Wall clock time and date at job start Fri Apr 10 2020 18:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.33353 * 117.94951 * 2 1 4 4 O 1.21287 * 118.24424 * 357.73311 * 3 2 1 5 5 C 1.50170 * 123.51508 * 177.75641 * 3 2 1 6 6 C 1.53073 * 109.88969 * 17.58028 * 5 3 2 7 7 C 1.53344 * 108.42672 * 311.10212 * 6 5 3 8 8 C 1.45754 * 117.95066 * 179.97438 * 2 1 3 9 9 H 1.09001 * 109.30270 * 78.98845 * 8 2 1 10 10 C 1.50708 * 109.29685 * 319.40745 * 8 2 1 11 11 O 1.21277 * 119.99836 * 339.99936 * 10 8 2 12 12 N 1.34775 * 119.99485 * 160.00183 * 10 8 2 13 13 C 1.47162 * 120.71579 * 359.97438 * 12 10 8 14 14 C 1.55886 * 107.94965 * 132.45472 * 13 12 10 15 15 H 1.09000 * 112.45425 * 181.84303 * 14 13 12 16 16 C 1.54542 * 108.44394 * 307.13427 * 14 13 12 17 17 C 1.53734 * 104.95434 * 88.28879 * 16 14 13 18 18 C 1.54548 * 104.95405 * 359.97438 * 17 16 14 19 19 H 1.08994 * 112.18075 * 146.28519 * 18 17 16 20 20 C 1.47169 * 120.70556 * 180.02562 * 12 10 8 21 21 N 1.48312 * 104.35730 * 24.57736 * 18 17 16 22 22 C 1.36931 * 128.07653 * 139.08244 * 21 18 17 23 23 H 1.08002 * 119.99690 * 26.59016 * 22 21 18 24 24 C 1.38807 * 120.00240 * 206.58103 * 22 21 18 25 25 N 1.31620 * 120.00424 * 196.08287 * 24 22 21 26 26 Si 1.86799 * 119.99929 * 16.08473 * 24 22 21 27 27 H 1.48500 * 109.47182 * 268.86047 * 26 24 22 28 28 H 1.48504 * 109.46957 * 28.85544 * 26 24 22 29 29 H 1.48501 * 109.47633 * 148.85745 * 26 24 22 30 30 H 1.09001 * 109.47209 * 270.01521 * 1 2 3 31 31 H 1.09004 * 109.47796 * 30.01959 * 1 2 3 32 32 H 1.08998 * 109.47284 * 150.02316 * 1 2 3 33 33 H 1.09003 * 109.40542 * 137.70805 * 5 3 2 34 34 H 1.09000 * 109.40401 * 257.53881 * 5 3 2 35 35 H 1.08999 * 109.67282 * 70.83517 * 6 5 3 36 36 H 1.09003 * 109.67684 * 191.32965 * 6 5 3 37 37 H 1.08999 * 109.60257 * 307.77479 * 7 6 5 38 38 H 1.08997 * 109.60612 * 187.28711 * 7 6 5 39 39 H 1.08999 * 109.74893 * 252.41367 * 13 12 10 40 40 H 1.09002 * 109.74569 * 13.09521 * 13 12 10 41 41 H 1.09000 * 110.36192 * 207.00416 * 16 14 13 42 42 H 1.08993 * 110.36384 * 329.32054 * 16 14 13 43 43 H 1.08997 * 110.42000 * 241.06594 * 17 16 14 44 44 H 1.09002 * 110.20766 * 118.81833 * 17 16 14 45 45 H 1.08997 * 109.75004 * 107.57997 * 20 12 10 46 46 H 1.08997 * 109.78969 * 346.87373 * 20 12 10 47 47 H 0.97002 * 120.00156 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.0899 1.1780 0.0000 4 8 1.4158 2.1854 -0.0423 5 6 3.5837 1.3241 0.0490 6 6 4.2493 0.0013 -0.3388 7 6 3.5947 -1.1258 0.4690 8 6 2.1481 -1.2875 0.0006 9 1 2.1434 -1.6984 -1.0090 10 6 1.4274 -2.2333 0.9265 11 8 0.6885 -1.7973 1.7837 12 7 1.6041 -3.5636 0.8019 13 6 2.4966 -4.1096 -0.2330 14 6 3.4197 -5.1705 0.4397 15 1 4.1366 -5.6015 -0.2591 16 6 4.0995 -4.5201 1.6657 17 6 3.1236 -4.7532 2.8305 18 6 1.9372 -5.5241 2.2087 19 1 1.4964 -6.2346 2.9078 20 6 0.9078 -4.5013 1.6973 21 7 2.5170 -6.1942 1.0194 22 6 2.2791 -7.4642 0.5659 23 1 1.3402 -7.9497 0.7876 24 6 3.2446 -8.1275 -0.1788 25 7 2.9191 -9.1948 -0.8769 26 14 5.0059 -7.5055 -0.1902 27 1 5.1864 -6.5506 -1.3130 28 1 5.2970 -6.8196 1.0944 29 1 5.9347 -8.6515 -0.3609 30 1 -0.3634 0.0003 1.0277 31 1 -0.3635 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 3.8944 2.1034 -0.6469 34 1 3.8878 1.5985 1.0591 35 1 4.1091 -0.1815 -1.4041 36 1 5.3144 0.0458 -0.1112 37 1 3.6095 -0.8723 1.5290 38 1 4.1383 -2.0563 0.3055 39 1 1.9049 -4.5749 -1.0214 40 1 3.1059 -3.3095 -0.6533 41 1 5.0540 -5.0045 1.8715 42 1 4.2432 -3.4528 1.4978 43 1 2.7846 -3.8012 3.2390 44 1 3.6002 -5.3518 3.6068 45 1 0.1178 -5.0154 1.1499 46 1 0.4788 -3.9580 2.5392 47 1 3.5938 -9.6581 -1.3976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029569586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:24:58 Heat of formation + Delta-G solvation = -35.533847 kcal Electronic energy + Delta-G solvation = -29753.226552 eV Core-core repulsion = 25936.602668 eV Total energy + Delta-G solvation = -3816.623884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.34828 -41.16205 -39.54863 -37.35627 -35.70361 -34.92434 -34.35401 -32.69332 -31.75143 -30.96730 -28.28663 -27.88255 -26.42148 -25.48489 -25.03230 -23.30381 -22.04202 -21.48054 -20.31565 -19.67302 -18.94679 -18.13327 -17.72264 -17.62763 -17.54814 -16.72372 -16.55975 -16.01414 -15.57336 -15.30697 -15.26160 -15.09210 -14.80838 -14.73806 -14.50995 -14.35859 -14.06357 -13.66365 -13.59468 -13.44693 -13.09960 -13.05094 -12.91368 -12.77080 -12.58651 -12.49217 -12.20696 -11.95328 -11.89017 -11.83423 -11.50991 -11.42060 -11.22975 -11.14584 -10.72877 -10.65405 -9.94226 -9.70697 -8.88904 -8.12896 -5.47659 1.30453 1.40925 1.47067 1.48390 1.56348 1.78933 2.11388 2.45244 3.04951 3.19501 3.26635 3.48497 3.61009 3.79291 3.82042 3.90834 3.98353 4.06302 4.10246 4.17186 4.24219 4.29907 4.42112 4.50047 4.54183 4.57127 4.67265 4.73478 4.73656 4.77599 4.86187 4.87845 4.90270 4.97213 4.99922 5.03452 5.10058 5.23233 5.25883 5.29820 5.36987 5.50245 5.74702 6.15683 6.30621 6.43509 6.73407 7.00050 7.10365 7.51962 8.19838 9.07490 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020893 B = 0.004302 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.864010 B = 6507.102798 C = 7011.300258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.588 5.588 3 C 0.510 3.490 4 O -0.601 6.601 5 C -0.129 4.129 6 C -0.112 4.112 7 C -0.133 4.133 8 C 0.126 3.874 9 H 0.119 0.881 10 C 0.505 3.495 11 O -0.569 6.569 12 N -0.584 5.584 13 C 0.096 3.904 14 C 0.111 3.889 15 H 0.072 0.928 16 C -0.126 4.126 17 C -0.116 4.116 18 C 0.132 3.868 19 H 0.079 0.921 20 C 0.113 3.887 21 N -0.615 5.615 22 C -0.224 4.224 23 H 0.050 0.950 24 C -0.036 4.036 25 N -0.964 5.964 26 Si 0.945 3.055 27 H -0.263 1.263 28 H -0.240 1.240 29 H -0.321 1.321 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.117 0.883 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.087 0.913 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 18.199 1.324 19.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.319 5.319 3 C 0.301 3.699 4 O -0.483 6.483 5 C -0.169 4.169 6 C -0.150 4.150 7 C -0.171 4.171 8 C 0.019 3.981 9 H 0.136 0.864 10 C 0.293 3.707 11 O -0.449 6.449 12 N -0.316 5.316 13 C -0.029 4.029 14 C 0.005 3.995 15 H 0.090 0.910 16 C -0.165 4.165 17 C -0.155 4.155 18 C 0.025 3.975 19 H 0.097 0.903 20 C -0.011 4.011 21 N -0.338 5.338 22 C -0.353 4.353 23 H 0.068 0.932 24 C -0.231 4.231 25 N -0.610 5.610 26 Si 0.774 3.226 27 H -0.190 1.190 28 H -0.164 1.164 29 H -0.251 1.251 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.133 0.867 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.106 0.894 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.829 18.670 1.626 19.626 hybrid contribution -0.061 -0.928 -0.152 0.942 sum 5.768 17.742 1.474 18.714 Atomic orbital electron populations 1.21608 0.79884 1.02253 1.01953 1.47045 1.07564 1.05413 1.71885 1.21036 0.92807 0.81563 0.74494 1.90687 1.68016 1.36813 1.52767 1.21749 0.87482 1.01513 1.06129 1.21696 1.01711 0.90655 1.00903 1.22128 0.90348 1.02810 1.01800 1.21198 0.94233 0.82460 1.00177 0.86402 1.21047 0.81985 0.82624 0.85044 1.90684 1.39996 1.76886 1.37284 1.48005 1.45025 1.04740 1.33842 1.22931 0.92668 0.97773 0.89496 1.22826 0.92188 0.88855 0.95616 0.91045 1.22575 0.98264 1.01325 0.94311 1.22295 0.95947 0.99782 0.97506 1.22171 0.93902 0.92633 0.88816 0.90286 1.22110 0.94619 0.90656 0.93753 1.45482 1.51504 1.09869 1.26954 1.18425 0.98537 0.89462 1.28844 0.93236 1.25848 1.01984 0.96310 0.98921 1.69928 1.34972 1.23424 1.32678 0.85897 0.80435 0.76176 0.80074 1.18975 1.16379 1.25110 0.92998 0.91134 0.91265 0.86642 0.87056 0.89548 0.86724 0.90431 0.86886 0.92111 0.86545 0.91769 0.88542 0.90765 0.91845 0.93196 0.89434 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.25 8.69 127.77 1.11 3.36 16 2 N -0.59 -13.85 2.96 -831.55 -2.46 -16.31 16 3 C 0.51 12.22 7.47 87.71 0.66 12.87 16 4 O -0.60 -19.51 16.18 -3.05 -0.05 -19.56 16 5 C -0.13 -1.74 6.03 29.71 0.18 -1.56 16 6 C -0.11 -0.95 6.03 30.73 0.19 -0.76 16 7 C -0.13 -1.71 4.75 30.68 0.15 -1.57 16 8 C 0.13 2.42 2.25 44.36 0.10 2.52 16 9 H 0.12 1.83 6.95 -2.39 -0.02 1.81 16 10 C 0.51 13.11 6.19 87.66 0.54 13.65 16 11 O -0.57 -18.61 13.80 -3.02 -0.04 -18.65 16 12 N -0.58 -15.87 2.29 -811.02 -1.86 -17.72 16 13 C 0.10 2.52 5.54 87.25 0.48 3.00 16 14 C 0.11 3.65 2.93 46.17 0.14 3.78 16 15 H 0.07 2.57 3.16 -2.39 -0.01 2.56 16 16 C -0.13 -3.32 5.96 31.37 0.19 -3.13 16 17 C -0.12 -3.23 6.18 31.37 0.19 -3.04 16 18 C 0.13 4.45 4.27 45.46 0.19 4.64 16 19 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 20 C 0.11 3.53 5.93 86.54 0.51 4.05 16 21 N -0.61 -25.26 2.48 -633.05 -1.57 -26.84 16 22 C -0.22 -11.77 10.76 84.03 0.90 -10.87 16 23 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 24 C -0.04 -1.97 5.49 84.86 0.47 -1.50 16 25 N -0.96 -57.88 13.97 21.65 0.30 -57.58 16 26 Si 0.94 41.26 24.67 68.60 1.69 42.95 16 27 H -0.26 -10.38 6.68 99.48 0.66 -9.71 16 28 H -0.24 -9.48 5.35 99.48 0.53 -8.95 16 29 H -0.32 -14.96 7.11 99.48 0.71 -14.26 16 30 H 0.05 1.57 6.95 -2.39 -0.02 1.55 16 31 H 0.07 1.88 7.13 -2.39 -0.02 1.87 16 32 H 0.07 1.66 7.75 -2.39 -0.02 1.64 16 33 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 0.62 8.13 -2.39 -0.02 0.60 16 36 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.08 1.14 8.10 -2.39 -0.02 1.12 16 38 H 0.11 1.15 4.66 -2.39 -0.01 1.13 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.12 2.02 4.54 -2.39 -0.01 2.00 16 41 H 0.06 1.74 6.83 -2.39 -0.02 1.73 16 42 H 0.10 1.84 5.57 -2.39 -0.01 1.82 16 43 H 0.07 1.88 7.86 -2.39 -0.02 1.86 16 44 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.09 2.67 7.11 -2.39 -0.02 2.65 16 47 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -73.53 342.07 2.78 -70.75 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.77 Total: 17.52 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 5.99 Total: 25.44 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -5.59 Total: -118.45 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.09 Total: -38.21 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.69 Total: 42.95 kcal Total: -73.53 2.78 -70.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029569586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.217 kcal (2) G-P(sol) polarization free energy of solvation -73.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds