0.32 1.04 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -31.28 362.45 -9.81 -41.09 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -7.15 Total: 12.16 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.21 Total: 3.28 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -1.05 Total: -53.91 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.17 Total: -23.64 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.28 -9.81 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667675251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.881 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds