Wall clock time and date at job start Fri Apr 10 2020 18:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 120.00125 * 2 1 4 4 H 1.48502 * 109.47087 * 270.00367 * 3 2 1 5 5 H 1.48495 * 109.46991 * 30.00010 * 3 2 1 6 6 H 1.48504 * 109.47095 * 150.00240 * 3 2 1 7 7 C 1.38954 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.37094 * 119.99710 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99969 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99913 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00325 * 179.97438 * 10 9 7 13 13 N 1.46894 * 109.47211 * 186.11929 * 12 10 9 14 14 C 1.48280 * 111.00095 * 176.40173 * 13 12 10 15 15 C 1.54545 * 106.74005 * 212.72864 * 14 13 12 16 16 C 1.53954 * 104.20714 * 0.56163 * 15 14 13 17 17 H 1.08992 * 109.14419 * 269.37093 * 16 15 14 18 18 C 1.50116 * 112.91299 * 147.71261 * 16 15 14 19 19 N 1.44003 * 115.95282 * 264.08005 * 18 16 15 20 20 C 1.34780 * 116.31274 * 182.35409 * 19 18 16 21 21 O 1.21281 * 119.99881 * 0.02562 * 20 19 18 22 22 C 1.50703 * 120.00076 * 180.02562 * 20 19 18 23 23 C 1.52998 * 117.49894 * 248.62414 * 22 20 19 24 24 C 1.52997 * 117.49859 * 179.97438 * 22 20 19 25 25 C 1.44313 * 127.37298 * 2.33493 * 19 18 16 26 26 C 1.51627 * 113.15291 * 6.66584 * 25 19 18 27 27 C 1.49763 * 111.04100 * 60.14450 * 13 12 10 28 28 H 1.08998 * 113.55870 * 284.06624 * 27 13 12 29 29 H 0.97002 * 119.99635 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00411 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.46796 * 66.12022 * 12 10 9 32 32 H 1.09000 * 109.46899 * 306.12380 * 12 10 9 33 33 H 1.08997 * 110.01068 * 93.39111 * 14 13 12 34 34 H 1.09006 * 110.01164 * 332.06023 * 14 13 12 35 35 H 1.09004 * 110.48373 * 119.24537 * 15 14 13 36 36 H 1.09001 * 110.48270 * 241.88195 * 15 14 13 37 37 H 1.08994 * 108.18521 * 25.77171 * 18 16 15 38 38 H 1.08998 * 108.17951 * 142.60622 * 18 16 15 39 39 H 1.08998 * 115.54820 * 34.32460 * 22 20 19 40 40 H 1.09007 * 117.49549 * 359.97438 * 23 22 20 41 41 H 1.09001 * 117.50102 * 145.01818 * 23 22 20 42 42 H 1.08996 * 117.49831 * 214.97526 * 24 22 20 43 43 H 1.08996 * 117.49802 * 359.97438 * 24 22 20 44 44 H 1.08997 * 108.74625 * 127.61224 * 25 19 18 45 45 H 1.08994 * 108.74544 * 245.71485 * 25 19 18 46 46 H 1.09000 * 109.08819 * 81.93595 * 26 25 19 47 47 H 1.09003 * 109.07673 * 200.98588 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5458 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1915 -5.9755 0.1476 14 6 1.4785 -7.2724 0.2388 15 6 2.3194 -8.1783 1.1665 16 6 3.5111 -7.2949 1.5785 17 1 4.3243 -7.4372 0.8668 18 6 4.0086 -7.5931 2.9630 19 7 3.4966 -6.7496 4.0119 20 6 3.9758 -6.9790 5.2506 21 8 4.7930 -7.8567 5.4317 22 6 3.4962 -6.1450 6.4105 23 6 4.4988 -5.1831 7.0513 24 6 4.0775 -6.4548 7.7914 25 6 2.5290 -5.6862 3.8871 26 6 1.9199 -5.5940 2.5016 27 6 2.9548 -5.8650 1.4314 28 1 3.7384 -5.1077 1.4085 29 1 -0.4850 0.8401 0.0004 30 1 0.3534 -2.3906 0.0002 31 1 0.7014 -4.9698 -0.9394 32 1 0.5377 -4.8745 0.8304 33 1 1.3974 -7.7238 -0.7500 34 1 0.4856 -7.1232 0.6631 35 1 1.7399 -8.4699 2.0425 36 1 2.6664 -9.0595 0.6269 37 1 3.7530 -8.6255 3.2014 38 1 5.0951 -7.5060 2.9601 39 1 2.4544 -5.8281 6.3627 40 1 5.5054 -5.1540 6.6341 41 1 4.1167 -4.2332 7.4251 42 1 3.4183 -6.3411 8.6520 43 1 4.8064 -7.2622 7.8610 44 1 1.7307 -5.8524 4.6103 45 1 3.0169 -4.7396 4.1190 46 1 1.1163 -6.3254 2.4161 47 1 1.5087 -4.5946 2.3590 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667675251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:59 Heat of formation + Delta-G solvation = -42.269276 kcal Electronic energy + Delta-G solvation = -28354.394745 eV Core-core repulsion = 24537.478791 eV Total energy + Delta-G solvation = -3816.915954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.28097 -40.88668 -39.58315 -37.39946 -36.80063 -35.91878 -34.16156 -33.23029 -32.27965 -30.61406 -28.31704 -26.87507 -25.95553 -24.64985 -24.11588 -23.32719 -21.86447 -20.95128 -20.63215 -19.87700 -19.32532 -18.69647 -17.54111 -17.36110 -17.32309 -16.67739 -16.52611 -16.17458 -16.11058 -15.68488 -15.44673 -15.32909 -15.04406 -14.58627 -14.36244 -14.09749 -13.79625 -13.56187 -13.38982 -13.31939 -13.07361 -12.87010 -12.71181 -12.67493 -12.44161 -12.40007 -12.16758 -12.09314 -11.89808 -11.70406 -11.51976 -11.47380 -11.43737 -11.31675 -10.90939 -10.22450 -9.98150 -9.66898 -9.23877 -8.45213 -5.93050 1.36886 1.37899 1.42371 1.54057 1.90748 2.07482 2.29188 2.80236 2.89868 3.21741 3.24898 3.41085 3.51448 3.65231 3.79542 3.82997 3.87724 3.95818 3.99666 4.13403 4.16686 4.27572 4.31029 4.36690 4.47858 4.52997 4.60196 4.67406 4.69551 4.71877 4.73537 4.79750 4.87996 4.90428 4.96409 5.00902 5.17456 5.20875 5.24502 5.35558 5.42962 5.61799 5.85006 5.94043 6.12799 6.21469 6.62883 7.05864 7.15440 7.58771 8.15050 8.72126 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.003774 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.061463 B = 7416.941879 C = 9125.355246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.988 3.012 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.329 4.329 8 H 0.077 0.923 9 N -0.573 5.573 10 C 0.444 3.556 11 O -0.615 6.615 12 C 0.043 3.957 13 N -0.513 5.513 14 C 0.032 3.968 15 C -0.110 4.110 16 C -0.089 4.089 17 H 0.084 0.916 18 C 0.140 3.860 19 N -0.590 5.590 20 C 0.527 3.473 21 O -0.581 6.581 22 C -0.205 4.205 23 C -0.149 4.149 24 C -0.142 4.142 25 C 0.122 3.878 26 C -0.152 4.152 27 C 0.079 3.921 28 H 0.074 0.926 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.149 0.851 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.885 -14.078 10.779 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.209 4.209 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.459 4.459 8 H 0.095 0.905 9 N -0.210 5.210 10 C 0.231 3.769 11 O -0.501 6.501 12 C -0.089 4.089 13 N -0.237 5.237 14 C -0.095 4.095 15 C -0.148 4.148 16 C -0.109 4.109 17 H 0.103 0.897 18 C 0.017 3.983 19 N -0.321 5.321 20 C 0.317 3.683 21 O -0.461 6.461 22 C -0.226 4.226 23 C -0.186 4.186 24 C -0.179 4.179 25 C -0.001 4.001 26 C -0.191 4.191 27 C -0.029 4.029 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.229 0.771 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.166 0.834 40 H 0.101 0.899 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.498 -14.347 10.278 17.655 hybrid contribution -0.500 1.196 0.119 1.302 sum -0.998 -13.151 10.397 16.794 Atomic orbital electron populations 1.69663 1.06707 1.29179 1.50487 1.25941 0.96458 1.02125 0.96423 0.85005 0.77964 0.77317 0.78535 1.19937 1.19504 1.19876 1.19597 0.92548 0.83999 1.49732 0.90539 1.41911 1.09228 1.04611 1.65298 1.20665 0.88211 0.85810 0.82192 1.90486 1.15750 1.87776 1.56089 1.22015 0.94224 0.88959 1.03661 1.65154 1.22656 1.01271 1.34601 1.23151 0.96407 0.88885 1.01071 1.22457 0.95003 0.97883 0.99474 1.21336 0.99744 0.94799 0.95005 0.89716 1.20004 0.97637 0.94083 0.86610 1.46668 1.42880 1.34951 1.07616 1.20339 0.80426 0.83347 0.84192 1.90644 1.35289 1.35035 1.85181 1.22379 1.01831 1.05234 0.93156 1.23019 0.98029 0.95648 1.01931 1.23017 1.03021 0.98867 0.92989 1.20809 0.91856 0.89300 0.98139 1.21834 0.99670 1.03033 0.94529 1.22380 0.96059 0.96896 0.87551 0.90756 0.91361 0.77072 0.87670 0.90557 0.89227 0.92157 0.90155 0.88925 0.90979 0.93438 0.83388 0.89882 0.85437 0.85207 0.89302 0.88401 0.92400 0.89190 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.36 13.05 21.66 0.28 -48.08 16 2 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 3 Si 0.99 42.23 29.55 68.60 2.03 44.26 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.33 -18.23 9.68 84.04 0.81 -17.41 16 8 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 9 N -0.57 -28.36 5.29 -306.99 -1.62 -29.98 16 10 C 0.44 20.30 6.82 87.66 0.60 20.90 16 11 O -0.62 -33.10 13.94 -3.06 -0.04 -33.14 16 12 C 0.04 1.41 4.81 85.56 0.41 1.82 16 13 N -0.51 -15.78 5.11 -862.15 -4.40 -20.18 16 14 C 0.03 0.68 5.90 86.56 0.51 1.19 16 15 C -0.11 -2.06 5.70 31.44 0.18 -1.88 16 16 C -0.09 -2.21 2.94 -11.02 -0.03 -2.24 16 17 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 18 C 0.14 3.53 5.02 85.91 0.43 3.97 16 19 N -0.59 -14.74 3.19 -841.58 -2.69 -17.43 16 20 C 0.53 13.97 7.31 87.66 0.64 14.61 16 21 O -0.58 -19.33 15.89 -3.03 -0.05 -19.38 16 22 C -0.21 -3.94 5.10 -11.54 -0.06 -4.00 16 23 C -0.15 -2.61 10.24 30.61 0.31 -2.29 16 24 C -0.14 -2.37 10.05 30.61 0.31 -2.07 16 25 C 0.12 2.76 5.16 86.34 0.45 3.20 16 26 C -0.15 -3.88 3.81 29.59 0.11 -3.77 16 27 C 0.08 2.44 2.72 44.19 0.12 2.57 16 28 H 0.07 3.06 6.48 -2.39 -0.02 3.04 16 29 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 30 H 0.40 18.58 7.90 -92.71 -0.73 17.85 16 31 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.08 2.15 5.98 -2.39 -0.01 2.14 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.10 7.00 -2.38 -0.02 1.08 16 35 H 0.08 1.32 7.79 -2.38 -0.02 1.30 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.71 7.76 -2.39 -0.02 1.69 16 38 H 0.05 1.35 7.98 -2.39 -0.02 1.34 16 39 H 0.15 2.11 6.60 -2.39 -0.02 2.10 16 40 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.09 1.83 7.67 -2.39 -0.02 1.81 16 44 H 0.10 1.62 6.76 -2.39 -0.02 1.61 16 45 H 0.06 1.43 8.07 -2.39 -0.02 1.41 16 46 H 0.09 1.89 5.79 -2.39 -0.01 1.88 16 47 H 0.07 2.04 6.11 -2.39 -0.01 2.02 16 Total: -1.00 -70.50 362.45 -0.98 -71.47 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: 0.26 Total: 37.90 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 5.26 Total: 14.56 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -8.43 Total: -115.67 kcal Atomic # 8 Polarization: -52.43 SS G_CDS: -0.09 Total: -52.52 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -70.50 -0.98 -71.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667675251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.202 kcal (2) G-P(sol) polarization free energy of solvation -70.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds