Wall clock time and date at job start Fri Apr 10 2020 18:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.29213 * 2 1 4 4 C 1.52924 * 109.30051 * 240.42195 * 2 1 3 5 5 C 1.53351 * 108.67184 * 290.64482 * 4 2 1 6 6 H 1.08998 * 109.67619 * 52.23898 * 5 4 2 7 7 C 1.50703 * 109.67210 * 172.73508 * 5 4 2 8 8 O 1.21285 * 119.99964 * 25.26065 * 7 5 4 9 9 N 1.34773 * 119.99669 * 205.25964 * 7 5 4 10 10 C 1.47161 * 120.70672 * 184.08902 * 9 7 5 11 11 C 1.53888 * 108.03245 * 132.75781 * 10 9 7 12 12 H 1.08990 * 112.58028 * 182.22080 * 11 10 9 13 13 C 1.54134 * 107.70541 * 306.32668 * 11 10 9 14 14 C 1.54277 * 104.88948 * 89.41120 * 13 11 10 15 15 C 1.54546 * 104.85175 * 359.80204 * 14 13 11 16 16 H 1.09000 * 112.18040 * 146.40811 * 15 14 13 17 17 C 1.47971 * 120.64633 * 3.79594 * 9 7 5 18 18 N 1.48307 * 107.20686 * 58.36022 * 11 10 9 19 19 C 1.36931 * 128.07520 * 106.70333 * 18 11 10 20 20 H 1.08007 * 119.99886 * 155.39662 * 19 18 11 21 21 C 1.38810 * 120.00384 * 335.40289 * 19 18 11 22 22 N 1.31619 * 119.99791 * 354.78067 * 21 19 18 23 23 Si 1.86799 * 120.00175 * 174.78628 * 21 19 18 24 24 H 1.48503 * 109.46998 * 269.99537 * 23 21 19 25 25 H 1.48498 * 109.47515 * 29.99513 * 23 21 19 26 26 H 1.48494 * 109.47126 * 149.99928 * 23 21 19 27 27 C 1.53066 * 108.42266 * 292.46957 * 5 4 2 28 28 C 1.50176 * 109.88838 * 48.91750 * 27 5 4 29 29 O 1.21283 * 118.24611 * 162.38159 * 28 27 5 30 30 N 1.33349 * 123.51047 * 342.37722 * 28 27 5 31 31 H 1.09005 * 109.46669 * 179.58258 * 1 2 3 32 32 H 1.09005 * 109.47016 * 299.57765 * 1 2 3 33 33 H 1.08998 * 109.47413 * 59.57997 * 1 2 3 34 34 H 1.08997 * 109.60112 * 170.88454 * 4 2 1 35 35 H 1.09003 * 109.73781 * 50.48052 * 4 2 1 36 36 H 1.09002 * 109.75375 * 13.11947 * 10 9 7 37 37 H 1.09009 * 109.79391 * 252.41621 * 10 9 7 38 38 H 1.08992 * 110.50768 * 330.46687 * 13 11 10 39 39 H 1.09006 * 110.27381 * 208.22809 * 13 11 10 40 40 H 1.09001 * 110.36199 * 240.96086 * 14 13 11 41 41 H 1.09000 * 110.36565 * 118.64689 * 14 13 11 42 42 H 1.08997 * 109.69654 * 107.66915 * 17 9 7 43 43 H 1.09007 * 109.93283 * 346.85868 * 17 9 7 44 44 H 0.96999 * 120.00324 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.40071 * 169.03524 * 27 5 4 46 46 H 1.09004 * 109.39907 * 288.76930 * 27 5 4 47 47 H 0.96998 * 117.94881 * 182.24194 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8901 1.0288 0.0000 4 6 2.0354 -0.7124 -1.2552 5 6 1.7143 -2.2071 -1.1344 6 1 0.6570 -2.3378 -0.9036 7 6 2.0403 -2.9025 -2.4310 8 8 2.8727 -2.4334 -3.1781 9 7 1.4068 -4.0456 -2.7603 10 6 1.7756 -4.7851 -3.9780 11 6 1.9276 -6.2705 -3.6056 12 1 2.2393 -6.8840 -4.4507 13 6 2.9176 -6.3594 -2.4276 14 6 2.0411 -6.2420 -1.1634 15 6 0.5981 -6.0872 -1.6948 16 1 -0.1346 -6.5570 -1.0387 17 6 0.3304 -4.5859 -1.9008 18 7 0.6317 -6.7153 -3.0380 19 6 -0.3112 -7.5223 -3.6167 20 1 -0.9940 -8.0850 -2.9973 21 6 -0.3894 -7.6173 -4.9993 22 7 0.3724 -6.8554 -5.7554 23 14 -1.5757 -8.8263 -5.7869 24 1 -0.8945 -10.1310 -5.9843 25 1 -2.7537 -9.0119 -4.9018 26 1 -2.0221 -8.2972 -7.1006 27 6 2.5653 -2.7950 -0.0060 28 6 2.4539 -1.9343 1.2195 29 8 2.7876 -2.4072 2.2853 30 7 2.0078 -0.6778 1.1986 31 1 -0.3633 -1.0277 -0.0075 32 1 -0.3633 0.5073 0.8938 33 1 -0.3634 0.5203 -0.8862 34 1 3.1132 -0.5759 -1.3442 35 1 1.5409 -0.3021 -2.1357 36 1 2.7196 -4.4047 -4.3684 37 1 0.9941 -4.6719 -4.7295 38 1 3.6352 -5.5401 -2.4691 39 1 3.4363 -7.3181 -2.4417 40 1 2.3277 -5.3648 -0.5833 41 1 2.1273 -7.1436 -0.5570 42 1 -0.6341 -4.4474 -2.3893 43 1 0.3326 -4.0758 -0.9375 44 1 0.3176 -6.9215 -6.7216 45 1 2.2150 -3.8010 0.2251 46 1 3.6070 -2.8399 -0.3239 47 1 2.0005 -0.1840 2.0335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029374141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:43 Heat of formation + Delta-G solvation = -39.338642 kcal Electronic energy + Delta-G solvation = -29505.459396 eV Core-core repulsion = 25688.670524 eV Total energy + Delta-G solvation = -3816.788872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.97921 -39.72409 -38.01803 -36.79346 -33.89841 -33.18662 -32.41155 -31.18486 -30.57559 -29.30352 -27.36953 -26.51347 -24.84394 -23.87809 -23.20591 -22.54678 -19.92562 -19.64058 -19.01979 -18.60011 -17.33289 -17.10381 -16.54113 -16.21872 -15.52884 -15.09207 -14.93310 -14.73481 -14.50860 -14.23265 -13.78189 -13.69046 -13.52413 -13.22684 -13.01234 -12.81458 -12.62600 -12.34948 -11.92065 -11.85932 -11.70686 -11.65008 -11.53171 -11.11395 -11.00862 -10.95030 -10.86591 -10.78136 -10.36740 -10.14961 -10.03296 -9.88344 -9.84366 -9.58559 -9.32191 -9.15697 -8.73099 -8.10376 -6.78915 -5.92073 -3.31877 2.50982 2.94852 3.11167 3.31798 3.38000 3.39385 3.48550 4.30648 4.36073 4.44275 4.50192 4.65752 4.87966 4.94279 5.04253 5.10714 5.18246 5.27410 5.39789 5.48761 5.54022 5.55776 5.64555 5.67156 5.71807 5.74188 5.79976 5.87022 5.92412 6.05293 6.21601 6.31216 6.38130 6.50984 6.59182 6.60695 6.67335 6.77590 6.82314 6.95877 7.14997 7.29366 7.45945 7.65922 8.03578 8.06667 8.10720 8.63232 8.99856 9.61258 10.42141 11.22081 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021201 B = 0.003838 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.370562 B = 7293.296704 C = 7510.244667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 H 0.089 0.911 4 C -0.111 4.111 5 C -0.113 4.113 6 H 0.100 0.900 7 C 0.511 3.489 8 O -0.556 6.556 9 N -0.587 5.587 10 C 0.111 3.889 11 C 0.172 3.828 12 H 0.104 0.896 13 C -0.137 4.137 14 C -0.127 4.127 15 C 0.132 3.868 16 H 0.079 0.921 17 C 0.093 3.907 18 N -0.581 5.581 19 C -0.234 4.234 20 H 0.073 0.927 21 C 0.006 3.994 22 N -0.907 5.907 23 Si 0.911 3.089 24 H -0.288 1.288 25 H -0.280 1.280 26 H -0.290 1.290 27 C -0.126 4.126 28 C 0.527 3.473 29 O -0.557 6.557 30 N -0.716 5.716 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.256 0.744 45 H 0.110 0.890 46 H 0.106 0.894 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.947 12.347 10.169 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.031 3.969 3 H 0.107 0.893 4 C -0.149 4.149 5 C -0.135 4.135 6 H 0.118 0.882 7 C 0.298 3.702 8 O -0.436 6.436 9 N -0.318 5.318 10 C -0.011 4.011 11 C 0.065 3.935 12 H 0.122 0.878 13 C -0.176 4.176 14 C -0.166 4.166 15 C 0.024 3.976 16 H 0.097 0.903 17 C -0.032 4.032 18 N -0.302 5.302 19 C -0.362 4.362 20 H 0.090 0.910 21 C -0.193 4.193 22 N -0.552 5.552 23 Si 0.741 3.259 24 H -0.215 1.215 25 H -0.205 1.205 26 H -0.216 1.216 27 C -0.166 4.166 28 C 0.315 3.685 29 O -0.435 6.435 30 N -0.368 5.368 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.433 12.081 9.822 15.636 hybrid contribution -0.788 -0.333 -0.257 0.893 sum 0.645 11.749 9.565 15.164 Atomic orbital electron populations 1.22355 0.94914 1.03072 1.02636 1.21018 0.94484 0.96568 0.84795 0.89284 1.21745 1.03271 0.93008 0.96926 1.21479 1.01935 0.96024 0.94052 0.88209 1.20176 0.81791 0.81138 0.87099 1.90654 1.34871 1.65365 1.52714 1.48433 1.35426 1.22475 1.25466 1.22486 1.00821 0.92817 0.85024 1.21592 0.84977 0.92221 0.94705 0.87812 1.22570 0.98042 1.00007 0.96965 1.22582 0.96658 1.00024 0.97332 1.21978 0.95254 0.90239 0.90169 0.90291 1.22725 0.90363 0.97239 0.92896 1.45065 1.17143 1.55147 1.12866 1.18928 1.10326 1.17676 0.89278 0.90952 1.25022 0.98996 0.98917 0.96364 1.69848 1.41298 1.39877 1.04157 0.86159 0.80593 0.80458 0.78707 1.21480 1.20542 1.21642 1.21702 1.03185 1.00097 0.91652 1.20056 0.75877 0.81875 0.90728 1.90766 1.49791 1.71686 1.31299 1.45591 1.65199 1.13840 1.12162 0.91820 0.92123 0.91003 0.89873 0.89189 0.91577 0.89406 0.92876 0.92829 0.92761 0.92509 0.91357 0.91724 0.93396 0.87168 0.87549 0.76720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.30 37.16 0.35 -0.82 16 2 C 0.14 1.02 3.83 -68.37 -0.26 0.76 16 3 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.11 -1.12 4.17 -26.59 -0.11 -1.23 16 5 C -0.11 -1.37 1.69 -91.55 -0.15 -1.52 16 6 H 0.10 1.10 4.64 -51.93 -0.24 0.86 16 7 C 0.51 8.43 6.79 -10.99 -0.07 8.36 16 8 O -0.56 -10.91 15.75 5.55 0.09 -10.82 16 9 N -0.59 -10.48 2.28 -170.87 -0.39 -10.87 16 10 C 0.11 2.36 5.72 -3.22 -0.02 2.34 16 11 C 0.17 3.77 3.06 -65.88 -0.20 3.57 16 12 H 0.10 2.59 6.93 -51.93 -0.36 2.23 16 13 C -0.14 -2.54 6.16 -25.47 -0.16 -2.70 16 14 C -0.13 -2.13 6.19 -25.25 -0.16 -2.29 16 15 C 0.13 2.42 4.32 -65.66 -0.28 2.14 16 16 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 17 C 0.09 1.52 5.68 -2.78 -0.02 1.51 16 18 N -0.58 -13.24 2.78 -152.84 -0.42 -13.66 16 19 C -0.23 -5.93 10.34 -15.06 -0.16 -6.09 16 20 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 21 C 0.01 0.15 5.43 -17.43 -0.09 0.05 16 22 N -0.91 -24.29 10.18 55.49 0.57 -23.72 16 23 Si 0.91 20.71 29.56 -169.99 -5.02 15.68 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 27 C -0.13 -1.54 5.20 -28.10 -0.15 -1.69 16 28 C 0.53 6.56 7.71 -11.87 -0.09 6.47 16 29 O -0.56 -9.03 17.78 5.56 0.10 -8.93 16 30 N -0.72 -6.55 5.02 -54.85 -0.28 -6.83 16 31 H 0.06 0.51 6.50 -51.93 -0.34 0.17 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.07 1.42 7.15 -51.93 -0.37 1.05 16 37 H 0.09 2.15 7.22 -51.92 -0.37 1.78 16 38 H 0.05 0.97 7.83 -51.93 -0.41 0.56 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.81 5.40 -51.93 -0.28 0.53 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.06 0.85 5.21 -51.92 -0.27 0.58 16 44 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 45 H 0.11 1.38 5.29 -51.93 -0.27 1.11 16 46 H 0.11 1.35 8.09 -51.93 -0.42 0.93 16 47 H 0.40 3.12 8.80 -40.82 -0.36 2.76 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -30.51 352.67 -8.67 -39.18 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.04 Total: 5.80 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -1.58 Total: 8.85 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.52 Total: -55.08 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: 0.19 Total: -19.75 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.51 -8.67 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029374141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.158 kcal (2) G-P(sol) polarization free energy of solvation -30.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds