Wall clock time and date at job start Fri Apr 10 2020 18:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.45755 * 117.94420 * 2 1 4 4 C 1.52928 * 110.48722 * 199.07649 * 3 2 1 5 5 H 1.09000 * 109.73854 * 69.08323 * 4 3 2 6 6 C 1.50693 * 109.60353 * 189.49165 * 4 3 2 7 7 O 1.21280 * 120.00290 * 95.42594 * 6 4 3 8 8 N 1.34782 * 119.99850 * 275.42928 * 6 4 3 9 9 C 1.47163 * 120.70672 * 185.02362 * 8 6 4 10 10 C 1.53886 * 108.03126 * 132.74850 * 9 8 6 11 11 H 1.09004 * 112.58057 * 182.21863 * 10 9 8 12 12 C 1.54134 * 107.71195 * 306.32494 * 10 9 8 13 13 C 1.54275 * 104.89001 * 89.40533 * 12 10 9 14 14 C 1.54543 * 104.85225 * 359.81353 * 13 12 10 15 15 H 1.08998 * 112.18765 * 146.40586 * 14 13 12 16 16 C 1.49234 * 120.77138 * 5.10148 * 8 6 4 17 17 N 1.48310 * 107.20875 * 58.36135 * 10 9 8 18 18 C 1.36929 * 128.07875 * 106.70170 * 17 10 9 19 19 H 1.08007 * 119.99997 * 165.00560 * 18 17 10 20 20 C 1.38817 * 120.00056 * 345.00550 * 18 17 10 21 21 N 1.31621 * 119.99654 * 350.70934 * 20 18 17 22 22 Si 1.86802 * 119.99898 * 170.70578 * 20 18 17 23 23 H 1.48498 * 109.46568 * 179.97438 * 22 20 18 24 24 H 1.48498 * 109.47305 * 300.00255 * 22 20 18 25 25 H 1.48500 * 109.46787 * 60.00351 * 22 20 18 26 26 C 1.53345 * 108.67100 * 309.24707 * 4 3 2 27 27 C 1.53071 * 108.42353 * 67.53449 * 26 4 3 28 28 C 1.33353 * 117.94956 * 180.02562 * 2 1 3 29 29 O 1.21278 * 118.24308 * 357.79380 * 28 2 1 30 30 H 1.09001 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47197 * 299.99597 * 1 2 3 32 32 H 1.08999 * 109.47387 * 60.00070 * 1 2 3 33 33 H 1.09001 * 109.30203 * 78.76516 * 3 2 1 34 34 H 1.09000 * 109.30206 * 319.38438 * 3 2 1 35 35 H 1.09005 * 109.75490 * 13.11216 * 9 8 6 36 36 H 1.09002 * 109.79478 * 252.40288 * 9 8 6 37 37 H 1.09006 * 110.50145 * 330.46972 * 12 10 9 38 38 H 1.08996 * 110.27544 * 208.23145 * 12 10 9 39 39 H 1.09001 * 110.36594 * 240.96595 * 13 12 10 40 40 H 1.09004 * 110.45234 * 118.70096 * 13 12 10 41 41 H 1.09000 * 110.52056 * 107.82275 * 16 8 6 42 42 H 1.09006 * 109.74814 * 346.60161 * 16 8 6 43 43 H 0.97005 * 119.99708 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.66843 * 187.26048 * 26 4 3 45 45 H 1.08995 * 109.67422 * 307.75992 * 26 4 3 46 46 H 1.09005 * 109.40538 * 71.22499 * 27 26 4 47 47 H 1.09004 * 109.40017 * 191.05596 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1480 1.2876 0.0000 4 6 3.5948 1.1260 -0.4682 5 1 3.6127 0.8740 -1.5285 6 6 4.3462 2.4124 -0.2416 7 8 5.0032 2.5614 0.7669 8 7 4.2882 3.3975 -1.1597 9 6 5.1013 4.6147 -1.0084 10 6 5.7868 4.9002 -2.3562 11 1 6.4423 5.7702 -2.3164 12 6 6.5414 3.6241 -2.7781 13 6 5.5164 2.8085 -3.5931 14 6 4.2311 3.6666 -3.5850 15 1 3.6641 3.5674 -4.5106 16 6 3.3971 3.2793 -2.3510 17 7 4.7151 5.0520 -3.3701 18 6 4.2785 6.2020 -3.9717 19 1 3.6653 6.1479 -4.8592 20 6 4.6240 7.4373 -3.4410 21 7 5.2123 7.5072 -2.2657 22 14 4.2541 9.0001 -4.3949 23 1 4.7179 10.1766 -3.6165 24 1 4.9588 8.9612 -5.7014 25 1 2.7907 9.1050 -4.6247 26 6 4.2492 -0.0012 0.3396 27 6 3.5838 -1.3239 -0.0487 28 6 2.0900 -1.1780 -0.0005 29 8 1.4159 -2.1853 0.0402 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.1398 1.6998 1.0090 34 1 1.6270 1.9718 -0.6697 35 1 5.8557 4.4602 -0.2369 36 1 4.4619 5.4542 -0.7353 37 1 6.8617 3.0622 -1.9006 38 1 7.4007 3.8808 -3.3976 39 1 5.3326 1.8456 -3.1164 40 1 5.8697 2.6643 -4.6141 41 1 2.5435 3.9507 -2.2578 42 1 3.0488 2.2511 -2.4498 43 1 5.4541 8.3704 -1.8949 44 1 5.3142 -0.0455 0.1116 45 1 4.1092 0.1818 1.4049 46 1 3.8880 -1.5996 -1.0585 47 1 3.8930 -2.1031 0.6480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029598954.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:02 Heat of formation + Delta-G solvation = -28.057469 kcal Electronic energy + Delta-G solvation = -29206.450311 eV Core-core repulsion = 25390.150627 eV Total energy + Delta-G solvation = -3816.299684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.94414 -39.85789 -38.10433 -36.27757 -34.16503 -33.77968 -32.43985 -30.99916 -29.93756 -29.29476 -27.36459 -26.32378 -24.73252 -24.06271 -23.80594 -22.51478 -19.98994 -19.71629 -18.92487 -18.49780 -17.41961 -16.72445 -16.58514 -16.28292 -15.72919 -15.45832 -14.95243 -14.71052 -14.49897 -14.14373 -13.85138 -13.56316 -13.34487 -13.16984 -13.03676 -12.88565 -12.75224 -12.36390 -12.03640 -11.94404 -11.89229 -11.76225 -11.63919 -11.31153 -11.19947 -10.98190 -10.92823 -10.81884 -10.42348 -10.12993 -9.94334 -9.82902 -9.75566 -9.64773 -9.34356 -8.94525 -8.84512 -8.16632 -6.93330 -5.91240 -3.27284 2.46837 2.67542 3.02212 3.31063 3.36394 3.37806 3.40834 4.32044 4.35656 4.46252 4.52831 4.55739 4.92280 5.07082 5.11382 5.14595 5.21992 5.24571 5.29568 5.32655 5.47446 5.53071 5.57669 5.60098 5.65687 5.68713 5.72821 5.83102 5.86832 6.02393 6.11566 6.16790 6.22342 6.30539 6.43974 6.54147 6.60943 6.71275 6.77345 6.86592 7.21672 7.22483 7.41803 7.61890 7.93522 7.97032 8.06192 8.55324 8.97904 9.60326 10.35848 11.21424 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.021375 B = 0.003630 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.611198 B = 7711.193463 C = 8076.555593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.604 5.604 3 C 0.126 3.874 4 C -0.125 4.125 5 H 0.101 0.899 6 C 0.515 3.485 7 O -0.552 6.552 8 N -0.590 5.590 9 C 0.113 3.887 10 C 0.168 3.832 11 H 0.119 0.881 12 C -0.137 4.137 13 C -0.122 4.122 14 C 0.133 3.867 15 H 0.078 0.922 16 C 0.093 3.907 17 N -0.583 5.583 18 C -0.231 4.231 19 H 0.076 0.924 20 C 0.000 4.000 21 N -0.912 5.912 22 Si 0.912 3.088 23 H -0.290 1.290 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.103 4.103 27 C -0.133 4.133 28 C 0.517 3.483 29 O -0.560 6.560 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.256 0.744 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.101 0.899 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 -12.712 1.915 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.337 5.337 3 C 0.003 3.997 4 C -0.147 4.147 5 H 0.119 0.881 6 C 0.301 3.699 7 O -0.431 6.431 8 N -0.322 5.322 9 C -0.010 4.010 10 C 0.060 3.940 11 H 0.136 0.864 12 C -0.176 4.176 13 C -0.161 4.161 14 C 0.024 3.976 15 H 0.096 0.904 16 C -0.032 4.032 17 N -0.304 5.304 18 C -0.359 4.359 19 H 0.094 0.906 20 C -0.198 4.198 21 N -0.558 5.558 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.141 4.141 27 C -0.173 4.173 28 C 0.307 3.693 29 O -0.440 6.440 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.120 0.880 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.881 -12.806 2.463 13.606 hybrid contribution -0.297 1.036 -0.536 1.204 sum -4.178 -11.770 1.926 12.637 Atomic orbital electron populations 1.21796 0.79352 1.04646 1.01609 1.47168 1.07623 1.05961 1.72961 1.21283 0.91223 0.84548 1.02659 1.21648 0.94961 0.95452 1.02608 0.88062 1.19992 0.82205 0.84363 0.83338 1.90669 1.43790 1.81122 1.27538 1.48776 1.42394 1.18597 1.22394 1.22452 0.94540 0.84360 0.99664 1.21817 0.90084 0.95279 0.86781 0.86352 1.22579 0.97913 0.98417 0.98680 1.22470 0.96929 0.97400 0.99320 1.21946 0.93515 0.87483 0.94680 0.90428 1.22987 0.93503 0.99817 0.86890 1.45148 1.37670 1.00527 1.47081 1.18940 1.28863 0.82362 1.05693 0.90619 1.24829 1.01184 0.97557 0.96217 1.69825 1.45715 1.24112 1.16117 0.86212 0.77932 0.82621 0.79013 1.21568 1.21147 1.21099 1.21491 1.00533 0.91093 1.00955 1.21690 0.90742 0.99829 1.05040 1.20247 0.91147 0.82633 0.75322 1.90685 1.66491 1.35782 1.51005 0.88965 0.92107 0.91926 0.90794 0.89783 0.91334 0.90221 0.92867 0.92812 0.93096 0.92561 0.91069 0.91582 0.93359 0.89817 0.90116 0.88040 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.47 59.84 0.63 1.28 16 2 N -0.60 -6.69 3.21 -182.86 -0.59 -7.28 16 3 C 0.13 1.36 5.59 -4.48 -0.03 1.34 16 4 C -0.12 -1.46 1.73 -91.63 -0.16 -1.62 16 5 H 0.10 1.07 6.44 -51.93 -0.33 0.74 16 6 C 0.52 8.16 6.81 -10.99 -0.07 8.08 16 7 O -0.55 -10.57 15.73 5.56 0.09 -10.48 16 8 N -0.59 -10.02 2.28 -169.81 -0.39 -10.41 16 9 C 0.11 2.31 5.78 -3.22 -0.02 2.29 16 10 C 0.17 3.58 3.11 -65.88 -0.20 3.37 16 11 H 0.12 2.92 6.36 -51.93 -0.33 2.59 16 12 C -0.14 -2.46 6.16 -25.47 -0.16 -2.62 16 13 C -0.12 -1.94 6.19 -25.25 -0.16 -2.10 16 14 C 0.13 2.31 4.27 -65.65 -0.28 2.03 16 15 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 16 C 0.09 1.42 5.45 -2.06 -0.01 1.41 16 17 N -0.58 -12.92 2.80 -152.83 -0.43 -13.35 16 18 C -0.23 -5.73 10.37 -15.06 -0.16 -5.89 16 19 H 0.08 1.83 7.85 -52.48 -0.41 1.42 16 20 C 0.00 -0.01 5.42 -17.43 -0.09 -0.10 16 21 N -0.91 -24.13 10.42 55.49 0.58 -23.55 16 22 Si 0.91 20.50 29.56 -169.99 -5.03 15.48 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.10 -1.10 4.72 -26.52 -0.13 -1.23 16 27 C -0.13 -1.30 6.03 -28.10 -0.17 -1.47 16 28 C 0.52 6.40 7.47 -11.87 -0.09 6.31 16 29 O -0.56 -8.72 15.95 5.56 0.09 -8.63 16 30 H 0.09 0.99 6.59 -51.93 -0.34 0.64 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 34 H 0.08 0.84 7.38 -51.93 -0.38 0.46 16 35 H 0.07 1.43 7.16 -51.93 -0.37 1.06 16 36 H 0.08 1.88 7.83 -51.93 -0.41 1.48 16 37 H 0.05 0.93 7.83 -51.93 -0.41 0.53 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.71 7.86 -51.93 -0.41 0.30 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 0.79 5.36 -51.93 -0.28 0.51 16 43 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 46 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 359.30 15.07 5.41 5.41 Total: -1.00 -29.95 359.30 -8.81 -38.75 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.45 Total: 2.97 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -1.09 Total: 11.09 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.82 Total: -54.59 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.18 Total: -19.12 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.95 -8.81 -38.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029598954.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.697 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds