Wall clock time and date at job start Fri Apr 10 2020 18:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00192 * 2 1 4 4 H 1.48505 * 109.47332 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47469 * 240.00112 * 3 2 1 6 6 H 1.48496 * 109.47434 * 120.00168 * 3 2 1 7 7 C 1.38805 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00309 * 142.02501 * 7 2 1 9 9 N 1.36944 * 120.00140 * 322.02096 * 7 2 1 10 10 C 1.47777 * 125.95859 * 341.07848 * 9 7 2 11 11 C 1.55094 * 104.91464 * 201.57570 * 10 9 7 12 12 C 1.56118 * 101.08219 * 322.94362 * 11 10 9 13 13 H 1.09003 * 112.18960 * 157.74150 * 12 11 10 14 14 C 1.53117 * 106.63997 * 281.14261 * 12 11 10 15 15 N 1.46170 * 109.62846 * 159.76644 * 14 12 11 16 16 C 1.34769 * 120.96177 * 121.19355 * 15 14 12 17 17 O 1.21346 * 120.00326 * 353.58631 * 16 15 14 18 18 C 1.49450 * 120.00069 * 173.58691 * 16 15 14 19 19 O 1.21347 * 120.00280 * 353.54372 * 18 16 15 20 20 N 1.34775 * 120.00220 * 173.54006 * 18 16 15 21 21 C 1.46500 * 120.00303 * 180.02562 * 20 18 16 22 22 C 1.53002 * 109.47172 * 180.02562 * 21 20 18 23 23 C 1.52999 * 117.49762 * 243.74708 * 22 21 20 24 24 C 1.53002 * 117.49739 * 175.08675 * 22 21 20 25 25 C 1.46530 * 118.06177 * 301.50166 * 15 14 12 26 26 C 1.51788 * 110.13056 * 53.46639 * 25 15 14 27 27 C 1.46249 * 125.96608 * 160.76863 * 9 7 2 28 28 H 1.08997 * 105.50300 * 70.59473 * 27 9 7 29 29 H 0.97002 * 120.00335 * 171.24778 * 1 2 3 30 30 H 1.09004 * 110.35150 * 320.43750 * 10 9 7 31 31 H 1.09000 * 110.35085 * 82.61346 * 10 9 7 32 32 H 1.09001 * 111.09555 * 80.88490 * 11 10 9 33 33 H 1.08988 * 111.10471 * 204.98366 * 11 10 9 34 34 H 1.08996 * 109.52968 * 279.95002 * 14 12 11 35 35 H 1.09002 * 109.52651 * 40.16564 * 14 12 11 36 36 H 0.97003 * 120.00208 * 359.97438 * 20 18 16 37 37 H 1.08998 * 109.47258 * 300.00110 * 21 20 18 38 38 H 1.09004 * 109.47246 * 60.00233 * 21 20 18 39 39 H 1.08996 * 115.55339 * 29.41624 * 22 21 20 40 40 H 1.09001 * 117.50272 * 0.02562 * 23 22 21 41 41 H 1.08999 * 117.50098 * 145.01907 * 23 22 21 42 42 H 1.08998 * 117.49725 * 214.97833 * 24 22 21 43 43 H 1.08998 * 117.49974 * 359.97438 * 24 22 21 44 44 H 1.09004 * 109.36199 * 293.26885 * 25 15 14 45 45 H 1.08998 * 109.25440 * 173.60067 * 25 15 14 46 46 H 1.09005 * 108.36228 * 196.92894 * 26 25 15 47 47 H 1.09006 * 108.22512 * 79.73026 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 2.9187 -1.3009 -0.5761 9 7 1.5430 -2.2628 0.7288 10 6 0.5775 -2.1903 1.8452 11 6 0.8060 -3.4925 2.6559 12 6 1.0944 -4.5127 1.5099 13 1 1.6501 -5.3817 1.8625 14 6 -0.2621 -4.8933 0.9101 15 7 -0.0695 -5.4413 -0.4312 16 6 -0.4840 -6.6865 -0.7376 17 8 -0.9194 -7.4122 0.1321 18 6 -0.4074 -7.1737 -2.1483 19 8 -0.0835 -6.4128 -3.0363 20 7 -0.6981 -8.4583 -2.4344 21 6 -0.6225 -8.9360 -3.8173 22 6 -0.9990 -10.4182 -3.8661 23 6 0.0793 -11.4065 -4.3148 24 6 -1.0927 -11.0782 -5.2433 25 6 0.5936 -4.5999 -1.4310 26 6 1.9237 -4.1019 -0.8954 27 6 1.9076 -3.6658 0.5347 28 1 2.9416 -3.7471 0.8697 29 1 -0.4851 -0.8303 -0.1278 30 1 0.7800 -1.3171 2.4654 31 1 -0.4425 -2.1542 1.4625 32 1 1.6649 -3.3956 3.3200 33 1 -0.0888 -3.7703 3.2127 34 1 -0.7438 -5.6390 1.5424 35 1 -0.8931 -4.0069 0.8448 36 1 -0.9567 -9.0668 -1.7246 37 1 -1.3139 -8.3653 -4.4372 38 1 0.3930 -8.8063 -4.1915 39 1 -1.6992 -10.7509 -3.0999 40 1 1.0570 -11.0010 -4.5747 41 1 0.0882 -12.3896 -3.8440 42 1 -1.8542 -11.8454 -5.3829 43 1 -0.8864 -10.4565 -6.1144 44 1 -0.0435 -3.7471 -1.6655 45 1 0.7640 -5.1833 -2.3358 46 1 2.2469 -3.2599 -1.5076 47 1 2.6555 -4.9027 -1.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667695593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:11 Heat of formation + Delta-G solvation = -20.081553 kcal Electronic energy + Delta-G solvation = -28009.865887 eV Core-core repulsion = 24193.912065 eV Total energy + Delta-G solvation = -3815.953822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24189 -40.71886 -39.49101 -38.52829 -37.03299 -35.34244 -34.73510 -33.46154 -31.31716 -29.58388 -28.98579 -27.10088 -25.99616 -24.25834 -23.93286 -23.23750 -22.15811 -22.04231 -21.23272 -20.16401 -19.23023 -18.33326 -18.24145 -17.43257 -17.16812 -16.97979 -16.64611 -16.11776 -15.89581 -15.63677 -15.51802 -15.17922 -14.98190 -14.73773 -14.57039 -14.52511 -14.33978 -14.03775 -13.48555 -13.17852 -12.88979 -12.73505 -12.56833 -12.44906 -12.37000 -12.26748 -12.06250 -11.89248 -11.83357 -11.80424 -11.65488 -11.41200 -11.37094 -11.22360 -10.41232 -10.37756 -10.24469 -9.83233 -8.94314 -8.30949 -5.25784 0.20923 1.16960 1.57997 1.63817 1.83905 1.98236 2.32873 2.65024 2.85278 3.10961 3.18539 3.46559 3.62113 3.65750 3.69538 3.89329 3.96302 4.05268 4.11448 4.16788 4.22108 4.23274 4.37769 4.45862 4.55717 4.59566 4.64783 4.65107 4.77589 4.81907 4.86193 4.93059 5.01395 5.03858 5.08844 5.13222 5.14818 5.26577 5.27039 5.31347 5.35953 5.42346 5.79954 5.91423 6.14584 6.32598 6.57594 6.82202 6.92407 7.73457 8.38126 8.94657 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.022621 B = 0.002896 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.474572 B = 9667.101872 C =10374.674448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.067 4.067 3 Si 1.099 2.901 4 H -0.294 1.294 5 H -0.277 1.277 6 H -0.284 1.284 7 C -0.342 4.342 8 H 0.053 0.947 9 N -0.603 5.603 10 C 0.141 3.859 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.109 0.891 14 C 0.119 3.881 15 N -0.569 5.569 16 C 0.507 3.493 17 O -0.541 6.541 18 C 0.510 3.490 19 O -0.530 6.530 20 N -0.680 5.680 21 C 0.146 3.854 22 C -0.178 4.178 23 C -0.176 4.176 24 C -0.164 4.164 25 C 0.089 3.911 26 C -0.127 4.127 27 C 0.158 3.842 28 H 0.002 0.998 29 H 0.251 0.749 30 H 0.020 0.980 31 H 0.004 0.996 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.421 0.579 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.037 0.963 45 H 0.145 0.855 46 H 0.057 0.943 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.325 -23.409 -4.693 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.265 4.265 3 Si 0.924 3.076 4 H -0.220 1.220 5 H -0.203 1.203 6 H -0.211 1.211 7 C -0.470 4.470 8 H 0.070 0.930 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.152 4.152 12 C -0.113 4.113 13 H 0.127 0.873 14 C -0.003 4.003 15 N -0.300 5.300 16 C 0.290 3.710 17 O -0.420 6.420 18 C 0.292 3.708 19 O -0.408 6.408 20 N -0.332 5.332 21 C 0.024 3.976 22 C -0.196 4.196 23 C -0.213 4.213 24 C -0.202 4.202 25 C -0.033 4.033 26 C -0.167 4.167 27 C 0.052 3.948 28 H 0.020 0.980 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.022 0.978 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.259 0.741 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.118 0.882 44 H 0.055 0.945 45 H 0.162 0.838 46 H 0.075 0.925 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.435 -21.557 -4.836 22.139 hybrid contribution -0.028 -1.142 0.009 1.142 sum -1.463 -22.699 -4.827 23.252 Atomic orbital electron populations 1.70891 1.07996 1.29046 1.48198 1.26832 0.95995 1.04154 0.99564 0.83091 0.74292 0.73016 0.77198 1.22012 1.20252 1.21102 1.19652 1.05235 0.92136 1.30017 0.92952 1.44927 1.52294 1.01240 1.34408 1.21562 0.91808 0.96294 0.88794 1.22976 1.02889 0.93191 0.96165 1.22312 0.95503 0.97986 0.95537 0.87306 1.21671 0.97296 0.98814 0.82529 1.47736 1.55401 1.13554 1.13305 1.20149 0.79412 0.82041 0.89374 1.90706 1.47031 1.54829 1.49399 1.20009 0.78516 0.83646 0.88666 1.90490 1.47210 1.54538 1.48593 1.45747 1.66261 1.09334 1.11897 1.21155 1.02236 0.93422 0.80786 1.22396 1.04512 0.91590 1.01124 1.23198 0.94264 1.00356 1.03479 1.23075 1.01398 1.03028 0.92681 1.22300 0.92851 0.94904 0.93211 1.21121 0.97144 1.00393 0.98013 1.19798 0.96615 0.85018 0.93371 0.97989 0.93961 0.96157 0.97848 0.90136 0.88498 0.87633 0.92362 0.74057 0.90738 0.90789 0.86022 0.88569 0.87520 0.87175 0.88183 0.94479 0.83821 0.92453 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.40 12.96 21.65 0.28 -56.12 16 2 C -0.07 -3.83 4.98 84.86 0.42 -3.41 16 3 Si 1.10 51.62 30.05 68.60 2.06 53.68 16 4 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.34 -19.22 8.87 84.03 0.75 -18.48 16 8 H 0.05 2.99 7.86 -2.91 -0.02 2.97 16 9 N -0.60 -30.08 3.19 -678.21 -2.16 -32.25 16 10 C 0.14 6.46 5.28 86.85 0.46 6.92 16 11 C -0.11 -3.79 6.47 32.39 0.21 -3.58 16 12 C -0.09 -3.10 3.71 -9.79 -0.04 -3.14 16 13 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 14 C 0.12 3.93 5.49 86.48 0.48 4.41 16 15 N -0.57 -19.02 2.94 -826.25 -2.43 -21.45 16 16 C 0.51 15.40 7.75 87.27 0.68 16.07 16 17 O -0.54 -16.92 15.93 -3.23 -0.05 -16.97 16 18 C 0.51 13.73 7.76 87.27 0.68 14.40 16 19 O -0.53 -16.65 13.15 -3.24 -0.04 -16.69 16 20 N -0.68 -13.04 5.55 -464.41 -2.58 -15.61 16 21 C 0.15 2.26 5.96 86.38 0.51 2.78 16 22 C -0.18 -1.87 5.84 -10.79 -0.06 -1.94 16 23 C -0.18 -1.62 10.18 30.62 0.31 -1.30 16 24 C -0.16 -1.42 10.26 30.62 0.31 -1.11 16 25 C 0.09 3.27 6.11 85.98 0.52 3.79 16 26 C -0.13 -4.92 5.60 29.08 0.16 -4.76 16 27 C 0.16 6.50 2.63 43.80 0.12 6.61 16 28 H 0.00 0.10 8.06 -2.39 -0.02 0.08 16 29 H 0.25 15.79 7.29 -92.71 -0.68 15.12 16 30 H 0.02 1.02 8.13 -2.38 -0.02 1.00 16 31 H 0.00 0.19 6.18 -2.39 -0.01 0.17 16 32 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.10 2.67 7.98 -2.39 -0.02 2.65 16 34 H 0.11 3.14 7.00 -2.39 -0.02 3.12 16 35 H 0.06 2.19 6.49 -2.39 -0.02 2.18 16 36 H 0.42 6.78 7.89 -92.71 -0.73 6.05 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.21 7.88 -2.39 -0.02 1.19 16 39 H 0.12 1.09 8.04 -2.39 -0.02 1.07 16 40 H 0.10 0.93 8.03 -2.39 -0.02 0.91 16 41 H 0.11 0.78 8.14 -2.39 -0.02 0.77 16 42 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.15 5.05 4.17 -57.00 -0.24 4.82 16 46 H 0.06 2.55 7.00 -2.38 -0.02 2.53 16 47 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -68.84 369.12 0.70 -68.14 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.12 Total: 20.00 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 5.51 Total: 17.28 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -6.89 Total: -125.43 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.09 Total: -33.66 kcal Atomic # 14 Polarization: 51.62 SS G_CDS: 2.06 Total: 53.68 kcal Total: -68.84 0.70 -68.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667695593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.056 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds