Wall clock time and date at job start Fri Apr 10 2020 18:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48503 * 109.47478 * 269.99598 * 3 2 1 5 5 H 1.48506 * 109.47229 * 29.99892 * 3 2 1 6 6 H 1.48506 * 109.47352 * 149.99640 * 3 2 1 7 7 C 1.38957 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99871 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99625 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99638 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99944 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99807 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47179 * 180.02562 * 12 10 9 14 14 C 1.46897 * 111.00448 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.47427 * 180.02562 * 14 13 12 16 16 C 1.30997 * 120.00110 * 124.99989 * 15 14 13 17 17 C 1.50704 * 119.99968 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.46959 * 125.00084 * 17 16 15 19 19 C 1.34775 * 119.99495 * 179.97438 * 18 17 16 20 20 O 1.21282 * 120.00610 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.99674 * 179.97438 * 19 18 17 22 22 H 1.08997 * 110.67436 * 303.23655 * 21 19 18 23 23 C 1.54899 * 110.91224 * 66.58453 * 21 19 18 24 24 C 1.54266 * 104.19319 * 156.32782 * 23 21 19 25 25 H 1.09001 * 117.40925 * 116.36658 * 24 23 21 26 26 C 1.52995 * 118.20016 * 272.20846 * 24 23 21 27 27 C 1.52998 * 60.37756 * 93.61900 * 26 24 23 28 28 H 1.09006 * 119.75237 * 111.12212 * 27 26 24 29 29 C 1.54266 * 118.19854 * 266.38170 * 27 26 24 30 30 H 0.97000 * 120.00307 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00293 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46952 * 60.00399 * 12 10 9 33 33 H 1.08997 * 109.47416 * 300.00533 * 12 10 9 34 34 H 1.00904 * 111.00028 * 303.95901 * 13 12 10 35 35 H 1.09008 * 109.47051 * 60.00026 * 14 13 12 36 36 H 1.08996 * 109.46822 * 300.00424 * 14 13 12 37 37 H 1.08005 * 120.00175 * 304.99774 * 15 14 13 38 38 H 1.07999 * 120.00311 * 0.02562 * 16 15 14 39 39 H 1.08996 * 109.47218 * 4.99575 * 17 16 15 40 40 H 1.09008 * 109.47121 * 245.00250 * 17 16 15 41 41 H 0.96994 * 120.00318 * 359.97438 * 18 17 16 42 42 H 1.08998 * 110.47995 * 275.00355 * 23 21 19 43 43 H 1.08993 * 110.48304 * 37.51633 * 23 21 19 44 44 H 1.08997 * 117.46305 * 346.02072 * 26 24 23 45 45 H 1.09005 * 117.45984 * 201.21992 * 26 24 23 46 46 H 1.09000 * 110.48706 * 206.46812 * 29 27 26 47 47 H 1.08997 * 110.48530 * 328.97927 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5607 -2.3706 0.0011 13 7 6.0504 -3.7556 0.0017 14 6 7.5188 -3.7948 0.0023 15 6 7.9830 -5.2285 0.0023 16 6 8.8043 -5.6511 -0.9267 17 6 9.2680 -7.0850 -0.9270 18 7 8.9696 -7.6944 -2.2254 19 6 9.2979 -8.9808 -2.4573 20 8 9.8399 -9.6341 -1.5910 21 6 8.9904 -9.6080 -3.7926 22 1 7.9263 -9.5335 -4.0169 23 6 9.8351 -8.9577 -4.9165 24 6 9.8899 -10.0346 -6.0197 25 1 9.4242 -9.7973 -6.9762 26 6 11.0080 -11.0771 -5.9574 27 6 9.6491 -11.3870 -5.3263 28 1 9.0061 -12.1459 -5.7720 29 6 9.4563 -11.0847 -3.8258 30 1 -0.4850 0.8400 -0.0004 31 1 3.8648 -0.3633 -0.0004 32 1 5.9240 -1.8560 0.8907 33 1 5.9240 -1.8575 -0.8893 34 1 5.6748 -4.2716 0.7832 35 1 7.8954 -3.2906 0.8924 36 1 7.8961 -3.2911 -0.8876 37 1 7.6387 -5.9077 0.7682 38 1 9.1490 -4.9719 -1.6924 39 1 8.7510 -7.6342 -0.1403 40 1 10.3428 -7.1193 -0.7479 41 1 8.5358 -7.1721 -2.9181 42 1 9.3472 -8.0563 -5.2872 43 1 10.8373 -8.7271 -4.5554 44 1 11.8419 -10.8802 -5.2837 45 1 11.2632 -11.5962 -6.8813 46 1 8.6922 -11.7355 -3.4007 47 1 10.3977 -11.2021 -3.2891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668989425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:20 Heat of formation + Delta-G solvation = -30.927095 kcal Electronic energy + Delta-G solvation = -25099.343246 eV Core-core repulsion = 21282.919126 eV Total energy + Delta-G solvation = -3816.424120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.70907 -38.89474 -38.53791 -36.81913 -35.31013 -33.98525 -33.09396 -32.12902 -31.67022 -28.84513 -28.50003 -26.39799 -24.56824 -23.61498 -22.49401 -21.41201 -20.59945 -20.12340 -19.80271 -19.32334 -18.33674 -17.36863 -16.86340 -16.39460 -16.10933 -15.67322 -15.52886 -14.99112 -14.69672 -14.51788 -14.11034 -13.90379 -13.74750 -13.63912 -13.47719 -13.28398 -13.06263 -12.66570 -12.45599 -12.15865 -12.01641 -11.84409 -11.77008 -11.72970 -11.58267 -11.48356 -11.25474 -11.18324 -10.61869 -10.50239 -10.28546 -10.00571 -9.99801 -9.61700 -9.59379 -9.23822 -8.62878 -8.22075 -8.16893 -6.33233 -3.84837 1.77461 2.34645 3.00174 3.02976 3.04808 3.13130 3.20329 3.71053 4.00321 4.07437 4.13618 4.21112 4.35220 4.52794 4.63965 4.72820 4.76984 4.79712 4.86947 4.94285 5.03674 5.13363 5.17038 5.21179 5.27180 5.28620 5.35839 5.37015 5.42302 5.49334 5.59477 5.61124 5.68016 5.74638 5.75769 5.78577 5.89655 5.93979 6.09816 6.36626 6.51792 7.01117 7.21819 7.49658 7.55893 7.94138 8.12120 8.57337 8.92655 9.39973 9.79978 10.79855 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020815 B = 0.001617 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.831423 B =17309.191405 C =17897.649119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.564 6.564 12 C 0.048 3.952 13 N -0.665 5.665 14 C 0.082 3.918 15 C -0.112 4.112 16 C -0.182 4.182 17 C 0.152 3.848 18 N -0.724 5.724 19 C 0.521 3.479 20 O -0.542 6.542 21 C -0.115 4.115 22 H 0.106 0.894 23 C -0.084 4.084 24 C -0.168 4.168 25 H 0.114 0.886 26 C -0.151 4.151 27 C -0.167 4.167 28 H 0.112 0.888 29 C -0.077 4.077 30 H 0.273 0.727 31 H 0.371 0.629 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.352 0.648 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.404 0.596 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.489 -14.286 -9.081 29.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.446 6.446 12 C -0.085 4.085 13 N -0.298 5.298 14 C -0.046 4.046 15 C -0.131 4.131 16 C -0.202 4.202 17 C 0.029 3.971 18 N -0.376 5.376 19 C 0.307 3.693 20 O -0.419 6.419 21 C -0.136 4.136 22 H 0.124 0.876 23 C -0.122 4.122 24 C -0.186 4.186 25 H 0.132 0.868 26 C -0.188 4.188 27 C -0.185 4.185 28 H 0.130 0.870 29 C -0.115 4.115 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.172 0.828 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.239 0.761 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.093 0.907 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 24.184 -15.402 -9.104 30.083 hybrid contribution 0.416 2.073 0.541 2.183 sum 24.600 -13.328 -8.563 29.260 Atomic orbital electron populations 1.69620 1.05650 1.27521 1.49268 1.25043 0.95496 0.97985 0.97619 0.86663 0.79732 0.84017 0.78900 1.19590 1.20171 1.19547 1.19439 0.79237 0.96658 1.48151 0.86275 1.42203 1.07543 1.06142 1.67063 1.19691 0.88161 0.84585 0.84085 1.90570 1.69413 1.30941 1.53694 1.21724 0.95141 0.90305 1.01357 1.60119 1.05307 1.12784 1.51560 1.21085 0.88923 0.93662 1.00976 1.22869 0.94890 0.97077 0.98263 1.22736 1.01075 0.95943 1.00411 1.20307 1.00703 0.90594 0.85494 1.46041 1.62370 1.12382 1.16793 1.20520 0.77954 0.81503 0.89340 1.90701 1.42460 1.61999 1.46715 1.22526 1.02325 0.96593 0.92170 0.87597 1.21892 1.00031 0.97337 0.92908 1.23197 1.04816 0.90755 0.99865 0.86848 1.23068 0.92096 1.01294 1.02346 1.23271 1.00489 0.99692 0.95015 0.86969 1.21786 1.02727 0.93272 0.93678 0.91591 0.79679 0.93664 0.89422 0.82845 0.94262 0.90482 0.86886 0.86568 0.91086 0.90928 0.76146 0.90317 0.90933 0.88888 0.88307 0.90674 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 13.96 55.50 0.77 -24.81 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 7 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 8 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 9 N -0.59 -13.90 5.09 -10.96 -0.06 -13.95 16 10 C 0.45 10.06 7.82 -10.98 -0.09 9.98 16 11 O -0.56 -15.08 15.78 5.55 0.09 -14.99 16 12 C 0.05 0.76 6.17 -4.98 -0.03 0.73 16 13 N -0.67 -9.88 6.11 -116.34 -0.71 -10.59 16 14 C 0.08 0.88 6.12 -4.98 -0.03 0.85 16 15 C -0.11 -1.07 9.38 -36.03 -0.34 -1.41 16 16 C -0.18 -1.51 9.24 -36.02 -0.33 -1.85 16 17 C 0.15 1.34 6.11 -5.19 -0.03 1.31 16 18 N -0.72 -6.07 5.55 -61.47 -0.34 -6.41 16 19 C 0.52 5.20 7.14 -10.99 -0.08 5.12 16 20 O -0.54 -7.46 15.73 5.56 0.09 -7.37 16 21 C -0.11 -0.85 3.28 -89.77 -0.29 -1.15 16 22 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 23 C -0.08 -0.51 6.07 -25.07 -0.15 -0.66 16 24 C -0.17 -1.01 6.94 -89.51 -0.62 -1.63 16 25 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 26 C -0.15 -0.89 10.07 -26.73 -0.27 -1.16 16 27 C -0.17 -1.08 6.94 -89.51 -0.62 -1.70 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 29 C -0.08 -0.61 5.69 -25.07 -0.14 -0.75 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.35 5.44 8.42 -39.29 -0.33 5.11 16 35 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 37 H 0.11 1.07 7.84 -52.48 -0.41 0.66 16 38 H 0.12 0.85 7.84 -52.49 -0.41 0.43 16 39 H 0.07 0.71 7.79 -51.93 -0.40 0.30 16 40 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.40 2.60 8.46 -40.82 -0.35 2.26 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 44 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.77 7.45 -51.93 -0.39 0.39 16 LS Contribution 391.99 15.07 5.91 5.91 Total: -1.00 -34.44 391.99 -9.80 -44.24 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -7.55 Total: 13.61 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.28 Total: -0.06 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.33 Total: -55.76 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.17 Total: -22.36 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.44 -9.80 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668989425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.315 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds