Wall clock time and date at job start Fri Apr 10 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 120.00398 * 2 1 4 4 H 1.48497 * 109.46824 * 239.99791 * 3 2 1 5 5 H 1.48502 * 109.46878 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47167 * 120.00112 * 3 2 1 7 7 C 1.38954 * 119.99476 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99552 * 180.02562 * 7 2 1 9 9 N 1.37099 * 120.00014 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99899 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00051 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00166 * 180.27082 * 10 9 7 13 13 N 1.46893 * 109.47349 * 179.72660 * 12 10 9 14 14 C 1.46904 * 111.00297 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47145 * 179.97438 * 14 13 12 16 16 C 1.31007 * 119.99543 * 127.16239 * 15 14 13 17 17 C 1.50696 * 120.00046 * 7.56103 * 16 15 14 18 18 N 1.46494 * 109.47203 * 127.00473 * 17 16 15 19 19 C 1.34779 * 120.00111 * 179.97438 * 18 17 16 20 20 O 1.21278 * 119.99902 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99924 * 179.97438 * 19 18 17 22 22 H 1.09000 * 110.67389 * 303.23427 * 21 19 18 23 23 C 1.54894 * 110.75607 * 66.67464 * 21 19 18 24 24 C 1.54264 * 104.19479 * 156.25614 * 23 21 19 25 25 H 1.09002 * 117.75935 * 116.75457 * 24 23 21 26 26 C 1.53000 * 118.19985 * 272.20781 * 24 23 21 27 27 C 1.52997 * 60.37574 * 93.61769 * 26 24 23 28 28 H 1.09005 * 119.75532 * 111.12613 * 27 26 24 29 29 C 1.54266 * 118.20277 * 266.38348 * 27 26 24 30 30 H 0.97007 * 119.99600 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99790 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47365 * 299.73020 * 12 10 9 33 33 H 1.09001 * 109.46855 * 59.72926 * 12 10 9 34 34 H 1.00900 * 111.00015 * 56.04899 * 13 12 10 35 35 H 1.08998 * 109.46832 * 300.00084 * 14 13 12 36 36 H 1.09002 * 109.46915 * 59.99719 * 14 13 12 37 37 H 1.07998 * 120.00142 * 307.15669 * 15 14 13 38 38 H 1.07999 * 119.99264 * 187.56038 * 16 15 14 39 39 H 1.09002 * 109.46778 * 247.00622 * 17 16 15 40 40 H 1.08995 * 109.47130 * 7.00086 * 17 16 15 41 41 H 0.96997 * 120.00043 * 359.97438 * 18 17 16 42 42 H 1.08999 * 110.48487 * 274.93324 * 23 21 19 43 43 H 1.09000 * 110.48660 * 37.57753 * 23 21 19 44 44 H 1.09009 * 117.45946 * 346.02017 * 26 24 23 45 45 H 1.08998 * 117.46436 * 201.21592 * 26 24 23 46 46 H 1.09007 * 110.48441 * 329.11002 * 29 27 26 47 47 H 1.09000 * 110.48651 * 206.46987 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6962 -1.2125 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0010 12 6 1.2435 -4.8630 -0.0056 13 7 2.1979 -5.9795 -0.0110 14 6 1.4976 -7.2709 -0.0177 15 6 2.5071 -8.3898 -0.0237 16 6 2.4370 -9.3399 0.8756 17 6 1.2545 -9.4100 1.8071 18 7 0.6662 -10.7505 1.7495 19 6 -0.4098 -11.0472 2.5048 20 8 -0.8914 -10.2044 3.2319 21 6 -1.0152 -12.4260 2.4451 22 1 -1.2978 -12.6782 1.4231 23 6 -0.0392 -13.4797 3.0250 24 6 -0.9538 -14.6427 3.4616 25 1 -0.8278 -15.6030 2.9615 26 6 -1.5487 -14.6048 4.8707 27 6 -2.3499 -14.0398 3.6961 28 1 -3.2520 -14.5515 3.3606 29 6 -2.2350 -12.5314 3.3938 30 1 -0.4850 0.8401 -0.0004 31 1 0.3532 -2.3906 0.0005 32 1 0.6168 -4.9249 0.8840 33 1 0.6168 -4.9164 -0.8959 34 1 2.8328 -5.9163 0.7707 35 1 0.8724 -7.3497 0.8717 36 1 0.8729 -7.3408 -0.9082 37 1 3.2882 -8.4084 -0.7692 38 1 3.2267 -10.0729 0.9492 39 1 1.5813 -9.2001 2.8255 40 1 0.5101 -8.6733 1.5053 41 1 1.0512 -11.4244 1.1677 42 1 0.6618 -13.8124 2.2595 43 1 0.4961 -13.0725 3.8828 44 1 -1.1224 -13.8926 5.5774 45 1 -1.8842 -15.5487 5.3003 46 1 -2.0544 -11.9711 4.3112 47 1 -3.1365 -12.1721 2.8974 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668989424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:17 Heat of formation + Delta-G solvation = -53.915049 kcal Electronic energy + Delta-G solvation = -25356.820651 eV Core-core repulsion = 21539.399699 eV Total energy + Delta-G solvation = -3817.420952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40674 -40.20001 -39.57294 -38.07714 -36.26778 -35.75650 -34.01077 -33.26677 -32.72370 -29.42413 -29.13587 -27.53644 -26.37518 -24.57431 -24.34120 -22.00243 -21.21669 -21.05176 -20.60741 -20.00078 -19.59713 -18.16049 -17.90471 -17.41504 -17.23452 -16.69391 -16.63927 -16.40685 -15.98999 -15.59239 -15.42463 -15.07883 -14.84016 -14.65176 -14.22703 -14.13292 -14.04958 -13.85413 -13.57911 -13.48773 -13.18624 -12.88951 -12.69872 -12.58806 -12.44272 -12.29041 -12.14835 -12.12573 -12.00851 -11.85293 -11.51478 -11.03533 -10.93222 -10.56663 -10.38789 -10.37322 -10.03658 -9.93928 -9.33584 -8.47681 -5.97073 0.99588 1.39566 1.41361 1.52785 1.57536 2.02661 2.27996 2.32186 2.68569 2.98473 3.19206 3.44083 3.53426 3.70751 3.77413 3.82478 4.03743 4.09710 4.15606 4.22337 4.25344 4.28759 4.41646 4.42881 4.48912 4.52138 4.52767 4.62592 4.69249 4.72539 4.76314 4.91057 4.99838 5.03504 5.12072 5.18413 5.31658 5.35642 5.39374 5.43090 5.56959 5.71069 5.85775 6.06321 6.36197 6.54085 6.58003 7.10483 7.23012 7.53690 8.08674 8.69439 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.026599 B = 0.001629 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.430144 B =17185.987829 C =17925.016044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.338 4.338 8 H 0.080 0.920 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.063 3.937 13 N -0.676 5.676 14 C 0.071 3.929 15 C -0.124 4.124 16 C -0.163 4.163 17 C 0.136 3.864 18 N -0.709 5.709 19 C 0.514 3.486 20 O -0.589 6.589 21 C -0.106 4.106 22 H 0.129 0.871 23 C -0.081 4.081 24 C -0.159 4.159 25 H 0.132 0.868 26 C -0.160 4.160 27 C -0.171 4.171 28 H 0.123 0.877 29 C -0.083 4.083 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.345 0.655 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.418 0.582 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.080 0.920 45 H 0.113 0.887 46 H 0.054 0.946 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.980 -33.248 3.629 33.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.209 5.209 10 C 0.224 3.776 11 O -0.509 6.509 12 C -0.069 4.069 13 N -0.308 5.308 14 C -0.056 4.056 15 C -0.143 4.143 16 C -0.182 4.182 17 C 0.012 3.988 18 N -0.361 5.361 19 C 0.301 3.699 20 O -0.469 6.469 21 C -0.127 4.127 22 H 0.147 0.853 23 C -0.119 4.119 24 C -0.177 4.177 25 H 0.150 0.850 26 C -0.197 4.197 27 C -0.189 4.189 28 H 0.141 0.859 29 C -0.121 4.121 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.163 0.837 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.146 0.854 38 H 0.164 0.836 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.255 0.745 42 H 0.123 0.877 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.131 0.869 46 H 0.073 0.927 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.578 -32.452 3.440 32.829 hybrid contribution -0.381 0.994 0.764 1.310 sum -3.959 -31.458 4.204 31.984 Atomic orbital electron populations 1.69676 1.06893 1.29422 1.50094 1.26081 0.96567 1.02511 0.96118 0.84955 0.77732 0.76449 0.78987 1.19612 1.19440 1.19675 1.19668 0.92788 0.84029 1.50227 0.90197 1.41929 1.09339 1.04733 1.64924 1.20828 0.88261 0.86125 0.82344 1.90485 1.15769 1.87951 1.56723 1.21550 0.94064 0.88257 1.03035 1.60055 1.18961 1.00551 1.51276 1.21312 0.95438 0.87159 1.01729 1.22842 0.99259 0.94261 0.97967 1.22837 0.98136 1.01519 0.95721 1.20441 0.94336 0.84819 0.99181 1.45867 1.30733 1.14316 1.45162 1.21119 0.79745 0.90405 0.78592 1.90712 1.62915 1.51540 1.41750 1.22538 0.96501 0.90291 1.03337 0.85313 1.21918 0.96433 0.92530 1.01022 1.23309 0.94658 1.00071 0.99647 0.85010 1.23151 1.02559 1.02855 0.91089 1.23247 0.96610 0.94429 1.04646 0.85861 1.21783 0.97065 0.94579 0.98697 0.91255 0.76985 0.91926 0.87635 0.83679 0.93693 0.89585 0.85402 0.83649 0.92192 0.91526 0.74451 0.87728 0.92313 0.90134 0.86882 0.92749 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.47 13.05 21.66 0.28 -50.19 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 3 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.34 -19.56 9.68 84.04 0.81 -18.75 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 9 N -0.57 -30.14 5.29 -306.98 -1.62 -31.76 16 10 C 0.44 21.39 7.82 87.66 0.69 22.08 16 11 O -0.62 -35.25 15.78 -3.08 -0.05 -35.30 16 12 C 0.06 2.26 6.17 85.56 0.53 2.78 16 13 N -0.68 -21.78 6.11 -522.00 -3.19 -24.98 16 14 C 0.07 1.67 5.77 85.56 0.49 2.17 16 15 C -0.12 -2.29 9.77 25.64 0.25 -2.04 16 16 C -0.16 -2.36 9.63 25.64 0.25 -2.12 16 17 C 0.14 2.45 5.76 85.63 0.49 2.94 16 18 N -0.71 -10.00 5.55 -466.81 -2.59 -12.59 16 19 C 0.51 9.80 7.13 87.66 0.63 10.43 16 20 O -0.59 -17.46 15.72 -3.02 -0.05 -17.51 16 21 C -0.11 -1.28 3.29 -10.25 -0.03 -1.31 16 22 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 23 C -0.08 -0.71 6.06 31.67 0.19 -0.52 16 24 C -0.16 -1.32 6.94 -10.07 -0.07 -1.39 16 25 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 26 C -0.16 -1.65 10.07 30.59 0.31 -1.34 16 27 C -0.17 -1.87 6.94 -10.07 -0.07 -1.94 16 28 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 29 C -0.08 -1.28 5.70 31.67 0.18 -1.10 16 30 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 31 H 0.40 19.85 7.90 -92.71 -0.73 19.12 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 34 H 0.34 11.74 8.42 -89.69 -0.76 10.98 16 35 H 0.05 1.05 5.30 -2.39 -0.01 1.03 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.45 5.29 -2.39 -0.01 1.44 16 41 H 0.42 2.94 8.46 -92.71 -0.78 2.16 16 42 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.06 0.71 8.04 -2.39 -0.02 0.69 16 44 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.05 1.14 7.44 -2.38 -0.02 1.12 16 47 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -75.19 390.60 -1.35 -76.53 By element: Atomic # 1 Polarization: 41.88 SS G_CDS: -1.27 Total: 40.61 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.11 Total: 9.66 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -7.12 Total: -119.52 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -0.10 Total: -52.80 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -75.19 -1.35 -76.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668989424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.619 kcal (2) G-P(sol) polarization free energy of solvation -75.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds