Wall clock time and date at job start Fri Apr 10 2020 18:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48503 * 109.47478 * 269.99598 * 3 2 1 5 5 H 1.48506 * 109.47229 * 29.99892 * 3 2 1 6 6 H 1.48506 * 109.47352 * 149.99640 * 3 2 1 7 7 C 1.38957 * 119.99856 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99871 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99625 * 179.97438 * 7 2 1 10 10 C 1.34781 * 119.99638 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99944 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99807 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47179 * 180.02562 * 12 10 9 14 14 C 1.46897 * 111.00448 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.47427 * 180.02562 * 14 13 12 16 16 C 1.30997 * 120.00110 * 124.99989 * 15 14 13 17 17 C 1.50704 * 119.99968 * 180.02562 * 16 15 14 18 18 N 1.46501 * 109.46959 * 125.00084 * 17 16 15 19 19 C 1.34775 * 119.99495 * 179.97438 * 18 17 16 20 20 O 1.21282 * 120.00610 * 0.02562 * 19 18 17 21 21 C 1.50702 * 119.99674 * 179.97438 * 19 18 17 22 22 H 1.08997 * 110.67436 * 303.23655 * 21 19 18 23 23 C 1.54899 * 110.91224 * 66.58453 * 21 19 18 24 24 C 1.54266 * 104.19319 * 156.32782 * 23 21 19 25 25 H 1.09001 * 117.40925 * 116.36658 * 24 23 21 26 26 C 1.52995 * 118.20016 * 272.20846 * 24 23 21 27 27 C 1.52998 * 60.37756 * 93.61900 * 26 24 23 28 28 H 1.09006 * 119.75237 * 111.12212 * 27 26 24 29 29 C 1.54266 * 118.19854 * 266.38170 * 27 26 24 30 30 H 0.97000 * 120.00307 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00293 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46952 * 60.00399 * 12 10 9 33 33 H 1.08997 * 109.47416 * 300.00533 * 12 10 9 34 34 H 1.00904 * 111.00028 * 303.95901 * 13 12 10 35 35 H 1.09008 * 109.47051 * 60.00026 * 14 13 12 36 36 H 1.08996 * 109.46822 * 300.00424 * 14 13 12 37 37 H 1.08005 * 120.00175 * 304.99774 * 15 14 13 38 38 H 1.07999 * 120.00311 * 0.02562 * 16 15 14 39 39 H 1.08996 * 109.47218 * 4.99575 * 17 16 15 40 40 H 1.09008 * 109.47121 * 245.00250 * 17 16 15 41 41 H 0.96994 * 120.00318 * 359.97438 * 18 17 16 42 42 H 1.08998 * 110.47995 * 275.00355 * 23 21 19 43 43 H 1.08993 * 110.48304 * 37.51633 * 23 21 19 44 44 H 1.08997 * 117.46305 * 346.02072 * 26 24 23 45 45 H 1.09005 * 117.45984 * 201.21992 * 26 24 23 46 46 H 1.09000 * 110.48706 * 206.46812 * 29 27 26 47 47 H 1.08997 * 110.48530 * 328.97927 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5607 -2.3706 0.0011 13 7 6.0504 -3.7556 0.0017 14 6 7.5188 -3.7948 0.0023 15 6 7.9830 -5.2285 0.0023 16 6 8.8043 -5.6511 -0.9267 17 6 9.2680 -7.0850 -0.9270 18 7 8.9696 -7.6944 -2.2254 19 6 9.2979 -8.9808 -2.4573 20 8 9.8399 -9.6341 -1.5910 21 6 8.9904 -9.6080 -3.7926 22 1 7.9263 -9.5335 -4.0169 23 6 9.8351 -8.9577 -4.9165 24 6 9.8899 -10.0346 -6.0197 25 1 9.4242 -9.7973 -6.9762 26 6 11.0080 -11.0771 -5.9574 27 6 9.6491 -11.3870 -5.3263 28 1 9.0061 -12.1459 -5.7720 29 6 9.4563 -11.0847 -3.8258 30 1 -0.4850 0.8400 -0.0004 31 1 3.8648 -0.3633 -0.0004 32 1 5.9240 -1.8560 0.8907 33 1 5.9240 -1.8575 -0.8893 34 1 5.6748 -4.2716 0.7832 35 1 7.8954 -3.2906 0.8924 36 1 7.8961 -3.2911 -0.8876 37 1 7.6387 -5.9077 0.7682 38 1 9.1490 -4.9719 -1.6924 39 1 8.7510 -7.6342 -0.1403 40 1 10.3428 -7.1193 -0.7479 41 1 8.5358 -7.1721 -2.9181 42 1 9.3472 -8.0563 -5.2872 43 1 10.8373 -8.7271 -4.5554 44 1 11.8419 -10.8802 -5.2837 45 1 11.2632 -11.5962 -6.8813 46 1 8.6922 -11.7355 -3.4007 47 1 10.3977 -11.2021 -3.2891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668989425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:19 Heat of formation + Delta-G solvation = -57.032401 kcal Electronic energy + Delta-G solvation = -25100.475257 eV Core-core repulsion = 21282.919126 eV Total energy + Delta-G solvation = -3817.556131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.38720 -40.30323 -39.53392 -37.76904 -36.36289 -35.85261 -34.00655 -33.71288 -32.75637 -29.79511 -29.18155 -27.69166 -25.89574 -24.60273 -23.37996 -21.99942 -21.42693 -21.19508 -20.65065 -20.52868 -20.06918 -18.08603 -17.87143 -17.37990 -17.09197 -16.93496 -16.62789 -16.33655 -15.77728 -15.52424 -15.32176 -15.03467 -14.90030 -14.63530 -14.25831 -14.21015 -14.06881 -14.02737 -13.86731 -13.29033 -13.07930 -12.92689 -12.72659 -12.57823 -12.40753 -12.29192 -12.17252 -12.03992 -11.98664 -11.95563 -11.50974 -11.05384 -10.94756 -10.57903 -10.44768 -10.38143 -10.24601 -10.01229 -9.26754 -8.40963 -6.02235 1.04939 1.31073 1.36839 1.45779 1.56829 1.96101 2.23880 2.34771 2.68631 2.79731 3.15413 3.44217 3.50539 3.70099 3.76767 3.82488 4.06294 4.10176 4.16980 4.21191 4.24408 4.40014 4.43143 4.47038 4.48941 4.52397 4.58386 4.62038 4.66936 4.69403 4.73612 4.87582 4.90810 5.02050 5.11838 5.18783 5.30757 5.35802 5.42889 5.52551 5.66876 5.77897 5.91249 6.05155 6.35399 6.52119 6.60054 6.88361 7.20251 7.40058 7.96951 8.76712 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020815 B = 0.001617 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.831423 B =17309.191405 C =17897.649119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.967 3.033 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.230 1.230 7 C -0.331 4.331 8 H 0.054 0.946 9 N -0.590 5.590 10 C 0.447 3.553 11 O -0.616 6.616 12 C 0.062 3.938 13 N -0.686 5.686 14 C 0.088 3.912 15 C -0.128 4.128 16 C -0.162 4.162 17 C 0.151 3.849 18 N -0.714 5.714 19 C 0.517 3.483 20 O -0.586 6.586 21 C -0.110 4.110 22 H 0.121 0.879 23 C -0.080 4.080 24 C -0.164 4.164 25 H 0.128 0.872 26 C -0.153 4.153 27 C -0.173 4.173 28 H 0.121 0.879 29 C -0.080 4.080 30 H 0.279 0.721 31 H 0.391 0.609 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.344 0.656 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.136 0.864 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.416 0.584 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.070 0.930 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.335 -11.862 -10.419 31.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.786 3.214 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.153 1.153 7 C -0.460 4.460 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.235 3.765 11 O -0.501 6.501 12 C -0.070 4.070 13 N -0.318 5.318 14 C -0.040 4.040 15 C -0.147 4.147 16 C -0.181 4.181 17 C 0.028 3.972 18 N -0.366 5.366 19 C 0.305 3.695 20 O -0.467 6.467 21 C -0.131 4.131 22 H 0.138 0.862 23 C -0.118 4.118 24 C -0.182 4.182 25 H 0.146 0.854 26 C -0.189 4.189 27 C -0.191 4.191 28 H 0.139 0.861 29 C -0.118 4.118 30 H 0.089 0.911 31 H 0.226 0.774 32 H 0.096 0.904 33 H 0.136 0.864 34 H 0.162 0.838 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.154 0.846 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.253 0.747 42 H 0.117 0.883 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.131 0.869 46 H 0.089 0.911 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.060 -12.962 -10.460 31.775 hybrid contribution -0.493 1.150 0.969 1.583 sum 26.567 -11.811 -9.491 30.584 Atomic orbital electron populations 1.69808 1.08213 1.29280 1.50226 1.26143 0.96474 1.02797 0.95983 0.85342 0.79486 0.76543 0.79981 1.18075 1.20137 1.15299 1.19015 0.81606 0.94913 1.50501 0.92810 1.42023 1.05757 1.07649 1.67752 1.21048 0.91137 0.83264 0.81089 1.90548 1.71475 1.32886 1.55173 1.21651 0.89334 0.91788 1.04244 1.60133 1.08035 1.12082 1.51594 1.21128 0.86114 0.94350 1.02409 1.22829 0.96002 0.96935 0.98975 1.22758 0.99911 0.95422 1.00030 1.20267 1.00565 0.91012 0.85356 1.45983 1.61671 1.12056 1.16888 1.20995 0.77107 0.81646 0.89776 1.90681 1.44607 1.63098 1.48274 1.22548 1.03352 0.96091 0.91157 0.86152 1.21899 0.99467 0.98108 0.92344 1.23300 1.04533 0.90173 1.00185 0.85422 1.23140 0.91653 1.01466 1.02684 1.23261 1.01339 1.00624 0.93915 0.86070 1.21756 1.01505 0.93829 0.94700 0.91143 0.77379 0.90374 0.86433 0.83811 0.92712 0.88921 0.87536 0.84636 0.92613 0.90921 0.74746 0.88333 0.91781 0.89661 0.86876 0.91129 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 13.96 21.67 0.30 -55.78 16 2 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 3 Si 0.97 38.01 27.74 68.60 1.90 39.91 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 6 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 7 C -0.33 -19.29 10.16 84.04 0.85 -18.44 16 8 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 9 N -0.59 -27.30 5.09 -306.98 -1.56 -28.86 16 10 C 0.45 19.74 7.82 87.66 0.69 20.42 16 11 O -0.62 -33.97 15.78 -3.06 -0.05 -34.02 16 12 C 0.06 1.77 6.17 85.56 0.53 2.30 16 13 N -0.69 -18.84 6.11 -522.00 -3.19 -22.03 16 14 C 0.09 1.58 6.12 85.56 0.52 2.10 16 15 C -0.13 -2.20 9.38 25.65 0.24 -1.96 16 16 C -0.16 -2.31 9.24 25.65 0.24 -2.07 16 17 C 0.15 2.54 6.11 85.63 0.52 3.06 16 18 N -0.71 -11.17 5.55 -466.77 -2.59 -13.76 16 19 C 0.52 10.25 7.14 87.66 0.63 10.87 16 20 O -0.59 -16.74 15.73 -3.04 -0.05 -16.78 16 21 C -0.11 -1.55 3.28 -10.24 -0.03 -1.59 16 22 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 23 C -0.08 -0.85 6.07 31.67 0.19 -0.65 16 24 C -0.16 -1.65 6.94 -10.07 -0.07 -1.72 16 25 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 26 C -0.15 -1.63 10.07 30.59 0.31 -1.32 16 27 C -0.17 -2.09 6.94 -10.07 -0.07 -2.16 16 28 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 29 C -0.08 -1.28 5.69 31.67 0.18 -1.10 16 30 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 31 H 0.39 14.73 5.76 -92.71 -0.53 14.19 16 32 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.12 2.72 8.14 -2.39 -0.02 2.71 16 34 H 0.34 10.34 8.42 -89.69 -0.76 9.59 16 35 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.09 1.40 7.79 -2.39 -0.02 1.38 16 37 H 0.11 1.95 7.84 -2.91 -0.02 1.93 16 38 H 0.14 1.45 7.84 -2.91 -0.02 1.43 16 39 H 0.06 1.12 7.79 -2.39 -0.02 1.10 16 40 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.42 4.48 8.46 -92.71 -0.78 3.70 16 42 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 0.80 8.04 -2.39 -0.02 0.78 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 1.22 7.45 -2.39 -0.02 1.20 16 Total: -1.00 -81.39 391.99 -1.18 -82.57 By element: Atomic # 1 Polarization: 42.54 SS G_CDS: -1.14 Total: 41.40 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.19 Total: 7.36 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -7.04 Total: -120.44 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -0.10 Total: -50.81 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.90 Total: 39.91 kcal Total: -81.39 -1.18 -82.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668989425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.538 kcal (2) G-P(sol) polarization free energy of solvation -81.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds