Wall clock time and date at job start Fri Apr 10 2020 18:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00175 * 2 1 4 4 H 1.48505 * 109.47251 * 270.00201 * 3 2 1 5 5 H 1.48501 * 109.46947 * 29.99784 * 3 2 1 6 6 H 1.48497 * 109.47509 * 150.00215 * 3 2 1 7 7 C 1.38948 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99971 * 0.02562 * 7 2 1 9 9 N 1.37102 * 120.00622 * 179.97438 * 7 2 1 10 10 C 1.34767 * 120.00179 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00540 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99831 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46852 * 180.02562 * 12 10 9 14 14 C 1.48562 * 111.00206 * 51.04123 * 13 12 10 15 15 C 1.55291 * 107.00855 * 126.11376 * 14 13 12 16 16 C 1.53423 * 101.51330 * 23.03217 * 15 14 13 17 17 H 1.08999 * 111.66154 * 78.22702 * 16 15 14 18 18 C 1.52236 * 114.25795 * 206.33705 * 16 15 14 19 19 N 1.47719 * 106.35969 * 169.62255 * 18 16 15 20 20 C 1.34770 * 119.68352 * 127.96403 * 19 18 16 21 21 O 1.21279 * 120.00243 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00059 * 180.02562 * 20 19 18 23 23 C 1.53003 * 117.49874 * 248.61806 * 22 20 19 24 24 C 1.52995 * 60.00090 * 252.50885 * 23 22 20 25 25 C 1.46598 * 120.63068 * 307.95630 * 19 18 16 26 26 C 1.53953 * 110.58138 * 47.82354 * 25 19 18 27 27 C 1.45909 * 110.99608 * 169.99860 * 13 12 10 28 28 H 1.09001 * 109.30672 * 324.41812 * 27 13 12 29 29 H 0.96994 * 119.99907 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99119 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47424 * 60.00024 * 12 10 9 32 32 H 1.08999 * 109.47118 * 300.00201 * 12 10 9 33 33 H 1.09003 * 109.92776 * 245.44955 * 14 13 12 34 34 H 1.08998 * 109.92975 * 6.56925 * 14 13 12 35 35 H 1.09002 * 110.94134 * 140.73088 * 15 14 13 36 36 H 1.08995 * 110.94015 * 264.38844 * 15 14 13 37 37 H 1.08995 * 110.06859 * 288.83581 * 18 16 15 38 38 H 1.09003 * 110.06529 * 50.30461 * 18 16 15 39 39 H 1.08998 * 115.55236 * 34.32136 * 22 20 19 40 40 H 1.09001 * 117.49998 * 359.97438 * 23 22 20 41 41 H 1.09004 * 117.50356 * 145.01503 * 23 22 20 42 42 H 1.09009 * 117.49647 * 252.51495 * 24 23 22 43 43 H 1.08998 * 117.50043 * 107.48864 * 24 23 22 44 44 H 1.09009 * 109.25178 * 287.54329 * 25 19 18 45 45 H 1.08998 * 109.25508 * 168.10916 * 25 19 18 46 46 H 1.09003 * 109.88287 * 189.48133 * 26 25 19 47 47 H 1.08993 * 109.88041 * 68.39556 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4474 -3.4209 0.0000 12 6 5.5608 -2.3705 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 5.4057 -4.5477 -1.0794 15 6 6.5464 -5.1834 -1.9198 16 6 7.7047 -5.1831 -0.9138 17 1 7.6137 -5.9976 -0.1952 18 6 9.0866 -5.1432 -1.5511 19 7 10.0437 -4.8933 -0.4540 20 6 11.1074 -5.7060 -0.2981 21 8 11.2750 -6.6376 -1.0564 22 6 12.0879 -5.4579 0.8190 23 6 13.4928 -4.9892 0.4348 24 6 13.2747 -6.4157 0.9431 25 6 9.8476 -3.7695 0.4667 26 6 8.3951 -3.7341 0.9759 27 6 7.4895 -3.8012 -0.2372 28 1 7.7649 -3.0120 -0.9368 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3632 -0.0004 31 1 5.9242 -1.8567 0.8900 32 1 5.9241 -1.8566 -0.8899 33 1 4.7840 -5.3305 -0.6447 34 1 4.7974 -3.8957 -1.7063 35 1 6.2919 -6.2014 -2.2151 36 1 6.7742 -4.5720 -2.7929 37 1 9.3060 -6.0982 -2.0286 38 1 9.1372 -4.3384 -2.2845 39 1 11.6604 -5.0642 1.7411 40 1 13.7080 -4.8607 -0.6260 41 1 13.9897 -4.2868 1.1041 42 1 13.6279 -6.6518 1.9470 43 1 13.3461 -7.2252 0.2168 44 1 10.0694 -2.8368 -0.0521 45 1 10.5233 -3.8777 1.3151 46 1 8.2159 -2.8075 1.5213 47 1 8.2091 -4.5895 1.6252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667675253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:04 Heat of formation + Delta-G solvation = -19.538103 kcal Electronic energy + Delta-G solvation = -27566.389201 eV Core-core repulsion = 23750.458945 eV Total energy + Delta-G solvation = -3815.930256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97638 -39.67060 -38.20352 -36.56416 -35.92430 -34.02566 -32.80632 -31.72018 -31.57925 -29.27352 -27.03285 -25.63921 -24.18935 -23.13687 -23.03266 -22.77975 -20.88732 -20.36394 -19.33318 -19.05478 -18.18476 -17.75171 -16.33230 -16.16873 -15.80406 -15.48516 -15.27404 -14.90854 -14.81746 -14.49341 -14.35253 -13.92489 -13.63057 -13.33647 -13.15682 -13.05219 -12.74410 -12.66991 -12.37942 -12.18043 -12.10152 -11.95091 -11.53133 -11.46192 -11.26947 -11.17904 -10.98385 -10.92771 -10.83208 -10.66386 -10.61581 -10.29814 -10.00537 -9.99233 -9.57482 -8.95810 -8.50290 -8.20551 -8.06346 -6.34050 -3.85602 2.20095 2.61787 2.99707 3.03713 3.12435 3.46491 3.69239 3.85565 4.07110 4.10443 4.30964 4.35579 4.48952 4.49837 4.65958 4.68275 4.76517 4.88731 5.00126 5.09728 5.15555 5.18822 5.20374 5.33369 5.37292 5.37773 5.46046 5.54260 5.55658 5.58456 5.61778 5.71923 5.74006 5.80291 5.88620 5.89569 5.95046 6.14494 6.27662 6.30383 6.57514 7.07976 7.14608 7.24699 7.55631 7.89991 8.10901 8.56384 8.91720 9.38981 9.78725 10.78987 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.027439 B = 0.002528 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.216984 B =11074.384293 C =11705.477319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.561 6.561 12 C 0.037 3.963 13 N -0.499 5.499 14 C 0.064 3.936 15 C -0.139 4.139 16 C -0.109 4.109 17 H 0.093 0.907 18 C 0.124 3.876 19 N -0.607 5.607 20 C 0.543 3.457 21 O -0.544 6.544 22 C -0.198 4.198 23 C -0.152 4.152 24 C -0.148 4.148 25 C 0.109 3.891 26 C -0.118 4.118 27 C 0.068 3.932 28 H 0.045 0.955 29 H 0.274 0.726 30 H 0.370 0.630 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.301 -5.011 0.646 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.235 3.765 11 O -0.443 6.443 12 C -0.094 4.094 13 N -0.223 5.223 14 C -0.062 4.062 15 C -0.178 4.178 16 C -0.128 4.128 17 H 0.111 0.889 18 C 0.002 3.998 19 N -0.340 5.340 20 C 0.331 3.669 21 O -0.422 6.422 22 C -0.219 4.219 23 C -0.189 4.189 24 C -0.186 4.186 25 C -0.014 4.014 26 C -0.156 4.156 27 C -0.041 4.041 28 H 0.063 0.937 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 25.603 -6.278 0.733 26.371 hybrid contribution 0.523 2.100 -0.594 2.244 sum 26.126 -4.178 0.139 26.458 Atomic orbital electron populations 1.69618 1.05640 1.27522 1.49250 1.25043 0.95498 0.97989 0.97640 0.86675 0.79814 0.84072 0.78852 1.19673 1.20137 1.19472 1.19425 0.79184 0.96627 1.48100 0.86260 1.42210 1.07566 1.06129 1.66986 1.19629 0.88146 0.84599 0.84107 1.90573 1.69404 1.30668 1.53668 1.22133 0.95318 0.90551 1.01433 1.63106 1.02366 1.10367 1.46472 1.23099 0.94607 0.97825 0.90716 1.22712 0.95543 1.01964 0.97590 1.22454 0.93560 0.98298 0.98516 0.88874 1.21622 0.86766 1.02966 0.88456 1.48184 1.25063 1.29675 1.31077 1.19699 0.81191 0.81348 0.84617 1.90681 1.74900 1.30501 1.46081 1.22274 0.90457 1.09057 1.00076 1.22931 0.94941 0.98355 1.02716 1.22961 0.98385 0.93831 1.03397 1.21843 0.97551 0.88833 0.93184 1.21689 0.92412 1.03716 0.97808 1.22132 0.89155 0.96700 0.96114 0.93671 0.91588 0.79721 0.89276 0.93424 0.89507 0.91870 0.90558 0.91438 0.88609 0.91182 0.85544 0.88315 0.87723 0.87869 0.87437 0.91447 0.89266 0.90147 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 13.96 55.50 0.77 -24.74 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.10 27.74 -169.99 -4.71 14.38 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 7 C -0.30 -8.50 10.16 -14.93 -0.15 -8.65 16 8 H 0.12 3.81 7.39 -52.48 -0.39 3.43 16 9 N -0.59 -13.80 5.09 -10.96 -0.06 -13.86 16 10 C 0.45 9.97 7.08 -10.99 -0.08 9.89 16 11 O -0.56 -14.54 13.54 5.55 0.08 -14.46 16 12 C 0.04 0.61 5.52 -4.97 -0.03 0.58 16 13 N -0.50 -7.75 5.13 -225.32 -1.16 -8.90 16 14 C 0.06 1.04 5.04 -1.69 -0.01 1.03 16 15 C -0.14 -1.67 6.50 -25.30 -0.16 -1.84 16 16 C -0.11 -1.23 2.83 -89.54 -0.25 -1.48 16 17 H 0.09 1.17 8.12 -51.93 -0.42 0.74 16 18 C 0.12 1.28 5.94 -3.76 -0.02 1.26 16 19 N -0.61 -5.94 3.00 -172.49 -0.52 -6.46 16 20 C 0.54 5.95 7.45 -10.99 -0.08 5.87 16 21 O -0.54 -7.90 15.61 5.56 0.09 -7.81 16 22 C -0.20 -1.51 5.14 -91.77 -0.47 -1.98 16 23 C -0.15 -0.94 10.23 -26.73 -0.27 -1.21 16 24 C -0.15 -1.04 10.04 -26.73 -0.27 -1.31 16 25 C 0.11 0.82 6.24 -3.49 -0.02 0.80 16 26 C -0.12 -1.10 6.06 -26.98 -0.16 -1.26 16 27 C 0.07 0.80 1.76 -67.74 -0.12 0.68 16 28 H 0.05 0.52 7.42 -51.93 -0.39 0.13 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 30 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.05 0.69 7.78 -51.93 -0.40 0.29 16 33 H 0.09 1.57 7.86 -51.93 -0.41 1.16 16 34 H 0.06 1.15 6.46 -51.93 -0.34 0.82 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.10 1.10 7.00 -51.93 -0.36 0.74 16 38 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 39 H 0.13 0.73 6.42 -51.93 -0.33 0.39 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 43 H 0.11 0.93 7.67 -51.93 -0.40 0.53 16 44 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.09 0.50 5.39 -51.93 -0.28 0.22 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -33.62 367.21 -9.52 -43.14 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.34 Total: 9.78 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.20 Total: 3.40 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.95 Total: -53.96 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: 0.16 Total: -22.27 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -4.71 Total: 14.38 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.62 -9.52 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667675253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.605 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds