Wall clock time and date at job start Fri Apr 10 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 120.00398 * 2 1 4 4 H 1.48497 * 109.46824 * 239.99791 * 3 2 1 5 5 H 1.48502 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47167 * 120.00112 * 3 2 1 7 7 C 1.38954 * 119.99476 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99552 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00014 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99899 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00051 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00166 * 180.27082 * 10 9 7 13 13 N 1.46893 * 109.47349 * 179.72660 * 12 10 9 14 14 C 1.46904 * 111.00297 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47145 * 179.97438 * 14 13 12 16 16 C 1.31007 * 119.99543 * 127.16239 * 15 14 13 17 17 C 1.50696 * 120.00046 * 7.56103 * 16 15 14 18 18 N 1.46494 * 109.47203 * 127.00473 * 17 16 15 19 19 C 1.34779 * 120.00111 * 179.97438 * 18 17 16 20 20 O 1.21278 * 119.99902 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99924 * 179.97438 * 19 18 17 22 22 H 1.09000 * 110.67389 * 303.23427 * 21 19 18 23 23 C 1.54894 * 110.75607 * 66.67464 * 21 19 18 24 24 C 1.54264 * 104.19479 * 156.25614 * 23 21 19 25 25 H 1.09002 * 117.75935 * 116.75457 * 24 23 21 26 26 C 1.53000 * 118.19985 * 272.20781 * 24 23 21 27 27 C 1.52997 * 60.37574 * 93.61769 * 26 24 23 28 28 H 1.09005 * 119.75532 * 111.12613 * 27 26 24 29 29 C 1.54266 * 118.20277 * 266.38348 * 27 26 24 30 30 H 0.97007 * 119.99600 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99790 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47365 * 299.73020 * 12 10 9 33 33 H 1.09001 * 109.46855 * 59.72926 * 12 10 9 34 34 H 1.00900 * 111.00015 * 56.04899 * 13 12 10 35 35 H 1.08998 * 109.46832 * 300.00084 * 14 13 12 36 36 H 1.09002 * 109.46915 * 59.99719 * 14 13 12 37 37 H 1.07998 * 120.00142 * 307.15669 * 15 14 13 38 38 H 1.07999 * 119.99264 * 187.56038 * 16 15 14 39 39 H 1.09002 * 109.46778 * 247.00622 * 17 16 15 40 40 H 1.08995 * 109.47130 * 7.00086 * 17 16 15 41 41 H 0.96997 * 120.00043 * 359.97438 * 18 17 16 42 42 H 1.08999 * 110.48487 * 274.93324 * 23 21 19 43 43 H 1.09000 * 110.48660 * 37.57753 * 23 21 19 44 44 H 1.09009 * 117.45946 * 346.02017 * 26 24 23 45 45 H 1.08998 * 117.46436 * 201.21592 * 26 24 23 46 46 H 1.09007 * 110.48441 * 329.11002 * 29 27 26 47 47 H 1.09000 * 110.48651 * 206.46987 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8630 -0.0056 13 7 2.1979 -5.9795 -0.0110 14 6 1.4976 -7.2709 -0.0177 15 6 2.5071 -8.3898 -0.0237 16 6 2.4370 -9.3399 0.8756 17 6 1.2545 -9.4100 1.8071 18 7 0.6662 -10.7505 1.7495 19 6 -0.4098 -11.0472 2.5048 20 8 -0.8914 -10.2044 3.2319 21 6 -1.0152 -12.4260 2.4451 22 1 -1.2978 -12.6782 1.4231 23 6 -0.0392 -13.4797 3.0250 24 6 -0.9538 -14.6427 3.4616 25 1 -0.8278 -15.6030 2.9615 26 6 -1.5487 -14.6048 4.8707 27 6 -2.3499 -14.0398 3.6961 28 1 -3.2520 -14.5515 3.3606 29 6 -2.2350 -12.5314 3.3938 30 1 -0.4850 0.8401 -0.0004 31 1 0.3532 -2.3906 0.0005 32 1 0.6168 -4.9249 0.8840 33 1 0.6168 -4.9164 -0.8959 34 1 2.8328 -5.9163 0.7707 35 1 0.8724 -7.3497 0.8717 36 1 0.8729 -7.3408 -0.9082 37 1 3.2882 -8.4084 -0.7692 38 1 3.2267 -10.0729 0.9492 39 1 1.5813 -9.2001 2.8255 40 1 0.5101 -8.6733 1.5053 41 1 1.0512 -11.4244 1.1677 42 1 0.6618 -13.8124 2.2595 43 1 0.4961 -13.0725 3.8828 44 1 -1.1224 -13.8926 5.5774 45 1 -1.8842 -15.5487 5.3003 46 1 -2.0544 -11.9711 4.3112 47 1 -3.1365 -12.1721 2.8974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668989424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:17 Heat of formation + Delta-G solvation = -29.366899 kcal Electronic energy + Delta-G solvation = -25355.756164 eV Core-core repulsion = 21539.399699 eV Total energy + Delta-G solvation = -3816.356465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75094 -38.96728 -38.32206 -37.03408 -35.04848 -33.89344 -33.03997 -32.11948 -31.18762 -28.75481 -28.02671 -26.41547 -24.79865 -23.78960 -23.14602 -21.46092 -20.40397 -20.14322 -19.41983 -18.77411 -17.86489 -17.19522 -17.07165 -16.73198 -15.88723 -15.73539 -15.33119 -14.90246 -14.60834 -14.48739 -14.21086 -13.72595 -13.69184 -13.54750 -13.50712 -13.41173 -13.26998 -12.73375 -12.24883 -12.06360 -11.78667 -11.77291 -11.63155 -11.59381 -11.52448 -11.45781 -11.05476 -10.93135 -10.53321 -10.42678 -10.29730 -10.19670 -10.00372 -9.58877 -9.48387 -9.14992 -8.44617 -8.04578 -7.94173 -6.39762 -3.80736 1.76342 2.33295 2.99303 3.16551 3.21793 3.27323 3.31869 3.92468 3.96500 4.14251 4.16636 4.31011 4.38508 4.55469 4.61000 4.70393 4.74558 4.83346 4.88486 5.00065 5.00676 5.08898 5.17361 5.24029 5.26794 5.32411 5.36868 5.43334 5.58673 5.62810 5.64619 5.71240 5.72872 5.75005 5.84469 5.91590 5.98776 6.09998 6.27275 6.34861 6.51209 7.17884 7.19720 7.56776 7.64796 7.93435 8.07766 8.63029 9.19409 9.55974 10.07429 10.77862 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.026599 B = 0.001629 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.430144 B =17185.987829 C =17925.016044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.664 5.664 14 C 0.069 3.931 15 C -0.108 4.108 16 C -0.192 4.192 17 C 0.137 3.863 18 N -0.724 5.724 19 C 0.518 3.482 20 O -0.536 6.536 21 C -0.113 4.113 22 H 0.104 0.896 23 C -0.084 4.084 24 C -0.169 4.169 25 H 0.113 0.887 26 C -0.152 4.152 27 C -0.166 4.166 28 H 0.112 0.888 29 C -0.078 4.078 30 H 0.272 0.728 31 H 0.393 0.607 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.351 0.649 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.401 0.599 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 -31.216 4.439 31.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.296 5.296 14 C -0.060 4.060 15 C -0.127 4.127 16 C -0.211 4.211 17 C 0.014 3.986 18 N -0.376 5.376 19 C 0.304 3.696 20 O -0.413 6.413 21 C -0.135 4.135 22 H 0.122 0.878 23 C -0.121 4.121 24 C -0.187 4.187 25 H 0.131 0.869 26 C -0.189 4.189 27 C -0.184 4.184 28 H 0.130 0.870 29 C -0.116 4.116 30 H 0.082 0.918 31 H 0.226 0.774 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.170 0.830 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.235 0.765 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.101 0.899 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.722 -30.371 4.280 30.896 hybrid contribution -0.316 0.425 0.468 0.707 sum -4.038 -29.946 4.748 30.588 Atomic orbital electron populations 1.69612 1.05935 1.28258 1.50476 1.25268 0.95641 0.99724 0.97287 0.85905 0.78745 0.80427 0.79060 1.19889 1.20980 1.19921 1.19665 0.93363 0.82253 1.47753 0.87955 1.41852 1.09216 1.04579 1.64306 1.19783 0.88374 0.84703 0.84529 1.90521 1.13749 1.87069 1.55466 1.21690 0.94349 0.90914 1.01333 1.60039 1.18798 0.99432 1.51371 1.21271 0.94898 0.88457 1.01326 1.22969 0.99042 0.94171 0.96538 1.22764 0.98660 1.01878 0.97816 1.20546 0.94173 0.84265 0.99590 1.46012 1.31441 1.14552 1.45568 1.20532 0.79897 0.89725 0.79488 1.90732 1.61284 1.49763 1.39483 1.22512 0.96822 0.91922 1.02208 0.87771 1.21889 0.96385 0.93045 1.00820 1.23195 0.95709 0.99552 1.00231 0.86933 1.23084 1.02328 1.02540 0.90935 1.23267 0.95513 0.95641 1.03941 0.86993 1.21803 0.96613 0.93519 0.99653 0.91819 0.77426 0.93741 0.89514 0.82970 0.93993 0.90135 0.85860 0.86377 0.90963 0.89916 0.76538 0.90438 0.90839 0.88824 0.88288 0.89882 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.52 9.68 -14.93 -0.14 -8.67 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.54 5.29 -10.96 -0.06 -14.60 16 10 C 0.44 10.62 7.82 -10.99 -0.09 10.53 16 11 O -0.58 -16.12 15.78 5.54 0.09 -16.03 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 N -0.66 -10.87 6.11 -116.34 -0.71 -11.58 16 14 C 0.07 0.85 5.77 -4.97 -0.03 0.82 16 15 C -0.11 -1.09 9.77 -36.03 -0.35 -1.44 16 16 C -0.19 -1.62 9.63 -36.03 -0.35 -1.97 16 17 C 0.14 1.31 5.76 -5.20 -0.03 1.28 16 18 N -0.72 -5.71 5.55 -61.48 -0.34 -6.05 16 19 C 0.52 5.07 7.13 -10.98 -0.08 4.99 16 20 O -0.54 -7.66 15.72 5.56 0.09 -7.57 16 21 C -0.11 -0.77 3.29 -89.78 -0.30 -1.06 16 22 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 23 C -0.08 -0.46 6.06 -25.07 -0.15 -0.61 16 24 C -0.17 -0.90 6.94 -89.51 -0.62 -1.52 16 25 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 26 C -0.15 -0.86 10.07 -26.73 -0.27 -1.13 16 27 C -0.17 -1.00 6.94 -89.51 -0.62 -1.62 16 28 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 29 C -0.08 -0.60 5.70 -25.07 -0.14 -0.74 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 34 H 0.35 5.97 8.42 -39.29 -0.33 5.64 16 35 H 0.04 0.51 5.30 -51.93 -0.28 0.23 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.92 5.29 -51.93 -0.27 0.64 16 41 H 0.40 2.02 8.46 -40.82 -0.35 1.67 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 44 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 45 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.80 7.44 -51.93 -0.39 0.41 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -33.74 390.60 -10.00 -43.74 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -7.36 Total: 13.80 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -3.29 Total: 0.24 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.39 Total: -56.33 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.17 Total: -23.60 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.74 -10.00 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668989424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.372 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds