Wall clock time and date at job start Fri Apr 10 2020 18:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 120.00175 * 2 1 4 4 H 1.48505 * 109.47251 * 270.00201 * 3 2 1 5 5 H 1.48501 * 109.46947 * 29.99784 * 3 2 1 6 6 H 1.48497 * 109.47509 * 150.00215 * 3 2 1 7 7 C 1.38948 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99971 * 0.02562 * 7 2 1 9 9 N 1.37102 * 120.00622 * 179.97438 * 7 2 1 10 10 C 1.34767 * 120.00179 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00540 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99831 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46852 * 180.02562 * 12 10 9 14 14 C 1.48562 * 111.00206 * 51.04123 * 13 12 10 15 15 C 1.55291 * 107.00855 * 126.11376 * 14 13 12 16 16 C 1.53423 * 101.51330 * 23.03217 * 15 14 13 17 17 H 1.08999 * 111.66154 * 78.22702 * 16 15 14 18 18 C 1.52236 * 114.25795 * 206.33705 * 16 15 14 19 19 N 1.47719 * 106.35969 * 169.62255 * 18 16 15 20 20 C 1.34770 * 119.68352 * 127.96403 * 19 18 16 21 21 O 1.21279 * 120.00243 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00059 * 180.02562 * 20 19 18 23 23 C 1.53003 * 117.49874 * 248.61806 * 22 20 19 24 24 C 1.52995 * 60.00090 * 252.50885 * 23 22 20 25 25 C 1.46598 * 120.63068 * 307.95630 * 19 18 16 26 26 C 1.53953 * 110.58138 * 47.82354 * 25 19 18 27 27 C 1.45909 * 110.99608 * 169.99860 * 13 12 10 28 28 H 1.09001 * 109.30672 * 324.41812 * 27 13 12 29 29 H 0.96994 * 119.99907 * 359.97438 * 1 2 3 30 30 H 0.97004 * 119.99119 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47424 * 60.00024 * 12 10 9 32 32 H 1.08999 * 109.47118 * 300.00201 * 12 10 9 33 33 H 1.09003 * 109.92776 * 245.44955 * 14 13 12 34 34 H 1.08998 * 109.92975 * 6.56925 * 14 13 12 35 35 H 1.09002 * 110.94134 * 140.73088 * 15 14 13 36 36 H 1.08995 * 110.94015 * 264.38844 * 15 14 13 37 37 H 1.08995 * 110.06859 * 288.83581 * 18 16 15 38 38 H 1.09003 * 110.06529 * 50.30461 * 18 16 15 39 39 H 1.08998 * 115.55236 * 34.32136 * 22 20 19 40 40 H 1.09001 * 117.49998 * 359.97438 * 23 22 20 41 41 H 1.09004 * 117.50356 * 145.01503 * 23 22 20 42 42 H 1.09009 * 117.49647 * 252.51495 * 24 23 22 43 43 H 1.08998 * 117.50043 * 107.48864 * 24 23 22 44 44 H 1.09009 * 109.25178 * 287.54329 * 25 19 18 45 45 H 1.08998 * 109.25508 * 168.10916 * 25 19 18 46 46 H 1.09003 * 109.88287 * 189.48133 * 26 25 19 47 47 H 1.08993 * 109.88041 * 68.39556 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4474 -3.4209 0.0000 12 6 5.5608 -2.3705 0.0000 13 7 6.0504 -3.7555 -0.0006 14 6 5.4057 -4.5477 -1.0794 15 6 6.5464 -5.1834 -1.9198 16 6 7.7047 -5.1831 -0.9138 17 1 7.6137 -5.9976 -0.1952 18 6 9.0866 -5.1432 -1.5511 19 7 10.0437 -4.8933 -0.4540 20 6 11.1074 -5.7060 -0.2981 21 8 11.2750 -6.6376 -1.0564 22 6 12.0879 -5.4579 0.8190 23 6 13.4928 -4.9892 0.4348 24 6 13.2747 -6.4157 0.9431 25 6 9.8476 -3.7695 0.4667 26 6 8.3951 -3.7341 0.9759 27 6 7.4895 -3.8012 -0.2372 28 1 7.7649 -3.0120 -0.9368 29 1 -0.4850 0.8400 0.0004 30 1 3.8649 -0.3632 -0.0004 31 1 5.9242 -1.8567 0.8900 32 1 5.9241 -1.8566 -0.8899 33 1 4.7840 -5.3305 -0.6447 34 1 4.7974 -3.8957 -1.7063 35 1 6.2919 -6.2014 -2.2151 36 1 6.7742 -4.5720 -2.7929 37 1 9.3060 -6.0982 -2.0286 38 1 9.1372 -4.3384 -2.2845 39 1 11.6604 -5.0642 1.7411 40 1 13.7080 -4.8607 -0.6260 41 1 13.9897 -4.2868 1.1041 42 1 13.6279 -6.6518 1.9470 43 1 13.3461 -7.2252 0.2168 44 1 10.0694 -2.8368 -0.0521 45 1 10.5233 -3.8777 1.3151 46 1 8.2159 -2.8075 1.5213 47 1 8.2091 -4.5895 1.6252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667675253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:04 Heat of formation + Delta-G solvation = -44.825225 kcal Electronic energy + Delta-G solvation = -27567.485733 eV Core-core repulsion = 23750.458945 eV Total energy + Delta-G solvation = -3817.026788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87452 -40.79770 -39.71725 -37.30729 -36.82722 -35.95679 -33.94231 -33.64643 -32.53619 -30.30560 -28.43605 -26.63896 -25.76205 -23.96391 -23.85059 -23.27132 -22.10877 -21.27155 -21.18744 -20.03746 -19.76867 -18.47264 -17.74919 -17.07749 -16.90674 -16.78785 -16.45431 -16.22509 -15.88859 -15.53876 -15.31313 -15.13893 -14.85421 -14.63024 -14.35893 -14.19816 -14.03055 -13.81316 -13.60218 -13.37947 -13.28227 -12.94608 -12.54035 -12.42651 -12.37269 -12.32408 -12.22678 -12.01182 -11.97850 -11.75325 -11.48881 -11.45584 -11.37821 -11.16475 -10.80515 -10.33731 -10.23273 -9.73444 -9.27088 -8.41628 -6.02735 1.29965 1.35370 1.44721 1.45358 1.90708 1.94288 2.22943 2.63662 2.92945 3.05509 3.14760 3.40856 3.56215 3.67527 3.80376 3.85135 3.99741 4.01550 4.11732 4.18026 4.24303 4.25349 4.30269 4.38828 4.46720 4.51120 4.54698 4.70999 4.73211 4.77158 4.77632 4.85938 4.93428 4.96783 5.04106 5.07717 5.13415 5.25220 5.31303 5.36267 5.51045 5.52672 5.88150 5.95085 6.17173 6.35041 6.59086 6.87570 7.12530 7.38566 7.95346 8.75998 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.027439 B = 0.002528 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.216984 B =11074.384293 C =11705.477319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.229 1.229 7 C -0.327 4.327 8 H 0.054 0.946 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.608 6.608 12 C 0.050 3.950 13 N -0.518 5.518 14 C 0.067 3.933 15 C -0.128 4.128 16 C -0.099 4.099 17 H 0.075 0.925 18 C 0.129 3.871 19 N -0.607 5.607 20 C 0.534 3.466 21 O -0.591 6.591 22 C -0.203 4.203 23 C -0.136 4.136 24 C -0.157 4.157 25 C 0.111 3.889 26 C -0.113 4.113 27 C 0.068 3.932 28 H 0.062 0.938 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.153 0.847 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.125 0.875 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.115 0.885 46 H 0.097 0.903 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.667 -1.845 1.534 30.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.152 1.152 7 C -0.456 4.456 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.236 3.764 11 O -0.492 6.492 12 C -0.081 4.081 13 N -0.242 5.242 14 C -0.060 4.060 15 C -0.167 4.167 16 C -0.119 4.119 17 H 0.094 0.906 18 C 0.006 3.994 19 N -0.338 5.338 20 C 0.324 3.676 21 O -0.472 6.472 22 C -0.224 4.224 23 C -0.173 4.173 24 C -0.195 4.195 25 C -0.011 4.011 26 C -0.152 4.152 27 C -0.040 4.040 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.140 0.860 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.170 0.830 40 H 0.105 0.895 41 H 0.152 0.848 42 H 0.143 0.857 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.133 0.867 46 H 0.116 0.884 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 29.998 -3.103 1.638 30.202 hybrid contribution -0.927 0.935 -0.883 1.586 sum 29.070 -2.169 0.754 29.161 Atomic orbital electron populations 1.69807 1.08195 1.29256 1.50302 1.26144 0.96488 1.02818 0.96080 0.85358 0.79593 0.76608 0.79918 1.18203 1.20085 1.15168 1.18977 0.81463 0.94852 1.50320 0.92813 1.42021 1.05808 1.07558 1.67820 1.20872 0.90898 0.83395 0.81257 1.90567 1.71324 1.32484 1.54801 1.22088 0.89995 0.91700 1.04323 1.63075 1.04718 1.09911 1.46492 1.22873 0.95515 0.96731 0.90924 1.22620 0.94252 1.02122 0.97680 1.22308 0.93842 0.97924 0.97839 0.90630 1.21502 0.86084 1.02826 0.88973 1.48303 1.24428 1.30035 1.31036 1.20351 0.81742 0.80616 0.84879 1.90661 1.76094 1.32485 1.48006 1.22347 0.90253 1.10031 0.99741 1.23027 0.93509 0.98051 1.02715 1.23014 0.98611 0.93800 1.04052 1.22040 0.96678 0.88611 0.93819 1.21705 0.92834 1.04065 0.96605 1.22278 0.86914 0.96931 0.97893 0.91999 0.91162 0.77465 0.86046 0.90327 0.93112 0.94712 0.90214 0.89724 0.90283 0.89581 0.82962 0.89479 0.84773 0.85653 0.89955 0.89388 0.86690 0.88414 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.96 21.66 0.30 -55.95 16 2 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 3 Si 0.97 38.09 27.74 68.60 1.90 39.99 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.23 -7.46 6.52 99.48 0.65 -6.81 16 7 C -0.33 -19.03 10.16 84.04 0.85 -18.17 16 8 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 9 N -0.59 -27.42 5.09 -306.99 -1.56 -28.99 16 10 C 0.45 19.94 7.08 87.66 0.62 20.56 16 11 O -0.61 -33.22 13.54 -3.05 -0.04 -33.26 16 12 C 0.05 1.49 5.52 85.56 0.47 1.97 16 13 N -0.52 -15.36 5.13 -866.77 -4.44 -19.80 16 14 C 0.07 2.22 5.04 86.77 0.44 2.66 16 15 C -0.13 -3.01 6.50 31.52 0.21 -2.81 16 16 C -0.10 -2.12 2.83 -10.09 -0.03 -2.14 16 17 H 0.08 1.89 8.12 -2.39 -0.02 1.87 16 18 C 0.13 2.43 5.94 85.89 0.51 2.94 16 19 N -0.61 -10.28 3.00 -818.04 -2.45 -12.73 16 20 C 0.53 10.84 7.45 87.66 0.65 11.49 16 21 O -0.59 -17.24 15.61 -3.03 -0.05 -17.29 16 22 C -0.20 -2.50 5.14 -11.54 -0.06 -2.56 16 23 C -0.14 -1.24 10.23 30.59 0.31 -0.93 16 24 C -0.16 -1.90 10.04 30.59 0.31 -1.60 16 25 C 0.11 1.16 6.24 86.68 0.54 1.70 16 26 C -0.11 -1.67 6.06 30.44 0.18 -1.49 16 27 C 0.07 1.39 1.76 45.43 0.08 1.47 16 28 H 0.06 1.11 7.42 -2.39 -0.02 1.09 16 29 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 31 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.08 1.93 7.78 -2.39 -0.02 1.91 16 33 H 0.05 1.99 7.86 -2.39 -0.02 1.98 16 34 H 0.03 1.32 6.46 -2.39 -0.02 1.30 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 37 H 0.08 1.79 7.00 -2.39 -0.02 1.78 16 38 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 39 H 0.15 1.04 6.42 -2.39 -0.02 1.03 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.13 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.08 1.43 7.67 -2.39 -0.02 1.41 16 44 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.12 0.66 5.39 -2.39 -0.01 0.64 16 46 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.06 1.15 8.12 -2.39 -0.02 1.13 16 Total: -1.00 -82.28 367.21 -0.40 -82.68 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.39 Total: 32.73 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.56 Total: 12.62 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -8.16 Total: -117.47 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.09 Total: -50.55 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.90 Total: 39.99 kcal Total: -82.28 -0.40 -82.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667675253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.853 kcal (2) G-P(sol) polarization free energy of solvation -82.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds