Wall clock time and date at job start Fri Apr 10 2020 18:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.29213 * 2 1 4 4 C 1.52924 * 109.30051 * 240.42195 * 2 1 3 5 5 C 1.53351 * 108.67184 * 290.64482 * 4 2 1 6 6 H 1.08998 * 109.67619 * 52.23898 * 5 4 2 7 7 C 1.50703 * 109.67210 * 172.73508 * 5 4 2 8 8 O 1.21285 * 119.99964 * 25.26065 * 7 5 4 9 9 N 1.34773 * 119.99669 * 205.25964 * 7 5 4 10 10 C 1.47161 * 120.70672 * 184.08902 * 9 7 5 11 11 C 1.53888 * 108.03245 * 132.75781 * 10 9 7 12 12 H 1.08990 * 112.58028 * 182.22080 * 11 10 9 13 13 C 1.54134 * 107.70541 * 306.32668 * 11 10 9 14 14 C 1.54277 * 104.88948 * 89.41120 * 13 11 10 15 15 C 1.54546 * 104.85175 * 359.80204 * 14 13 11 16 16 H 1.09000 * 112.18040 * 146.40811 * 15 14 13 17 17 C 1.47971 * 120.64633 * 3.79594 * 9 7 5 18 18 N 1.48307 * 107.20686 * 58.36022 * 11 10 9 19 19 C 1.36931 * 128.07520 * 106.70333 * 18 11 10 20 20 H 1.08007 * 119.99886 * 155.39662 * 19 18 11 21 21 C 1.38810 * 120.00384 * 335.40289 * 19 18 11 22 22 N 1.31619 * 119.99791 * 354.78067 * 21 19 18 23 23 Si 1.86799 * 120.00175 * 174.78628 * 21 19 18 24 24 H 1.48503 * 109.46998 * 269.99537 * 23 21 19 25 25 H 1.48498 * 109.47515 * 29.99513 * 23 21 19 26 26 H 1.48494 * 109.47126 * 149.99928 * 23 21 19 27 27 C 1.53066 * 108.42266 * 292.46957 * 5 4 2 28 28 C 1.50176 * 109.88838 * 48.91750 * 27 5 4 29 29 O 1.21283 * 118.24611 * 162.38159 * 28 27 5 30 30 N 1.33349 * 123.51047 * 342.37722 * 28 27 5 31 31 H 1.09005 * 109.46669 * 179.58258 * 1 2 3 32 32 H 1.09005 * 109.47016 * 299.57765 * 1 2 3 33 33 H 1.08998 * 109.47413 * 59.57997 * 1 2 3 34 34 H 1.08997 * 109.60112 * 170.88454 * 4 2 1 35 35 H 1.09003 * 109.73781 * 50.48052 * 4 2 1 36 36 H 1.09002 * 109.75375 * 13.11947 * 10 9 7 37 37 H 1.09009 * 109.79391 * 252.41621 * 10 9 7 38 38 H 1.08992 * 110.50768 * 330.46687 * 13 11 10 39 39 H 1.09006 * 110.27381 * 208.22809 * 13 11 10 40 40 H 1.09001 * 110.36199 * 240.96086 * 14 13 11 41 41 H 1.09000 * 110.36565 * 118.64689 * 14 13 11 42 42 H 1.08997 * 109.69654 * 107.66915 * 17 9 7 43 43 H 1.09007 * 109.93283 * 346.85868 * 17 9 7 44 44 H 0.96999 * 120.00324 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.40071 * 169.03524 * 27 5 4 46 46 H 1.09004 * 109.39907 * 288.76930 * 27 5 4 47 47 H 0.96998 * 117.94881 * 182.24194 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8901 1.0288 0.0000 4 6 2.0354 -0.7124 -1.2552 5 6 1.7143 -2.2071 -1.1344 6 1 0.6570 -2.3378 -0.9036 7 6 2.0403 -2.9025 -2.4310 8 8 2.8727 -2.4334 -3.1781 9 7 1.4068 -4.0456 -2.7603 10 6 1.7756 -4.7851 -3.9780 11 6 1.9276 -6.2705 -3.6056 12 1 2.2393 -6.8840 -4.4507 13 6 2.9176 -6.3594 -2.4276 14 6 2.0411 -6.2420 -1.1634 15 6 0.5981 -6.0872 -1.6948 16 1 -0.1346 -6.5570 -1.0387 17 6 0.3304 -4.5859 -1.9008 18 7 0.6317 -6.7153 -3.0380 19 6 -0.3112 -7.5223 -3.6167 20 1 -0.9940 -8.0850 -2.9973 21 6 -0.3894 -7.6173 -4.9993 22 7 0.3724 -6.8554 -5.7554 23 14 -1.5757 -8.8263 -5.7869 24 1 -0.8945 -10.1310 -5.9843 25 1 -2.7537 -9.0119 -4.9018 26 1 -2.0221 -8.2972 -7.1006 27 6 2.5653 -2.7950 -0.0060 28 6 2.4539 -1.9343 1.2195 29 8 2.7876 -2.4072 2.2853 30 7 2.0078 -0.6778 1.1986 31 1 -0.3633 -1.0277 -0.0075 32 1 -0.3633 0.5073 0.8938 33 1 -0.3634 0.5203 -0.8862 34 1 3.1132 -0.5759 -1.3442 35 1 1.5409 -0.3021 -2.1357 36 1 2.7196 -4.4047 -4.3684 37 1 0.9941 -4.6719 -4.7295 38 1 3.6352 -5.5401 -2.4691 39 1 3.4363 -7.3181 -2.4417 40 1 2.3277 -5.3648 -0.5833 41 1 2.1273 -7.1436 -0.5570 42 1 -0.6341 -4.4474 -2.3893 43 1 0.3326 -4.0758 -0.9375 44 1 0.3176 -6.9215 -6.7216 45 1 2.2150 -3.8010 0.2251 46 1 3.6070 -2.8399 -0.3239 47 1 2.0005 -0.1840 2.0335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029374141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:42 Heat of formation + Delta-G solvation = -59.042902 kcal Electronic energy + Delta-G solvation = -29506.313837 eV Core-core repulsion = 25688.670524 eV Total energy + Delta-G solvation = -3817.643313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10869 -40.99868 -39.43163 -37.77648 -35.43788 -34.36847 -34.07994 -32.17679 -31.92905 -31.03678 -28.19724 -27.97422 -26.19101 -25.50008 -24.57156 -23.41378 -21.37550 -21.21575 -20.20258 -19.82157 -18.70381 -18.08489 -17.83464 -17.47202 -16.81108 -16.61016 -16.35394 -16.07915 -15.70191 -15.42988 -15.03687 -14.75649 -14.68692 -14.59115 -14.45269 -14.31555 -13.63977 -13.48742 -13.33411 -13.22971 -12.99298 -12.85186 -12.70870 -12.68707 -12.56846 -12.34085 -11.99550 -11.89819 -11.84321 -11.74985 -11.60769 -11.43728 -11.17137 -11.10880 -10.68053 -10.45257 -10.10594 -9.69996 -8.59556 -7.87627 -5.27372 1.48975 1.50567 1.53798 1.58158 1.66309 2.09393 2.30031 2.51056 3.29768 3.34412 3.49824 3.59872 3.64061 3.69968 4.01341 4.07000 4.10664 4.15455 4.23819 4.24027 4.33972 4.38525 4.45391 4.56148 4.65417 4.68166 4.81517 4.87022 4.92153 4.95928 4.99865 5.03461 5.09528 5.13352 5.16289 5.20179 5.26523 5.42739 5.43065 5.56319 5.61064 5.83679 5.86800 6.25313 6.31069 6.63047 7.06529 7.19412 7.24109 7.72065 8.55169 9.25332 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021201 B = 0.003838 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.370562 B = 7293.296704 C = 7510.244667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.142 3.858 3 H 0.120 0.880 4 C -0.111 4.111 5 C -0.101 4.101 6 H 0.118 0.882 7 C 0.512 3.488 8 O -0.588 6.588 9 N -0.591 5.591 10 C 0.128 3.872 11 C 0.171 3.829 12 H 0.063 0.937 13 C -0.128 4.128 14 C -0.117 4.117 15 C 0.126 3.874 16 H 0.093 0.907 17 C 0.100 3.900 18 N -0.601 5.601 19 C -0.238 4.238 20 H 0.076 0.924 21 C -0.046 4.046 22 N -0.932 5.932 23 Si 0.969 3.031 24 H -0.291 1.291 25 H -0.269 1.269 26 H -0.299 1.299 27 C -0.123 4.123 28 C 0.531 3.469 29 O -0.598 6.598 30 N -0.702 5.702 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.108 0.892 44 H 0.247 0.753 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 13.913 12.758 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.038 3.962 3 H 0.137 0.863 4 C -0.149 4.149 5 C -0.122 4.122 6 H 0.136 0.864 7 C 0.301 3.699 8 O -0.470 6.470 9 N -0.322 5.322 10 C 0.003 3.997 11 C 0.063 3.937 12 H 0.081 0.919 13 C -0.167 4.167 14 C -0.155 4.155 15 C 0.018 3.982 16 H 0.111 0.889 17 C -0.024 4.024 18 N -0.323 5.323 19 C -0.367 4.367 20 H 0.094 0.906 21 C -0.241 4.241 22 N -0.578 5.578 23 Si 0.798 3.202 24 H -0.219 1.219 25 H -0.193 1.193 26 H -0.226 1.226 27 C -0.163 4.163 28 C 0.318 3.682 29 O -0.480 6.480 30 N -0.352 5.352 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.126 0.874 44 H 0.056 0.944 45 H 0.129 0.871 46 H 0.119 0.881 47 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.549 13.693 12.451 18.515 hybrid contribution -0.491 -0.761 -1.080 1.410 sum 0.058 12.932 11.371 17.220 Atomic orbital electron populations 1.22357 0.93834 1.02823 1.03886 1.21146 0.95153 0.97270 0.82607 0.86265 1.21774 1.02939 0.91651 0.98578 1.21462 1.02887 0.96837 0.91046 0.86419 1.20935 0.80586 0.80208 0.88154 1.90643 1.36163 1.65965 1.54180 1.48422 1.36166 1.22944 1.24622 1.21946 0.98731 0.93152 0.85823 1.21420 0.85861 0.91714 0.94662 0.91931 1.22447 0.97545 1.00180 0.96550 1.22530 0.94845 1.01736 0.96402 1.22245 0.96721 0.91078 0.88109 0.88860 1.22702 0.89076 0.96393 0.94250 1.45231 1.17067 1.55571 1.14456 1.19223 1.10218 1.17673 0.89559 0.90601 1.25680 1.00717 1.00697 0.97052 1.70032 1.42817 1.41430 1.03566 0.85244 0.79182 0.78310 0.77481 1.21860 1.19350 1.22596 1.21636 1.02851 1.00268 0.91501 1.19957 0.75733 0.82633 0.89863 1.90759 1.51984 1.72784 1.32480 1.45541 1.63587 1.12816 1.13296 0.92791 0.90738 0.90015 0.90795 0.88974 0.92762 0.93362 0.92540 0.92799 0.90403 0.91366 0.92790 0.87380 0.94370 0.87113 0.88127 0.75543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 9.30 71.98 0.67 -0.95 16 2 C 0.14 1.57 3.83 45.11 0.17 1.74 16 3 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.11 -1.92 4.17 30.69 0.13 -1.79 16 5 C -0.10 -2.16 1.69 -11.40 -0.02 -2.18 16 6 H 0.12 2.14 4.64 -2.39 -0.01 2.13 16 7 C 0.51 16.28 6.79 87.66 0.60 16.87 16 8 O -0.59 -22.91 15.75 -3.04 -0.05 -22.96 16 9 N -0.59 -20.75 2.28 -812.90 -1.85 -22.60 16 10 C 0.13 5.64 5.72 86.55 0.50 6.13 16 11 C 0.17 7.72 3.06 45.33 0.14 7.85 16 12 H 0.06 3.32 6.93 -2.39 -0.02 3.30 16 13 C -0.13 -4.72 6.16 31.41 0.19 -4.52 16 14 C -0.12 -3.64 6.19 31.55 0.20 -3.44 16 15 C 0.13 4.38 4.32 45.47 0.20 4.58 16 16 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 17 C 0.10 3.08 5.68 86.39 0.49 3.57 16 18 N -0.60 -27.57 2.78 -637.47 -1.77 -29.34 16 19 C -0.24 -12.17 10.34 84.03 0.87 -11.30 16 20 H 0.08 3.75 7.83 -2.91 -0.02 3.73 16 21 C -0.05 -2.43 5.43 84.86 0.46 -1.97 16 22 N -0.93 -52.26 10.18 21.65 0.22 -52.04 16 23 Si 0.97 43.45 29.56 68.60 2.03 45.47 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 27 C -0.12 -2.66 5.20 29.71 0.15 -2.51 16 28 C 0.53 11.72 7.71 87.71 0.68 12.40 16 29 O -0.60 -18.13 17.78 -3.04 -0.05 -18.19 16 30 N -0.70 -10.35 5.02 -446.64 -2.24 -12.59 16 31 H 0.05 0.64 6.50 -2.38 -0.02 0.62 16 32 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 35 H 0.09 1.61 8.12 -2.39 -0.02 1.59 16 36 H 0.05 2.46 7.15 -2.39 -0.02 2.45 16 37 H 0.05 2.50 7.22 -2.38 -0.02 2.48 16 38 H 0.06 2.03 7.83 -2.39 -0.02 2.01 16 39 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.08 2.08 5.40 -2.39 -0.01 2.06 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.11 2.41 5.21 -2.38 -0.01 2.40 16 44 H 0.25 13.74 8.31 -92.71 -0.77 12.96 16 45 H 0.11 2.40 5.29 -2.39 -0.01 2.39 16 46 H 0.10 2.36 8.09 -2.38 -0.02 2.34 16 47 H 0.41 4.91 8.80 -92.71 -0.82 4.10 16 Total: -1.00 -69.16 352.67 1.88 -67.28 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.18 Total: 20.49 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 5.42 Total: 24.48 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -5.64 Total: -116.57 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.10 Total: -41.14 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.16 1.88 -67.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029374141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.240 kcal (2) G-P(sol) polarization free energy of solvation -69.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds